Wall clock time and date at job start Sun Mar 29 2020 22:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47082 * 2 1 4 4 H 1.08993 * 109.48535 * 304.98217 * 3 2 1 5 5 C 1.53092 * 109.48250 * 184.94246 * 3 2 1 6 6 C 1.53182 * 109.16583 * 297.63124 * 5 3 2 7 7 H 1.08997 * 109.61266 * 62.92597 * 6 5 3 8 8 N 1.46896 * 109.54194 * 183.15088 * 6 5 3 9 9 C 1.46898 * 110.99987 * 303.50713 * 8 6 5 10 10 C 1.53000 * 109.46864 * 168.19729 * 9 8 6 11 11 C 1.46908 * 110.99442 * 179.55742 * 8 6 5 12 12 C 1.50698 * 109.47369 * 61.31246 * 11 8 6 13 13 H 1.08005 * 120.00153 * 4.50248 * 12 11 8 14 14 C 1.37879 * 119.99966 * 184.50941 * 12 11 8 15 15 N 1.31507 * 119.99938 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00072 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47018 * 89.99971 * 16 14 12 18 18 H 1.48494 * 109.47196 * 210.00100 * 16 14 12 19 19 H 1.48506 * 109.47146 * 330.00127 * 16 14 12 20 20 C 1.53171 * 109.03292 * 303.01869 * 6 5 3 21 21 C 1.53095 * 109.16869 * 56.98146 * 20 6 5 22 22 O 1.42901 * 109.41249 * 302.39165 * 21 20 6 23 23 H 1.09000 * 109.47286 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47545 * 59.99526 * 1 2 3 25 25 H 1.09005 * 109.47277 * 299.99202 * 1 2 3 26 26 H 1.09004 * 109.47167 * 120.00338 * 2 1 3 27 27 H 1.09005 * 109.46748 * 240.00244 * 2 1 3 28 28 H 1.09003 * 109.52109 * 57.53391 * 5 3 2 29 29 H 1.08996 * 109.52320 * 177.72583 * 5 3 2 30 30 H 1.09001 * 109.47150 * 288.19228 * 9 8 6 31 31 H 1.08994 * 109.47087 * 48.19687 * 9 8 6 32 32 H 1.08994 * 109.47205 * 298.68667 * 10 9 8 33 33 H 1.08995 * 109.47121 * 58.69397 * 10 9 8 34 34 H 1.09011 * 109.46904 * 178.69093 * 10 9 8 35 35 H 1.09003 * 109.46713 * 181.31042 * 11 8 6 36 36 H 1.08998 * 109.46963 * 301.30286 * 11 8 6 37 37 H 0.97007 * 120.00066 * 179.97438 * 15 14 12 38 38 H 1.08995 * 109.52619 * 297.07115 * 20 6 5 39 39 H 1.09007 * 109.57191 * 176.91664 * 20 6 5 40 40 H 1.09004 * 109.48328 * 182.40637 * 21 20 6 41 41 H 1.08998 * 109.48291 * 62.37075 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 -0.8419 5 6 3.5658 1.4446 -0.1243 6 6 4.1705 0.7377 1.0927 7 1 3.8508 -0.3042 1.1069 8 7 5.6363 0.8010 1.0196 9 6 6.1263 0.2203 -0.2376 10 6 7.6069 0.5628 -0.4146 11 6 6.2502 0.1402 2.1792 12 6 5.8561 -1.3142 2.1955 13 1 5.2743 -1.7252 1.3837 14 6 6.2381 -2.1202 3.2470 15 7 6.9467 -1.6198 4.2353 16 14 5.7490 -3.9229 3.2675 17 1 6.7987 -4.7283 2.5933 18 1 5.6009 -4.3796 4.6727 19 1 4.4585 -4.0939 2.5528 20 6 3.6902 1.4385 2.3671 21 6 2.1595 1.4367 2.3954 22 8 1.6620 2.0814 1.2212 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3634 0.5137 0.8901 26 1 1.8933 -0.5139 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 3.8579 0.9187 -1.0334 29 1 3.9266 2.4723 -0.1650 30 1 6.0048 -0.8626 -0.2093 31 1 5.5567 0.6281 -1.0725 32 1 7.7258 1.6450 -0.4663 33 1 8.1733 0.1750 0.4320 34 1 7.9765 0.1123 -1.3359 35 1 7.3350 0.2220 2.1118 36 1 5.9060 0.6204 3.0952 37 1 7.2152 -2.1868 4.9753 38 1 4.0534 2.4661 2.3768 39 1 4.0713 0.9093 3.2406 40 1 1.8116 1.9717 3.2790 41 1 1.7977 0.4089 2.4267 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170224729.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:08 Heat of formation + Delta-G solvation = -75.545653 kcal Electronic energy + Delta-G solvation = -19013.340789 eV Core-core repulsion = 16312.958058 eV Total energy + Delta-G solvation = -2700.382731 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05941 -38.43601 -34.76604 -34.32151 -33.49453 -31.27258 -30.67091 -28.24945 -25.66282 -25.06202 -23.96708 -22.99942 -21.41730 -20.05183 -18.36944 -17.70396 -17.02216 -16.71129 -16.28863 -15.77329 -15.52283 -15.19611 -14.85675 -14.43237 -14.31789 -13.94162 -13.65529 -13.33191 -13.26729 -12.93311 -12.80810 -12.64006 -12.53859 -12.23601 -12.17696 -12.00803 -11.92212 -11.79740 -11.74035 -11.58378 -10.96896 -10.88364 -10.57618 -10.33546 -8.94817 -8.13456 -6.32336 1.33308 1.34331 1.43755 2.35513 2.95420 3.10365 3.33695 3.80827 3.95202 4.05322 4.14484 4.25243 4.32708 4.36502 4.51410 4.55269 4.61595 4.64978 4.72494 4.80961 4.87625 4.90786 4.99486 5.02760 5.10652 5.15786 5.24623 5.27519 5.33603 5.35671 5.39102 5.42413 5.45317 5.51033 5.79809 6.10265 6.30389 6.35191 6.64114 6.89482 7.37999 8.87749 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.019798 B = 0.008592 C = 0.007314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.968001 B = 3258.074977 C = 3827.399508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.160 4.160 3 C 0.095 3.905 4 H 0.123 0.877 5 C -0.137 4.137 6 C 0.095 3.905 7 H 0.027 0.973 8 N -0.539 5.539 9 C 0.050 3.950 10 C -0.135 4.135 11 C 0.199 3.801 12 C -0.545 4.545 13 H 0.052 0.948 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.949 3.051 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.139 4.139 21 C 0.068 3.932 22 O -0.383 6.383 23 H 0.056 0.944 24 H 0.068 0.932 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.017 0.983 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.030 0.970 34 H 0.070 0.930 35 H 0.005 0.995 36 H 0.010 0.990 37 H 0.263 0.737 38 H 0.064 0.936 39 H 0.050 0.950 40 H 0.105 0.895 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 4.327 -9.425 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.197 4.197 3 C 0.037 3.963 4 H 0.140 0.860 5 C -0.175 4.175 6 C -0.014 4.014 7 H 0.045 0.955 8 N -0.263 5.263 9 C -0.078 4.078 10 C -0.193 4.193 11 C 0.072 3.928 12 C -0.585 4.585 13 H 0.070 0.930 14 C -0.186 4.186 15 N -0.565 5.565 16 Si 0.774 3.226 17 H -0.201 1.201 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.177 4.177 21 C -0.009 4.009 22 O -0.302 6.302 23 H 0.075 0.925 24 H 0.087 0.913 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.091 0.909 30 H 0.035 0.965 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.028 0.972 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.123 0.877 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.891 4.952 -9.249 14.419 hybrid contribution 0.354 -2.269 0.680 2.395 sum -9.537 2.683 -8.569 13.099 Atomic orbital electron populations 1.21654 0.94040 1.01720 1.02416 1.22192 0.97807 0.97215 1.02532 1.22340 0.92912 0.93499 0.87564 0.85976 1.22316 0.95868 1.01536 0.97739 1.21416 0.88026 0.96859 0.95110 0.95500 1.62553 1.05698 1.55021 1.02981 1.22047 0.96665 0.96767 0.92303 1.21657 0.95412 1.01475 1.00720 1.19431 0.93548 0.91023 0.88803 1.21898 1.33886 0.96865 1.05806 0.92954 1.25731 0.95073 1.02558 0.95239 1.70059 1.38525 1.37448 1.10509 0.85695 0.78810 0.80660 0.77403 1.20096 1.20729 1.19291 1.22103 0.96752 1.00715 0.98096 1.22527 0.91892 0.97945 0.88546 1.87899 1.74561 1.53658 1.14088 0.92537 0.91334 0.92988 0.93154 0.90458 0.90162 0.90923 0.96483 0.89808 0.92133 0.95123 0.91064 0.97741 0.97169 0.92760 0.91768 0.93111 0.87667 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 9.81 71.98 0.71 -2.26 16 2 C -0.16 -4.03 4.74 30.59 0.15 -3.88 16 3 C 0.09 2.45 3.29 30.62 0.10 2.55 16 4 H 0.12 2.55 8.14 -2.39 -0.02 2.54 16 5 C -0.14 -4.04 4.51 30.69 0.14 -3.91 16 6 C 0.09 3.59 1.42 45.03 0.06 3.66 16 7 H 0.03 1.16 5.25 -2.39 -0.01 1.15 16 8 N -0.54 -22.98 4.57 -874.84 -4.00 -26.97 16 9 C 0.05 1.90 5.29 86.30 0.46 2.35 16 10 C -0.14 -4.73 9.91 71.98 0.71 -4.02 16 11 C 0.20 10.39 4.60 85.55 0.39 10.78 16 12 C -0.55 -29.95 7.48 25.60 0.19 -29.76 16 13 H 0.05 2.85 5.88 -2.91 -0.02 2.84 16 14 C 0.01 0.74 5.46 84.66 0.46 1.20 16 15 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 16 Si 0.95 43.92 29.54 68.60 2.03 45.94 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 C -0.14 -5.20 5.08 30.68 0.16 -5.04 16 21 C 0.07 2.10 6.52 72.01 0.47 2.57 16 22 O -0.38 -11.28 10.13 -148.98 -1.51 -12.79 16 23 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.16 7.82 -2.38 -0.02 1.14 16 26 H 0.05 1.53 4.98 -2.39 -0.01 1.52 16 27 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.08 2.16 6.30 -2.39 -0.02 2.15 16 29 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.02 0.72 6.35 -2.39 -0.02 0.71 16 31 H 0.08 2.65 5.71 -2.39 -0.01 2.64 16 32 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.03 1.25 6.50 -2.39 -0.02 1.23 16 34 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 35 H 0.00 0.26 6.40 -2.39 -0.02 0.24 16 36 H 0.01 0.58 6.31 -2.39 -0.02 0.57 16 37 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 38 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 2.23 6.57 -2.38 -0.02 2.21 16 40 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 41 H 0.05 1.55 6.23 -2.39 -0.01 1.53 16 Total: -1.00 -61.34 302.84 1.80 -59.55 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.99 Total: 14.80 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 4.00 Total: -25.76 kcal Atomic # 7 Polarization: -78.03 SS G_CDS: -3.71 Total: -81.74 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: -1.51 Total: -12.79 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.34 1.80 -59.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224729.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.999 kcal (2) G-P(sol) polarization free energy of solvation -61.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds