Wall clock time and date at job start Sun Mar 29 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47384 * 2 1 4 4 H 1.08998 * 109.48544 * 55.02831 * 3 2 1 5 5 C 1.53086 * 109.47974 * 175.05897 * 3 2 1 6 6 C 1.53176 * 109.16379 * 177.59197 * 5 3 2 7 7 H 1.09006 * 109.54407 * 62.88139 * 6 5 3 8 8 N 1.46897 * 109.54469 * 183.14967 * 6 5 3 9 9 C 1.46901 * 111.00105 * 192.97336 * 8 6 5 10 10 C 1.53007 * 109.47110 * 75.82607 * 9 8 6 11 11 C 1.46900 * 110.99907 * 69.02337 * 8 6 5 12 12 C 1.50700 * 109.47027 * 189.99791 * 11 8 6 13 13 H 1.07998 * 120.00083 * 359.97438 * 12 11 8 14 14 C 1.37882 * 120.00093 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00077 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46993 * 90.00734 * 16 14 12 18 18 H 1.48504 * 109.47008 * 210.00181 * 16 14 12 19 19 H 1.48504 * 109.47356 * 330.00482 * 16 14 12 20 20 C 1.53179 * 109.03629 * 303.01930 * 6 5 3 21 21 C 1.53096 * 109.16299 * 56.97729 * 20 6 5 22 22 O 1.42895 * 109.41494 * 302.39435 * 21 20 6 23 23 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47053 * 300.00334 * 1 2 3 25 25 H 1.09004 * 109.46804 * 59.99787 * 1 2 3 26 26 H 1.09003 * 109.47053 * 239.99665 * 2 1 3 27 27 H 1.09004 * 109.46804 * 120.00213 * 2 1 3 28 28 H 1.09007 * 109.52210 * 297.49404 * 5 3 2 29 29 H 1.08996 * 109.52575 * 57.68779 * 5 3 2 30 30 H 1.08996 * 109.47606 * 195.82910 * 9 8 6 31 31 H 1.09006 * 109.47206 * 315.82859 * 9 8 6 32 32 H 1.09001 * 109.46699 * 304.57950 * 10 9 8 33 33 H 1.09003 * 109.46548 * 64.58127 * 10 9 8 34 34 H 1.09002 * 109.47178 * 184.58183 * 10 9 8 35 35 H 1.08998 * 109.47223 * 309.99872 * 11 8 6 36 36 H 1.08998 * 109.47399 * 69.99719 * 11 8 6 37 37 H 0.97005 * 120.00003 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.52017 * 297.07298 * 20 6 5 39 39 H 1.09001 * 109.52343 * 176.88155 * 20 6 5 40 40 H 1.09001 * 109.47575 * 62.37704 * 21 20 6 41 41 H 1.08996 * 109.47807 * 182.41186 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6060 1.9816 0.8420 5 6 3.5659 1.4444 0.1243 6 6 4.0736 2.8883 0.0630 7 1 3.6801 3.4495 0.9107 8 7 5.5419 2.8952 0.1058 9 6 6.0549 4.2485 0.3579 10 6 5.8632 4.5996 1.8348 11 6 6.1072 2.3400 -1.1312 12 6 7.5900 2.1349 -0.9580 13 1 8.0651 2.3917 -0.0227 14 6 8.3403 1.6193 -1.9935 15 7 7.7619 1.3070 -3.1326 16 14 10.1785 1.3657 -1.7791 17 1 10.4314 0.0025 -1.2470 18 1 10.8557 1.5180 -3.0919 19 1 10.7099 2.3748 -0.8279 20 6 3.5959 3.5309 -1.2428 21 6 2.0688 3.4483 -1.3144 22 8 1.6622 2.0816 -1.2210 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8545 0.9969 1.0755 29 1 3.9989 0.8711 -0.6953 30 1 7.1156 4.2871 0.1100 31 1 5.5113 4.9640 -0.2592 32 1 4.8131 4.4823 2.1027 33 1 6.4713 3.9348 2.4482 34 1 6.1684 5.6320 2.0054 35 1 5.6314 1.3843 -1.3511 36 1 5.9298 3.0321 -1.9544 37 1 8.2898 0.9447 -3.8613 38 1 4.0295 2.9996 -2.0901 39 1 3.9058 4.5756 -1.2694 40 1 1.6352 4.0138 -0.4895 41 1 1.7262 3.8656 -2.2612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170224730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:10 Heat of formation + Delta-G solvation = -61.773251 kcal Electronic energy + Delta-G solvation = -18605.796232 eV Core-core repulsion = 15906.010717 eV Total energy + Delta-G solvation = -2699.785515 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.55114 -36.82762 -33.77247 -32.72987 -31.86449 -29.64853 -29.39454 -26.47345 -24.31149 -23.16843 -22.48663 -21.59011 -20.48438 -18.55753 -16.50193 -16.17010 -15.75521 -14.99361 -14.41109 -14.28182 -14.14070 -13.65961 -13.50238 -13.32880 -12.91627 -12.70583 -12.12772 -12.08138 -11.65803 -11.47992 -11.22866 -11.10849 -11.00916 -10.89160 -10.74737 -10.65162 -10.42904 -10.25286 -10.06791 -9.95677 -9.54224 -9.15072 -9.10678 -8.40270 -7.15193 -6.00653 -4.01577 3.32699 3.38740 3.42062 4.03563 4.43216 4.72979 5.11380 5.15969 5.23572 5.31306 5.35177 5.42953 5.50044 5.54968 5.65580 5.70213 5.81117 5.87976 5.94699 6.00686 6.02668 6.05301 6.17576 6.24170 6.33439 6.36916 6.40096 6.46472 6.65153 6.74805 6.81024 6.84469 7.35764 7.42050 7.53646 7.83470 8.14838 8.25979 8.59724 9.06438 9.62249 11.09942 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.006649 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.962622 B = 4210.361422 C = 4742.905414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C 0.093 3.907 4 H 0.051 0.949 5 C -0.139 4.139 6 C 0.086 3.914 7 H 0.065 0.935 8 N -0.529 5.529 9 C 0.053 3.947 10 C -0.142 4.142 11 C 0.191 3.809 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.896 3.104 17 H -0.281 1.281 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.191 4.191 21 C 0.070 3.930 22 O -0.380 6.380 23 H 0.050 0.950 24 H 0.048 0.952 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.019 0.981 32 H 0.043 0.957 33 H 0.057 0.943 34 H 0.045 0.955 35 H 0.033 0.967 36 H -0.007 1.007 37 H 0.261 0.739 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.041 0.959 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.577 2.704 6.508 13.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.068 0.932 5 C -0.177 4.177 6 C -0.023 4.023 7 H 0.083 0.917 8 N -0.252 5.252 9 C -0.076 4.076 10 C -0.200 4.200 11 C 0.066 3.934 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.724 3.276 17 H -0.207 1.207 18 H -0.214 1.214 19 H -0.199 1.199 20 C -0.231 4.231 21 C -0.007 4.007 22 O -0.299 6.299 23 H 0.069 0.931 24 H 0.068 0.932 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.037 0.963 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.051 0.949 36 H 0.011 0.989 37 H 0.070 0.930 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.459 2.234 6.581 13.401 hybrid contribution 0.999 0.557 -0.530 1.261 sum -10.459 2.791 6.050 12.401 Atomic orbital electron populations 1.21715 0.95716 1.01112 1.01950 1.21539 0.96093 0.94833 1.02911 1.22136 0.94286 0.93494 0.86581 0.93154 1.22253 0.94127 0.97621 1.03724 1.21647 0.90431 0.95249 0.94995 0.91665 1.62306 1.02949 1.20131 1.39844 1.21990 1.01549 0.89480 0.94544 1.21784 1.00836 0.99702 0.97674 1.19765 0.94711 0.94515 0.84397 1.21195 0.92565 1.41738 0.99129 0.91991 1.24979 0.98645 0.95758 0.95193 1.69963 1.35865 1.44144 1.03762 0.86534 0.85250 0.78579 0.77250 1.20670 1.21373 1.19915 1.22925 0.96282 1.01918 1.01938 1.22445 0.94316 0.82949 1.01013 1.87874 1.78443 1.24727 1.38897 0.93073 0.93243 0.92087 0.90964 0.90717 0.90780 0.90134 0.89717 0.96269 0.93752 0.92409 0.93615 0.94873 0.98877 0.92980 0.89683 0.91586 0.94047 0.89558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.81 37.16 0.36 -1.28 16 2 C -0.12 -1.50 5.64 -26.73 -0.15 -1.65 16 3 C 0.09 1.37 2.64 -26.69 -0.07 1.30 16 4 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.14 -2.40 4.76 -26.60 -0.13 -2.53 16 6 C 0.09 1.55 2.17 -67.53 -0.15 1.40 16 7 H 0.07 1.08 6.54 -51.93 -0.34 0.74 16 8 N -0.53 -11.26 4.36 -227.86 -0.99 -12.25 16 9 C 0.05 1.02 5.43 -3.82 -0.02 1.00 16 10 C -0.14 -2.26 10.08 37.16 0.37 -1.88 16 11 C 0.19 4.91 3.56 -4.98 -0.02 4.89 16 12 C -0.51 -14.21 8.23 -34.44 -0.28 -14.50 16 13 H 0.06 1.73 7.31 -52.49 -0.38 1.34 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 16 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 C -0.19 -3.33 4.69 -26.59 -0.12 -3.45 16 21 C 0.07 1.03 6.84 37.21 0.25 1.29 16 22 O -0.38 -6.14 9.94 -35.23 -0.35 -6.49 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.73 7.82 -51.93 -0.41 0.32 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 29 H 0.08 1.62 6.38 -51.93 -0.33 1.29 16 30 H 0.08 1.83 6.58 -51.93 -0.34 1.49 16 31 H 0.02 0.36 6.44 -51.93 -0.33 0.02 16 32 H 0.04 0.66 6.66 -51.93 -0.35 0.31 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 34 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.03 0.92 6.20 -51.93 -0.32 0.60 16 36 H -0.01 -0.18 6.77 -51.93 -0.35 -0.53 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.08 1.76 6.36 -51.93 -0.33 1.43 16 39 H 0.07 1.11 6.74 -51.93 -0.35 0.76 16 40 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 311.29 15.07 4.69 4.69 Total: -1.00 -29.46 311.29 -8.18 -37.64 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -7.20 Total: -0.36 kcal Atomic # 6 Polarization: -13.88 SS G_CDS: -0.04 Total: -13.93 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.26 Total: -38.25 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.35 Total: -6.49 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -29.46 -8.18 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.131 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds