Wall clock time and date at job start Sun Mar 29 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47384 * 2 1 4 4 H 1.08998 * 109.48544 * 55.02831 * 3 2 1 5 5 C 1.53086 * 109.47974 * 175.05897 * 3 2 1 6 6 C 1.53176 * 109.16379 * 177.59197 * 5 3 2 7 7 H 1.09006 * 109.54407 * 62.88139 * 6 5 3 8 8 N 1.46897 * 109.54469 * 183.14967 * 6 5 3 9 9 C 1.46901 * 111.00105 * 192.97336 * 8 6 5 10 10 C 1.53007 * 109.47110 * 75.82607 * 9 8 6 11 11 C 1.46900 * 110.99907 * 69.02337 * 8 6 5 12 12 C 1.50700 * 109.47027 * 189.99791 * 11 8 6 13 13 H 1.07998 * 120.00083 * 359.97438 * 12 11 8 14 14 C 1.37882 * 120.00093 * 179.97438 * 12 11 8 15 15 N 1.31514 * 119.99786 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00077 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46993 * 90.00734 * 16 14 12 18 18 H 1.48504 * 109.47008 * 210.00181 * 16 14 12 19 19 H 1.48504 * 109.47356 * 330.00482 * 16 14 12 20 20 C 1.53179 * 109.03629 * 303.01930 * 6 5 3 21 21 C 1.53096 * 109.16299 * 56.97729 * 20 6 5 22 22 O 1.42895 * 109.41494 * 302.39435 * 21 20 6 23 23 H 1.09002 * 109.47056 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47053 * 300.00334 * 1 2 3 25 25 H 1.09004 * 109.46804 * 59.99787 * 1 2 3 26 26 H 1.09003 * 109.47053 * 239.99665 * 2 1 3 27 27 H 1.09004 * 109.46804 * 120.00213 * 2 1 3 28 28 H 1.09007 * 109.52210 * 297.49404 * 5 3 2 29 29 H 1.08996 * 109.52575 * 57.68779 * 5 3 2 30 30 H 1.08996 * 109.47606 * 195.82910 * 9 8 6 31 31 H 1.09006 * 109.47206 * 315.82859 * 9 8 6 32 32 H 1.09001 * 109.46699 * 304.57950 * 10 9 8 33 33 H 1.09003 * 109.46548 * 64.58127 * 10 9 8 34 34 H 1.09002 * 109.47178 * 184.58183 * 10 9 8 35 35 H 1.08998 * 109.47223 * 309.99872 * 11 8 6 36 36 H 1.08998 * 109.47399 * 69.99719 * 11 8 6 37 37 H 0.97005 * 120.00003 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.52017 * 297.07298 * 20 6 5 39 39 H 1.09001 * 109.52343 * 176.88155 * 20 6 5 40 40 H 1.09001 * 109.47575 * 62.37704 * 21 20 6 41 41 H 1.08996 * 109.47807 * 182.41186 * 21 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6060 1.9816 0.8420 5 6 3.5659 1.4444 0.1243 6 6 4.0736 2.8883 0.0630 7 1 3.6801 3.4495 0.9107 8 7 5.5419 2.8952 0.1058 9 6 6.0549 4.2485 0.3579 10 6 5.8632 4.5996 1.8348 11 6 6.1072 2.3400 -1.1312 12 6 7.5900 2.1349 -0.9580 13 1 8.0651 2.3917 -0.0227 14 6 8.3403 1.6193 -1.9935 15 7 7.7619 1.3070 -3.1326 16 14 10.1785 1.3657 -1.7791 17 1 10.4314 0.0025 -1.2470 18 1 10.8557 1.5180 -3.0919 19 1 10.7099 2.3748 -0.8279 20 6 3.5959 3.5309 -1.2428 21 6 2.0688 3.4483 -1.3144 22 8 1.6622 2.0816 -1.2210 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.8545 0.9969 1.0755 29 1 3.9989 0.8711 -0.6953 30 1 7.1156 4.2871 0.1100 31 1 5.5113 4.9640 -0.2592 32 1 4.8131 4.4823 2.1027 33 1 6.4713 3.9348 2.4482 34 1 6.1684 5.6320 2.0054 35 1 5.6314 1.3843 -1.3511 36 1 5.9298 3.0321 -1.9544 37 1 8.2898 0.9447 -3.8613 38 1 4.0295 2.9996 -2.0901 39 1 3.9058 4.5756 -1.2694 40 1 1.6352 4.0138 -0.4895 41 1 1.7262 3.8656 -2.2612 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170224730.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:52:10 Heat of formation + Delta-G solvation = -80.597121 kcal Electronic energy + Delta-G solvation = -18606.612496 eV Core-core repulsion = 15906.010717 eV Total energy + Delta-G solvation = -2700.601779 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.92241 -38.35530 -34.91486 -34.80435 -33.30607 -31.24148 -30.71619 -28.33320 -25.63202 -24.61045 -24.28173 -22.90403 -21.72586 -20.15080 -18.55744 -17.40218 -17.15945 -16.76708 -16.08723 -15.76918 -15.54104 -15.10155 -14.81467 -14.53410 -14.36668 -14.07539 -14.04732 -13.60404 -12.94588 -12.85712 -12.77932 -12.63330 -12.51983 -12.39056 -12.31602 -11.95036 -11.88089 -11.81572 -11.62743 -11.48270 -11.21362 -10.96004 -10.59379 -10.43705 -8.90444 -8.20184 -6.30081 1.38833 1.40420 1.51351 2.39122 2.87020 3.11431 3.24428 3.78998 3.86388 3.98817 4.16268 4.21195 4.21495 4.35262 4.41013 4.45602 4.51568 4.59327 4.70852 4.75732 4.79837 4.87058 4.94914 5.01164 5.11746 5.13726 5.14336 5.18990 5.23668 5.26408 5.37952 5.41408 5.48943 5.51030 5.66060 6.09517 6.34704 6.41283 6.70241 6.87973 7.39402 8.90469 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.006649 C = 0.005902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.962622 B = 4210.361422 C = 4742.905414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.097 3.903 4 H 0.077 0.923 5 C -0.135 4.135 6 C 0.083 3.917 7 H 0.094 0.906 8 N -0.537 5.537 9 C 0.050 3.950 10 C -0.130 4.130 11 C 0.214 3.786 12 C -0.523 4.523 13 H 0.061 0.939 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.264 1.264 20 C -0.185 4.185 21 C 0.073 3.927 22 O -0.396 6.396 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.089 0.911 28 H 0.079 0.921 29 H 0.038 0.962 30 H 0.055 0.945 31 H 0.025 0.975 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.002 0.998 36 H -0.037 1.037 37 H 0.263 0.737 38 H 0.039 0.961 39 H 0.071 0.929 40 H 0.073 0.927 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.387 3.534 8.568 15.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.039 3.961 4 H 0.095 0.905 5 C -0.173 4.173 6 C -0.025 4.025 7 H 0.112 0.888 8 N -0.260 5.260 9 C -0.078 4.078 10 C -0.188 4.188 11 C 0.088 3.912 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.197 4.197 15 N -0.576 5.576 16 Si 0.792 3.208 17 H -0.199 1.199 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.224 4.224 21 C -0.004 4.004 22 O -0.316 6.316 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.098 0.902 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.020 0.980 36 H -0.020 1.020 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.283 3.075 8.659 15.339 hybrid contribution 1.227 0.316 -1.176 1.728 sum -11.056 3.391 7.483 13.774 Atomic orbital electron populations 1.21665 0.93933 1.02141 1.02128 1.21581 0.97613 0.93643 1.02668 1.22231 0.92097 0.94859 0.86929 0.90517 1.22221 0.96306 0.96605 1.02207 1.21808 0.88289 0.96200 0.96239 0.88760 1.62254 1.05251 1.21473 1.36982 1.22036 0.99743 0.88531 0.97469 1.21683 1.01856 1.01034 0.94182 1.19293 0.93882 0.92546 0.85504 1.21526 0.93844 1.41660 0.99142 0.92109 1.25908 1.03765 0.95286 0.94740 1.70105 1.37835 1.44964 1.04672 0.85413 0.79062 0.78826 0.77498 1.19928 1.20829 1.18776 1.22822 0.98571 1.01287 0.99759 1.22533 0.91901 0.82854 1.03098 1.87874 1.78243 1.25567 1.39922 0.91711 0.91678 0.93197 0.93053 0.89233 0.90209 0.94365 0.92637 0.95692 0.92097 0.93083 0.91029 0.98000 1.01982 0.92824 0.94258 0.91084 0.90928 0.88262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.81 71.98 0.71 -2.13 16 2 C -0.12 -2.90 5.64 30.60 0.17 -2.73 16 3 C 0.10 2.70 2.64 30.62 0.08 2.78 16 4 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 5 C -0.14 -4.69 4.76 30.68 0.15 -4.55 16 6 C 0.08 2.96 2.17 45.03 0.10 3.05 16 7 H 0.09 2.84 6.54 -2.38 -0.02 2.82 16 8 N -0.54 -23.22 4.36 -874.81 -3.81 -27.03 16 9 C 0.05 1.93 5.43 86.31 0.47 2.40 16 10 C -0.13 -3.79 10.08 71.98 0.73 -3.07 16 11 C 0.21 11.62 3.56 85.56 0.30 11.92 16 12 C -0.52 -30.30 8.23 25.60 0.21 -30.08 16 13 H 0.06 3.46 7.31 -2.91 -0.02 3.43 16 14 C 0.00 0.05 5.46 84.66 0.46 0.51 16 15 N -0.94 -57.75 13.29 21.45 0.28 -57.46 16 16 Si 0.97 45.17 29.54 68.60 2.03 47.19 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 19 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 20 C -0.19 -6.50 4.69 30.69 0.14 -6.35 16 21 C 0.07 2.04 6.84 72.01 0.49 2.53 16 22 O -0.40 -12.43 9.94 -148.98 -1.48 -13.91 16 23 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.05 1.11 7.82 -2.38 -0.02 1.09 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 29 H 0.04 1.64 6.38 -2.39 -0.02 1.62 16 30 H 0.06 2.44 6.58 -2.39 -0.02 2.42 16 31 H 0.02 0.92 6.44 -2.38 -0.02 0.90 16 32 H 0.06 1.58 6.66 -2.39 -0.02 1.56 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.00 0.12 6.20 -2.39 -0.01 0.10 16 36 H -0.04 -2.22 6.77 -2.39 -0.02 -2.24 16 37 H 0.26 15.29 8.31 -92.70 -0.77 14.52 16 38 H 0.04 1.73 6.36 -2.38 -0.02 1.71 16 39 H 0.07 2.37 6.74 -2.39 -0.02 2.36 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 Total: -1.00 -66.34 311.29 2.01 -64.34 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: 0.98 Total: 12.59 kcal Atomic # 6 Polarization: -29.73 SS G_CDS: 4.01 Total: -25.72 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -3.53 Total: -84.50 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -1.48 Total: -13.91 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -66.34 2.01 -64.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170224730.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.261 kcal (2) G-P(sol) polarization free energy of solvation -66.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds