Wall clock time and date at job start Sun Mar 29 2020 22:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 C 1.53004 * 109.47162 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47179 * 179.97438 * 4 3 2 6 6 C 1.36933 * 120.00310 * 269.99797 * 5 4 3 7 7 H 1.08003 * 120.00486 * 141.95738 * 6 5 4 8 8 C 1.38815 * 119.99793 * 321.96512 * 6 5 4 9 9 N 1.31621 * 120.00201 * 157.13720 * 8 6 5 10 10 Si 1.86807 * 119.99707 * 337.13015 * 8 6 5 11 11 H 1.48500 * 109.46793 * 95.62586 * 10 8 6 12 12 H 1.48499 * 109.46892 * 215.62451 * 10 8 6 13 13 H 1.48495 * 109.46990 * 335.62561 * 10 8 6 14 14 C 1.46501 * 120.00120 * 89.99620 * 5 4 3 15 15 H 1.09000 * 109.54057 * 2.35350 * 14 5 4 16 16 C 1.54203 * 109.54021 * 242.19085 * 14 5 4 17 17 C 1.46292 * 111.98765 * 162.52080 * 16 14 5 18 18 C 1.54118 * 112.20033 * 61.41782 * 17 16 14 19 19 O 1.40325 * 108.69959 * 280.43697 * 18 17 16 20 20 C 1.43992 * 116.58048 * 95.04610 * 19 18 17 21 21 C 1.50627 * 109.54069 * 122.51886 * 14 5 4 22 22 H 1.09002 * 109.47304 * 300.00558 * 1 2 3 23 23 H 1.08999 * 109.46453 * 60.00266 * 1 2 3 24 24 H 1.08998 * 109.47187 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47593 * 239.99699 * 2 1 3 26 26 H 1.09001 * 109.46591 * 119.99200 * 2 1 3 27 27 H 1.09002 * 109.47466 * 59.99542 * 3 2 1 28 28 H 1.09004 * 109.46612 * 299.99633 * 3 2 1 29 29 H 1.08997 * 109.46870 * 59.99544 * 4 3 2 30 30 H 1.08999 * 109.46453 * 299.99734 * 4 3 2 31 31 H 0.96994 * 119.99817 * 179.97438 * 9 8 6 32 32 H 1.08999 * 108.98145 * 283.16652 * 16 14 5 33 33 H 1.08997 * 108.97948 * 41.96312 * 16 14 5 34 34 H 1.08998 * 108.93646 * 182.11356 * 17 16 14 35 35 H 1.08997 * 108.93359 * 300.71466 * 17 16 14 36 36 H 1.08994 * 109.60320 * 40.20077 * 18 17 16 37 37 H 1.09000 * 109.59860 * 160.67504 * 18 17 16 38 38 H 1.09001 * 108.69301 * 78.90589 * 20 19 18 39 39 H 1.09001 * 108.69482 * 197.00280 * 20 19 18 40 40 H 1.09000 * 108.87603 * 331.05935 * 21 14 5 41 41 H 1.08999 * 108.88047 * 89.51128 * 21 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 7 4.0584 2.8237 -0.0013 6 6 4.2862 3.4689 -1.1874 7 1 4.0454 4.5170 -1.2870 8 6 4.8265 2.7757 -2.2619 9 7 4.6407 3.2147 -3.4888 10 14 5.8174 1.2199 -1.9666 11 1 4.9354 0.0350 -2.1189 12 1 6.9243 1.1433 -2.9536 13 1 6.3801 1.2448 -0.5926 14 6 4.3031 3.5147 1.2671 15 1 4.1076 2.8348 2.0964 16 6 3.3729 4.7399 1.3747 17 6 3.2656 5.2270 2.7500 18 6 4.6247 5.6871 3.3125 19 8 5.3518 4.5559 3.7136 20 6 6.2852 4.0179 2.7583 21 6 5.7358 3.9763 1.3212 22 1 -0.3634 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5137 0.8901 27 1 1.6767 1.9564 0.8899 28 1 1.6767 1.9563 -0.8901 29 1 3.9330 0.9287 -0.8908 30 1 3.9337 0.9286 0.8892 31 1 5.0186 2.7305 -4.2395 32 1 3.7647 5.5389 0.7453 33 1 2.3802 4.4636 1.0195 34 1 2.5703 6.0660 2.7748 35 1 2.8748 4.4272 3.3790 36 1 5.1776 6.2223 2.5407 37 1 4.4632 6.3408 4.1697 38 1 7.1879 4.6287 2.7698 39 1 6.5469 3.0033 3.0588 40 1 6.3476 3.2978 0.7267 41 1 5.8009 4.9756 0.8909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170831437.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:40 Heat of formation + Delta-G solvation = -43.808849 kcal Electronic energy + Delta-G solvation = -18861.923278 eV Core-core repulsion = 16162.916758 eV Total energy + Delta-G solvation = -2699.006520 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.10695 -36.62309 -34.46286 -33.11629 -31.90796 -30.84121 -27.98458 -26.11848 -25.06950 -23.79654 -21.61087 -20.66038 -20.23748 -19.34905 -16.57100 -16.19327 -15.92195 -15.35882 -14.73938 -14.54773 -13.94672 -13.74359 -13.38119 -13.00869 -12.82217 -12.54196 -12.37586 -12.12115 -11.83812 -11.43761 -11.29669 -11.09355 -10.92492 -10.61303 -10.47569 -10.30530 -10.25874 -10.11331 -9.99089 -9.79314 -9.58706 -9.36791 -9.06767 -8.45509 -6.75859 -5.97781 -3.37898 3.32029 3.46820 3.51145 4.13771 4.53954 4.84837 5.24766 5.29094 5.33792 5.42121 5.43276 5.48037 5.54423 5.62388 5.74184 5.81870 5.89887 5.96632 6.05102 6.15233 6.19394 6.27538 6.32948 6.36368 6.39266 6.44900 6.56031 6.58066 6.64096 6.73305 6.77706 6.98180 7.06005 7.11196 7.15793 7.69554 8.10337 8.43714 9.04197 9.75755 10.18149 11.18136 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016994 B = 0.009945 C = 0.007496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.246537 B = 2814.732481 C = 3734.592902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C -0.132 4.132 4 C 0.138 3.862 5 N -0.603 5.603 6 C -0.259 4.259 7 H 0.077 0.923 8 C 0.036 3.964 9 N -0.901 5.901 10 Si 0.874 3.126 11 H -0.287 1.287 12 H -0.304 1.304 13 H -0.269 1.269 14 C 0.186 3.814 15 H 0.055 0.945 16 C -0.129 4.129 17 C -0.142 4.142 18 C 0.068 3.932 19 O -0.391 6.391 20 C 0.065 3.935 21 C -0.159 4.159 22 H 0.049 0.951 23 H 0.053 0.947 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.035 0.965 31 H 0.262 0.738 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.128 -0.520 11.177 11.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.172 4.172 4 C 0.013 3.987 5 N -0.324 5.324 6 C -0.387 4.387 7 H 0.094 0.906 8 C -0.164 4.164 9 N -0.542 5.542 10 Si 0.704 3.296 11 H -0.215 1.215 12 H -0.232 1.232 13 H -0.194 1.194 14 C 0.079 3.921 15 H 0.074 0.926 16 C -0.168 4.168 17 C -0.181 4.181 18 C -0.009 4.009 19 O -0.310 6.310 20 C -0.011 4.011 21 C -0.198 4.198 22 H 0.068 0.932 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.097 -0.612 11.149 11.361 hybrid contribution 0.597 -0.739 -0.450 1.052 sum -1.500 -1.351 10.699 10.888 Atomic orbital electron populations 1.21749 0.96568 1.00596 1.01590 1.21530 0.95255 0.98436 1.01175 1.22132 0.98610 0.94607 1.01889 1.21201 0.92093 0.86604 0.98797 1.44279 1.75128 1.11132 1.01909 1.18660 1.36403 0.96572 0.87099 0.90565 1.25468 0.98006 0.97673 0.95240 1.69882 1.45293 1.41183 0.97862 0.86984 0.80681 0.84197 0.77699 1.21482 1.23218 1.19433 1.19989 0.91239 0.92630 0.88239 0.92634 1.21012 1.01328 0.99440 0.95013 1.21100 0.97616 1.01049 0.98287 1.22314 0.91840 0.87882 0.98868 1.87381 1.56312 1.45832 1.41482 1.23000 0.90397 0.98215 0.89520 1.22424 0.99742 1.03012 0.94612 0.93150 0.92823 0.93581 0.92491 0.92845 0.93085 0.91459 0.93055 0.94709 0.92854 0.92487 0.92013 0.92249 0.91853 0.93043 0.90753 0.93945 0.90219 0.90047 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.91 37.16 0.37 -1.67 16 2 C -0.13 -2.02 5.93 -26.73 -0.16 -2.18 16 3 C -0.13 -2.53 5.54 -26.73 -0.15 -2.67 16 4 C 0.14 2.98 4.49 -4.04 -0.02 2.96 16 5 N -0.60 -13.82 1.91 -166.30 -0.32 -14.14 16 6 C -0.26 -6.94 8.89 -15.06 -0.13 -7.07 16 7 H 0.08 2.23 7.56 -52.48 -0.40 1.83 16 8 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 9 N -0.90 -27.14 13.97 55.49 0.78 -26.36 16 10 Si 0.87 22.00 25.10 -169.99 -4.27 17.73 16 11 H -0.29 -7.10 6.68 56.52 0.38 -6.72 16 12 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 13 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 14 C 0.19 3.64 2.33 -68.49 -0.16 3.48 16 15 H 0.06 1.07 7.47 -51.93 -0.39 0.68 16 16 C -0.13 -2.31 4.36 -29.29 -0.13 -2.44 16 17 C -0.14 -2.10 5.47 -29.34 -0.16 -2.26 16 18 C 0.07 0.96 6.38 37.74 0.24 1.20 16 19 O -0.39 -6.20 10.17 -33.69 -0.34 -6.54 16 20 C 0.07 1.01 6.67 37.63 0.25 1.26 16 21 C -0.16 -2.95 4.39 -27.45 -0.12 -3.07 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 29 H 0.05 1.22 3.38 -51.93 -0.18 1.04 16 30 H 0.03 0.69 7.90 -51.93 -0.41 0.28 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.06 1.09 7.29 -51.93 -0.38 0.71 16 33 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.95 8.13 -51.93 -0.42 0.52 16 36 H 0.05 0.73 6.98 -51.93 -0.36 0.36 16 37 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.69 7.94 -51.93 -0.41 1.28 16 41 H 0.06 1.16 6.84 -51.93 -0.36 0.81 16 LS Contribution 311.18 15.07 4.69 4.69 Total: -1.00 -28.91 311.18 -7.25 -36.16 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -7.53 Total: -0.03 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: -0.26 Total: -11.52 kcal Atomic # 7 Polarization: -40.96 SS G_CDS: 0.46 Total: -40.50 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.34 Total: -6.54 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.27 Total: 17.73 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.91 -7.25 -36.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831437.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.645 kcal (2) G-P(sol) polarization free energy of solvation -28.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds