Wall clock time and date at job start Sun Mar 29 2020 22:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47229 * 2 1 4 4 C 1.53001 * 109.47229 * 180.02562 * 3 2 1 5 5 N 1.46499 * 109.47015 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00286 * 263.24748 * 5 4 3 7 7 H 1.07998 * 120.00523 * 187.86061 * 6 5 4 8 8 C 1.38813 * 119.99549 * 7.85905 * 6 5 4 9 9 N 1.31621 * 120.00055 * 26.57511 * 8 6 5 10 10 Si 1.86798 * 119.99960 * 206.56716 * 8 6 5 11 11 H 1.48504 * 109.47131 * 84.99518 * 10 8 6 12 12 H 1.48505 * 109.47198 * 204.99037 * 10 8 6 13 13 H 1.48500 * 109.47276 * 324.99276 * 10 8 6 14 14 C 1.46503 * 120.00172 * 83.25334 * 5 4 3 15 15 H 1.09000 * 108.75363 * 1.64606 * 14 5 4 16 16 C 1.50280 * 108.79170 * 119.99435 * 14 5 4 17 17 C 1.54264 * 108.48658 * 212.87143 * 16 14 5 18 18 C 1.45979 * 111.73861 * 281.94629 * 17 16 14 19 19 O 1.44235 * 112.02519 * 60.10924 * 18 17 16 20 20 C 1.40038 * 112.34041 * 277.30341 * 19 18 17 21 21 C 1.54346 * 112.50510 * 97.21913 * 20 19 18 22 22 H 1.08994 * 109.47085 * 300.00041 * 1 2 3 23 23 H 1.09003 * 109.47253 * 60.00108 * 1 2 3 24 24 H 1.09004 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09007 * 109.46874 * 240.00102 * 2 1 3 26 26 H 1.08998 * 109.46732 * 120.00379 * 2 1 3 27 27 H 1.09003 * 109.47146 * 59.99743 * 3 2 1 28 28 H 1.09007 * 109.47361 * 299.99909 * 3 2 1 29 29 H 1.08994 * 109.47085 * 59.99959 * 4 3 2 30 30 H 1.09003 * 109.47253 * 299.99892 * 4 3 2 31 31 H 0.97000 * 120.00279 * 179.97438 * 9 8 6 32 32 H 1.09005 * 109.63326 * 93.17469 * 16 14 5 33 33 H 1.08999 * 109.80298 * 332.67700 * 16 14 5 34 34 H 1.08998 * 109.02357 * 161.36776 * 17 16 14 35 35 H 1.08996 * 109.02249 * 42.53279 * 17 16 14 36 36 H 1.09001 * 108.95751 * 180.73182 * 18 17 16 37 37 H 1.08996 * 108.95954 * 299.48164 * 18 17 16 38 38 H 1.09002 * 108.89415 * 336.44581 * 20 19 18 39 39 H 1.08991 * 108.90022 * 218.00280 * 20 19 18 40 40 H 1.09001 * 109.08940 * 198.80590 * 21 20 19 41 41 H 1.09002 * 109.03235 * 79.78932 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0583 2.8236 0.0000 6 6 4.4175 3.4234 -1.1775 7 1 4.8952 4.3920 -1.1665 8 6 4.1677 2.7865 -2.3853 9 7 3.1778 1.9244 -2.4822 10 14 5.2361 3.1530 -3.8730 11 1 6.4485 2.2962 -3.8349 12 1 4.4702 2.8718 -5.1139 13 1 5.6391 4.5821 -3.8531 14 6 4.1625 3.5632 1.2603 15 1 3.8604 2.9078 2.0772 16 6 5.5952 3.9667 1.4679 17 6 5.8904 3.9613 2.9820 18 6 5.3605 5.1515 3.6404 19 8 3.9297 5.2593 3.4933 20 6 3.5620 5.8306 2.2687 21 6 3.1978 4.7703 1.2078 22 1 -0.3633 0.5138 0.8899 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5139 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9330 0.9287 -0.8908 30 1 3.9338 0.9285 0.8891 31 1 3.0029 1.4796 -3.3263 32 1 5.7556 4.9675 1.0670 33 1 6.2545 3.2602 0.9635 34 1 6.9691 3.9220 3.1335 35 1 5.4376 3.0764 3.4291 36 1 5.6049 5.1075 4.7017 37 1 5.8286 6.0347 3.2057 38 1 4.3918 6.4313 1.8962 39 1 2.7019 6.4810 2.4267 40 1 3.2486 5.2242 0.2181 41 1 2.1808 4.4219 1.3880 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170831438.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:42 Heat of formation + Delta-G solvation = -35.796318 kcal Electronic energy + Delta-G solvation = -18881.957453 eV Core-core repulsion = 16183.298383 eV Total energy + Delta-G solvation = -2698.659070 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.17814 -36.42736 -34.05751 -32.91921 -31.96377 -30.03792 -27.74363 -26.18101 -24.68200 -23.55598 -21.35448 -20.88878 -19.77846 -19.20803 -16.33954 -16.09434 -15.90117 -15.03897 -14.49275 -14.18244 -13.92787 -13.35850 -13.16706 -12.85195 -12.78828 -12.21926 -11.94584 -11.76210 -11.56698 -11.35352 -10.96701 -10.68311 -10.59468 -10.48945 -10.37528 -10.25556 -9.99093 -9.95983 -9.81556 -9.69137 -9.40369 -9.11751 -9.07065 -8.21210 -6.75667 -5.69887 -2.97104 3.42505 3.50327 3.51475 4.21108 4.55864 5.03527 5.36064 5.39770 5.44319 5.56681 5.62493 5.65079 5.84153 5.84543 5.88009 6.00992 6.05135 6.13804 6.21973 6.33143 6.41135 6.50150 6.55507 6.61032 6.71210 6.79135 6.80959 6.85297 6.98922 7.12536 7.19044 7.26492 7.40284 7.61819 7.76788 7.87333 8.16278 8.44713 9.32813 9.98234 10.44180 11.34341 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.016694 B = 0.009548 C = 0.006861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.846652 B = 2931.974047 C = 4080.152815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.171 3.829 5 N -0.598 5.598 6 C -0.241 4.241 7 H 0.071 0.929 8 C -0.003 4.003 9 N -0.892 5.892 10 Si 0.887 3.113 11 H -0.291 1.291 12 H -0.295 1.295 13 H -0.284 1.284 14 C 0.183 3.817 15 H 0.050 0.950 16 C -0.121 4.121 17 C -0.155 4.155 18 C 0.064 3.936 19 O -0.376 6.376 20 C 0.061 3.939 21 C -0.154 4.154 22 H 0.043 0.957 23 H 0.051 0.949 24 H 0.038 0.962 25 H 0.058 0.942 26 H 0.037 0.963 27 H 0.017 0.983 28 H 0.096 0.904 29 H 0.088 0.912 30 H -0.001 1.001 31 H 0.250 0.750 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.043 0.957 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.326 2.563 8.661 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.153 4.153 3 C -0.159 4.159 4 C 0.046 3.954 5 N -0.318 5.318 6 C -0.370 4.370 7 H 0.089 0.911 8 C -0.200 4.200 9 N -0.538 5.538 10 Si 0.718 3.282 11 H -0.219 1.219 12 H -0.222 1.222 13 H -0.210 1.210 14 C 0.075 3.925 15 H 0.069 0.931 16 C -0.160 4.160 17 C -0.193 4.193 18 C -0.012 4.012 19 O -0.294 6.294 20 C -0.017 4.017 21 C -0.194 4.194 22 H 0.062 0.938 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.036 0.964 28 H 0.115 0.885 29 H 0.106 0.894 30 H 0.017 0.983 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.147 2.407 8.646 9.047 hybrid contribution 0.580 0.262 -1.130 1.297 sum 1.728 2.669 7.515 8.160 Atomic orbital electron populations 1.21736 0.97574 0.99775 1.01118 1.21407 0.94218 0.99516 1.00160 1.22176 0.98936 0.93718 1.01079 1.20871 0.91788 0.84648 0.98081 1.44474 1.75444 1.10157 1.01748 1.19116 1.31223 1.02880 0.83732 0.91103 1.24647 0.98076 1.00356 0.96935 1.70166 1.26732 1.32267 1.24590 0.86511 0.81105 0.77635 0.82946 1.21853 1.22174 1.20981 1.20060 0.91647 0.91873 0.88914 0.93122 1.21816 0.99567 1.01672 0.92957 1.21198 1.00562 0.99559 0.97969 1.21496 0.81735 0.97681 1.00285 1.87738 1.21771 1.83595 1.36331 1.22393 0.99171 0.95071 0.85018 1.23111 1.00345 0.97456 0.98461 0.93824 0.92956 0.94291 0.92323 0.94396 0.96448 0.88548 0.89387 0.98306 0.93988 0.92945 0.90736 0.91711 0.91461 0.90433 0.93517 0.93843 0.91453 0.90449 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.44 9.91 37.16 0.37 -2.08 16 2 C -0.11 -2.22 5.93 -26.73 -0.16 -2.38 16 3 C -0.12 -2.69 5.06 -26.73 -0.14 -2.83 16 4 C 0.17 4.09 4.81 -4.04 -0.02 4.07 16 5 N -0.60 -14.37 2.30 -166.24 -0.38 -14.75 16 6 C -0.24 -6.27 8.16 -15.06 -0.12 -6.39 16 7 H 0.07 1.84 7.68 -52.49 -0.40 1.44 16 8 C 0.00 -0.08 4.86 -17.43 -0.08 -0.17 16 9 N -0.89 -24.35 8.75 55.49 0.49 -23.86 16 10 Si 0.89 21.39 29.63 -169.99 -5.04 16.35 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.18 3.74 2.27 -68.44 -0.16 3.59 16 15 H 0.05 1.07 7.02 -51.93 -0.36 0.70 16 16 C -0.12 -2.19 4.54 -27.42 -0.12 -2.31 16 17 C -0.15 -2.26 5.52 -29.40 -0.16 -2.42 16 18 C 0.06 0.87 6.12 33.83 0.21 1.08 16 19 O -0.38 -6.15 10.35 -33.02 -0.34 -6.49 16 20 C 0.06 0.99 6.09 37.86 0.23 1.22 16 21 C -0.15 -2.98 5.79 -25.18 -0.15 -3.12 16 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.10 2.50 6.41 -51.93 -0.33 2.16 16 29 H 0.09 2.33 5.81 -51.93 -0.30 2.03 16 30 H 0.00 -0.03 8.03 -51.93 -0.42 -0.45 16 31 H 0.25 6.75 8.31 -40.82 -0.34 6.42 16 32 H 0.05 0.94 7.07 -51.93 -0.37 0.57 16 33 H 0.07 1.47 7.94 -51.93 -0.41 1.06 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.03 7.53 -51.93 -0.39 0.63 16 36 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.05 0.59 7.34 -51.93 -0.38 0.20 16 38 H 0.04 0.65 6.53 -51.93 -0.34 0.31 16 39 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 1.64 7.12 -51.93 -0.37 1.27 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 309.63 15.07 4.67 4.67 Total: -1.00 -27.07 309.63 -8.36 -35.42 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.44 Total: 0.40 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -0.30 Total: -11.74 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.10 Total: -38.61 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.34 Total: -6.49 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.35 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -27.07 -8.36 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170831438.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.374 kcal (2) G-P(sol) polarization free energy of solvation -27.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds