Wall clock time and date at job start Sun Mar 29 2020 22:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47400 * 2 1 4 4 C 1.53000 * 109.47400 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.47302 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00025 * 264.50774 * 5 4 3 7 7 H 1.07996 * 119.99621 * 146.56672 * 6 5 4 8 8 C 1.38810 * 119.99992 * 326.56942 * 6 5 4 9 9 N 1.31617 * 119.99767 * 337.27797 * 8 6 5 10 10 Si 1.86801 * 119.99904 * 157.28331 * 8 6 5 11 11 H 1.48499 * 109.47247 * 89.99703 * 10 8 6 12 12 H 1.48503 * 109.46700 * 210.00026 * 10 8 6 13 13 H 1.48499 * 109.47033 * 329.99656 * 10 8 6 14 14 C 1.46500 * 119.99713 * 84.51091 * 5 4 3 15 15 H 1.08998 * 111.02543 * 4.21855 * 14 5 4 16 16 C 1.54943 * 111.12582 * 128.44272 * 14 5 4 17 17 O 1.43653 * 105.13650 * 154.35993 * 16 14 5 18 18 C 1.43236 * 109.96837 * 335.57217 * 17 16 14 19 19 C 1.53003 * 109.82998 * 242.19452 * 18 17 16 20 20 C 1.53002 * 109.82907 * 121.22766 * 18 17 16 21 21 C 1.54376 * 107.59292 * 1.71280 * 18 17 16 22 22 H 1.08999 * 109.46811 * 60.00087 * 1 2 3 23 23 H 1.08998 * 109.47185 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47039 * 300.00104 * 1 2 3 25 25 H 1.09000 * 109.47542 * 240.00047 * 2 1 3 26 26 H 1.09005 * 109.47420 * 120.00224 * 2 1 3 27 27 H 1.08999 * 109.47110 * 59.99939 * 3 2 1 28 28 H 1.09003 * 109.47410 * 300.00118 * 3 2 1 29 29 H 1.09000 * 109.47542 * 60.00047 * 4 3 2 30 30 H 1.09001 * 109.47296 * 299.99728 * 4 3 2 31 31 H 0.97003 * 119.99801 * 180.02562 * 9 8 6 32 32 H 1.09002 * 110.31343 * 273.27618 * 16 14 5 33 33 H 1.09001 * 110.30746 * 35.34791 * 16 14 5 34 34 H 1.08999 * 109.47232 * 178.13317 * 19 18 17 35 35 H 1.08999 * 109.47236 * 298.14238 * 19 18 17 36 36 H 1.09001 * 109.46825 * 58.13871 * 19 18 17 37 37 H 1.08994 * 109.46873 * 301.86618 * 20 18 17 38 38 H 1.09002 * 109.47307 * 61.86319 * 20 18 17 39 39 H 1.08993 * 109.47284 * 181.86261 * 20 18 17 40 40 H 1.09008 * 110.84587 * 263.16484 * 21 18 17 41 41 H 1.08998 * 110.85088 * 139.54919 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.3932 3.4320 -1.1803 7 1 4.2318 4.4925 -1.3058 8 6 4.9398 2.6858 -2.2152 9 7 5.5452 1.5461 -1.9562 10 14 4.8164 3.2990 -3.9753 11 1 5.9983 4.1411 -4.2902 12 1 4.7740 2.1391 -4.9017 13 1 3.5787 4.1042 -4.1333 14 6 4.1887 3.5539 1.2633 15 1 3.9552 2.9114 2.1123 16 6 5.6005 4.1762 1.4056 17 8 5.4280 5.3011 2.2822 18 6 4.0726 5.7608 2.2271 19 6 4.0326 7.1970 1.7009 20 6 3.4467 5.6998 3.6219 21 6 3.3026 4.8294 1.2664 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9331 0.9287 -0.8908 30 1 3.9338 0.9285 0.8891 31 1 5.9276 1.0248 -2.6794 32 1 6.2892 3.4553 1.8463 33 1 5.9687 4.5050 0.4338 34 1 2.9969 7.5293 1.6300 35 1 4.5776 7.8493 2.3832 36 1 4.4948 7.2354 0.7145 37 1 3.4938 4.6775 3.9968 38 1 3.9945 6.3593 4.2951 39 1 2.4061 6.0194 3.5675 40 1 3.2445 5.2639 0.2684 41 1 2.3077 4.6097 1.6535 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172288972.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:45 Heat of formation + Delta-G solvation = -49.942556 kcal Electronic energy + Delta-G solvation = -18684.445236 eV Core-core repulsion = 15985.172739 eV Total energy + Delta-G solvation = -2699.272497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.20876 -36.05975 -33.82876 -32.58967 -31.62008 -29.47509 -27.35126 -26.98132 -25.03411 -24.29915 -21.99549 -20.33852 -19.88438 -19.32179 -16.54745 -15.65692 -15.15337 -14.70770 -14.49210 -14.10786 -13.54161 -13.42447 -13.20085 -12.87995 -12.77880 -12.24698 -12.15093 -11.87148 -11.70998 -11.45101 -11.22797 -11.14474 -10.99898 -10.83326 -10.55489 -10.45525 -10.28019 -10.17240 -10.06081 -9.96732 -9.57523 -9.44909 -8.80568 -8.46242 -6.63042 -5.83103 -3.35627 3.33629 3.41804 3.44748 4.34347 4.53420 5.17509 5.21075 5.34364 5.38892 5.47656 5.50207 5.68429 5.71378 5.82322 5.88528 5.92327 6.04905 6.08172 6.12844 6.21635 6.26359 6.26972 6.37429 6.45604 6.49470 6.55037 6.57543 6.62069 6.77445 6.85959 6.89474 6.93290 7.05850 7.27483 7.73342 7.76437 7.82892 8.46544 9.15515 9.78839 10.34267 11.17622 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.015423 B = 0.009645 C = 0.006849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1815.012574 B = 2902.497171 C = 4087.165015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.134 4.134 4 C 0.144 3.856 5 N -0.571 5.571 6 C -0.256 4.256 7 H 0.063 0.937 8 C 0.011 3.989 9 N -0.886 5.886 10 Si 0.894 3.106 11 H -0.286 1.286 12 H -0.289 1.289 13 H -0.278 1.278 14 C 0.148 3.852 15 H 0.062 0.938 16 C 0.039 3.961 17 O -0.388 6.388 18 C 0.099 3.901 19 C -0.150 4.150 20 C -0.147 4.147 21 C -0.159 4.159 22 H 0.050 0.950 23 H 0.044 0.956 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.019 0.981 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.307 2.657 6.378 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.174 4.174 4 C 0.019 3.981 5 N -0.290 5.290 6 C -0.385 4.385 7 H 0.080 0.920 8 C -0.189 4.189 9 N -0.528 5.528 10 Si 0.724 3.276 11 H -0.213 1.213 12 H -0.215 1.215 13 H -0.204 1.204 14 C 0.039 3.961 15 H 0.080 0.920 16 C -0.039 4.039 17 O -0.307 6.307 18 C 0.060 3.940 19 C -0.207 4.207 20 C -0.205 4.205 21 C -0.199 4.199 22 H 0.069 0.931 23 H 0.063 0.937 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.119 0.881 30 H 0.037 0.963 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.043 2.612 6.381 9.168 hybrid contribution -0.199 0.173 -1.076 1.108 sum -6.242 2.785 5.305 8.652 Atomic orbital electron populations 1.21768 0.97024 1.00456 1.01302 1.21474 0.94619 0.98566 1.01329 1.22193 1.00335 0.94233 1.00595 1.21055 0.89217 0.85943 1.01930 1.43776 1.73189 1.11405 1.00595 1.18919 1.35629 0.93995 0.89996 0.91978 1.25053 0.96913 0.97815 0.99091 1.70001 1.35971 1.15671 1.31168 0.86437 0.78150 0.77959 0.85100 1.21277 1.21478 1.20373 1.21946 0.92012 0.92116 0.90057 0.91959 1.23851 0.99264 0.86745 0.93996 1.88319 1.27217 1.49259 1.65932 1.21931 0.83407 0.93985 0.94707 1.22064 1.01239 0.95941 1.01473 1.22038 0.99797 1.02060 0.96580 1.23553 0.98926 0.97784 0.99588 0.93097 0.93663 0.93332 0.92326 0.92891 0.94184 0.92529 0.88083 0.96281 0.93515 0.91266 0.90723 0.92257 0.92819 0.92184 0.92427 0.92719 0.92215 0.90030 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.91 37.16 0.37 -1.68 16 2 C -0.12 -1.99 5.93 -26.73 -0.16 -2.15 16 3 C -0.13 -2.58 5.54 -26.73 -0.15 -2.73 16 4 C 0.14 3.28 5.22 -4.04 -0.02 3.26 16 5 N -0.57 -13.55 2.55 -163.11 -0.42 -13.96 16 6 C -0.26 -6.65 7.76 -15.06 -0.12 -6.76 16 7 H 0.06 1.63 6.81 -52.49 -0.36 1.27 16 8 C 0.01 0.30 4.91 -17.43 -0.09 0.22 16 9 N -0.89 -24.62 11.34 55.49 0.63 -23.99 16 10 Si 0.89 21.13 29.61 -169.99 -5.03 16.09 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.15 3.08 3.65 -65.68 -0.24 2.84 16 15 H 0.06 1.25 7.94 -51.93 -0.41 0.84 16 16 C 0.04 0.84 7.32 38.18 0.28 1.11 16 17 O -0.39 -7.68 10.68 -35.23 -0.38 -8.06 16 18 C 0.10 1.69 1.27 -89.90 -0.11 1.57 16 19 C -0.15 -2.26 8.75 37.16 0.33 -1.94 16 20 C -0.15 -2.10 8.73 37.16 0.32 -1.77 16 21 C -0.16 -2.93 5.67 -24.79 -0.14 -3.07 16 22 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.10 2.60 5.33 -51.93 -0.28 2.33 16 30 H 0.02 0.42 8.04 -51.93 -0.42 0.00 16 31 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.07 1.77 7.01 -51.93 -0.36 1.40 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.65 6.36 -51.92 -0.33 1.32 16 41 H 0.06 1.10 7.82 -51.93 -0.41 0.69 16 LS Contribution 321.76 15.07 4.85 4.85 Total: -1.00 -27.10 321.76 -7.69 -34.80 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -7.62 Total: 1.37 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 0.27 Total: -11.10 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.21 Total: -37.95 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.38 Total: -8.06 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -27.10 -7.69 -34.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172288972.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.147 kcal (2) G-P(sol) polarization free energy of solvation -27.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds