Wall clock time and date at job start Sun Mar 29 2020 22:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46960 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47069 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99971 * 95.53387 * 5 4 3 7 7 H 1.07994 * 120.00028 * 12.24521 * 6 5 4 8 8 C 1.38818 * 119.99545 * 192.24164 * 6 5 4 9 9 N 1.31618 * 120.00138 * 353.37753 * 8 6 5 10 10 Si 1.86795 * 119.99650 * 173.37490 * 8 6 5 11 11 H 1.48500 * 109.47392 * 90.00179 * 10 8 6 12 12 H 1.48496 * 109.47256 * 210.00030 * 10 8 6 13 13 H 1.48503 * 109.47298 * 329.99830 * 10 8 6 14 14 C 1.46500 * 119.99687 * 275.53407 * 5 4 3 15 15 H 1.08999 * 110.80144 * 127.53965 * 14 5 4 16 16 C 1.55001 * 110.90688 * 3.91170 * 14 5 4 17 17 O 1.44382 * 103.48775 * 204.77583 * 16 14 5 18 18 C 1.43741 * 106.97634 * 40.06298 * 17 16 14 19 19 C 1.53005 * 109.88078 * 92.90753 * 18 17 16 20 20 C 1.52997 * 109.87932 * 214.06318 * 18 17 16 21 21 C 1.54104 * 107.29427 * 333.48491 * 18 17 16 22 22 H 1.09002 * 109.47117 * 59.99927 * 1 2 3 23 23 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47173 * 299.99699 * 1 2 3 25 25 H 1.09002 * 109.47117 * 120.00073 * 2 1 3 26 26 H 1.08998 * 109.47398 * 239.99846 * 2 1 3 27 27 H 1.09002 * 109.47265 * 299.99982 * 3 2 1 28 28 H 1.09002 * 109.46931 * 60.00153 * 3 2 1 29 29 H 1.09002 * 109.47117 * 300.00073 * 4 3 2 30 30 H 1.08995 * 109.46936 * 59.99695 * 4 3 2 31 31 H 0.97001 * 119.99789 * 184.95900 * 9 8 6 32 32 H 1.08995 * 110.62187 * 323.27849 * 16 14 5 33 33 H 1.08997 * 110.61415 * 86.12121 * 16 14 5 34 34 H 1.08997 * 109.46869 * 64.80472 * 19 18 17 35 35 H 1.08997 * 109.47084 * 184.80928 * 19 18 17 36 36 H 1.09001 * 109.46549 * 304.80726 * 19 18 17 37 37 H 1.08996 * 109.47687 * 58.54534 * 20 18 17 38 38 H 1.09004 * 109.47588 * 178.54629 * 20 18 17 39 39 H 1.08997 * 109.46983 * 298.54267 * 20 18 17 40 40 H 1.09005 * 110.48911 * 243.35491 * 21 18 17 41 41 H 1.08998 * 110.48834 * 120.70499 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.3939 3.4308 1.1820 7 1 4.4899 2.8433 2.0830 8 6 4.6107 4.8014 1.2205 9 7 4.6226 5.4975 0.1036 10 14 4.8856 5.6577 2.8578 11 1 6.3368 5.6700 3.1726 12 1 4.3849 7.0533 2.7766 13 1 4.1535 4.9306 3.9258 14 6 4.1877 3.5555 -1.2613 15 1 3.6709 4.5137 -1.2081 16 6 3.6614 2.7084 -2.4479 17 8 4.3703 3.2452 -3.5854 18 6 5.7185 3.5009 -3.1573 19 6 6.6000 2.2880 -3.4617 20 6 6.2656 4.7379 -3.8723 21 6 5.6768 3.7501 -1.6371 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9330 0.9288 0.8909 30 1 3.9337 0.9285 -0.8890 31 1 4.8451 6.4415 0.1228 32 1 3.9050 1.6555 -2.3058 33 1 2.5859 2.8398 -2.5660 34 1 6.6627 2.1460 -4.5405 35 1 7.5989 2.4545 -3.0584 36 1 6.1663 1.3994 -3.0028 37 1 5.6281 5.5949 -3.6551 38 1 7.2783 4.9409 -3.5239 39 1 6.2803 4.5593 -4.9474 40 1 5.9984 4.7661 -1.4080 41 1 6.3001 3.0246 -1.1144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172288973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:47 Heat of formation + Delta-G solvation = -31.156813 kcal Electronic energy + Delta-G solvation = -18969.845633 eV Core-core repulsion = 16271.387747 eV Total energy + Delta-G solvation = -2698.457886 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.07516 -36.11755 -34.04860 -32.35199 -31.22018 -29.35502 -27.59921 -26.83822 -24.89877 -23.89318 -22.26702 -20.59680 -19.42027 -18.85197 -16.90645 -15.36830 -15.20664 -14.82203 -14.43010 -13.98676 -13.52839 -13.44853 -13.15985 -12.56372 -12.55132 -12.13402 -12.11863 -11.80824 -11.60919 -11.26323 -11.06255 -10.95200 -10.91304 -10.68351 -10.57644 -10.54256 -10.24073 -9.96400 -9.89370 -9.64012 -9.61055 -9.35396 -8.71369 -8.37124 -6.87343 -5.57674 -3.11689 3.38100 3.45373 3.46113 4.45989 4.66284 5.24155 5.37632 5.45515 5.53624 5.58980 5.61760 5.66909 5.84114 5.90491 6.04177 6.07562 6.12923 6.16094 6.24078 6.25597 6.27354 6.33860 6.37491 6.45107 6.52393 6.59836 6.62111 6.72108 6.74880 6.92588 7.04129 7.13499 7.18147 7.63427 7.79765 7.85184 8.10444 8.42077 9.29539 9.89167 10.32428 11.32358 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.012265 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.205909 B = 2282.350792 C = 4045.421010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.140 4.140 4 C 0.146 3.854 5 N -0.597 5.597 6 C -0.235 4.235 7 H 0.073 0.927 8 C -0.007 4.007 9 N -0.912 5.912 10 Si 0.907 3.093 11 H -0.291 1.291 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.181 3.819 15 H 0.121 0.879 16 C 0.019 3.981 17 O -0.380 6.380 18 C 0.087 3.913 19 C -0.155 4.155 20 C -0.134 4.134 21 C -0.131 4.131 22 H 0.050 0.950 23 H 0.045 0.955 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.038 0.962 31 H 0.250 0.750 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 -6.318 -4.088 7.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.180 4.180 4 C 0.019 3.981 5 N -0.320 5.320 6 C -0.364 4.364 7 H 0.091 0.909 8 C -0.203 4.203 9 N -0.560 5.560 10 Si 0.738 3.262 11 H -0.219 1.219 12 H -0.217 1.217 13 H -0.208 1.208 14 C 0.075 3.925 15 H 0.138 0.862 16 C -0.058 4.058 17 O -0.300 6.300 18 C 0.047 3.953 19 C -0.213 4.213 20 C -0.191 4.191 21 C -0.171 4.171 22 H 0.070 0.930 23 H 0.064 0.936 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.186 -6.076 -4.290 7.532 hybrid contribution 0.356 0.330 1.055 1.161 sum -0.830 -5.747 -3.236 6.647 Atomic orbital electron populations 1.21766 0.96705 1.00574 1.01637 1.21510 0.95139 0.98357 1.01102 1.22305 0.99318 0.94459 1.01946 1.20853 0.91532 0.86928 0.98755 1.44017 1.75112 1.09598 1.03224 1.19316 1.39820 0.90163 0.87123 0.90886 1.24867 1.02271 0.96205 0.96914 1.69907 1.54858 1.07701 1.23529 0.86186 0.77539 0.79103 0.83380 1.21878 1.21697 1.20833 1.22407 0.93521 0.95229 0.81327 0.86189 1.24232 0.96148 0.97441 0.87960 1.88755 1.22503 1.84103 1.34596 1.22246 0.82854 0.93381 0.96801 1.22205 0.99619 0.98784 1.00672 1.21800 1.00499 0.97614 0.99173 1.23596 1.00560 1.03505 0.89439 0.93045 0.93593 0.92972 0.92609 0.92758 0.92772 0.92095 0.93729 0.94358 0.93883 0.93264 0.90662 0.93309 0.92374 0.92928 0.91788 0.92198 0.93508 0.88820 0.93163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.54 16 2 C -0.12 -1.76 5.93 -26.73 -0.16 -1.92 16 3 C -0.14 -2.50 5.43 -26.73 -0.15 -2.64 16 4 C 0.15 2.91 5.07 -4.04 -0.02 2.89 16 5 N -0.60 -14.27 2.62 -163.38 -0.43 -14.70 16 6 C -0.23 -6.16 9.61 -15.06 -0.14 -6.31 16 7 H 0.07 1.89 7.77 -52.49 -0.41 1.48 16 8 C -0.01 -0.19 5.38 -17.43 -0.09 -0.28 16 9 N -0.91 -24.70 7.70 55.49 0.43 -24.28 16 10 Si 0.91 21.44 29.56 -169.99 -5.03 16.41 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 14 C 0.18 4.26 2.87 -65.92 -0.19 4.07 16 15 H 0.12 3.27 5.91 -51.93 -0.31 2.96 16 16 C 0.02 0.39 5.87 38.21 0.22 0.62 16 17 O -0.38 -8.01 10.86 -35.23 -0.38 -8.39 16 18 C 0.09 1.70 1.19 -90.04 -0.11 1.59 16 19 C -0.16 -2.64 8.62 37.16 0.32 -2.32 16 20 C -0.13 -2.33 8.67 37.16 0.32 -2.00 16 21 C -0.13 -2.96 5.17 -25.20 -0.13 -3.09 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 1.00 6.64 -51.93 -0.34 0.65 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.88 7.95 -51.93 -0.41 0.47 16 30 H 0.04 0.73 5.74 -51.93 -0.30 0.43 16 31 H 0.25 6.69 8.32 -40.82 -0.34 6.35 16 32 H 0.05 0.98 5.53 -51.93 -0.29 0.69 16 33 H 0.08 1.50 7.32 -51.93 -0.38 1.11 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.05 0.91 8.04 -51.93 -0.42 0.49 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 2.30 6.10 -51.93 -0.32 1.98 16 41 H 0.05 1.18 7.61 -51.93 -0.40 0.79 16 LS Contribution 312.27 15.07 4.71 4.71 Total: -1.00 -26.91 312.27 -7.81 -34.72 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.35 Total: 2.45 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 0.25 Total: -10.93 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.00 Total: -38.98 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -0.38 Total: -8.39 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -26.91 -7.81 -34.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172288973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.566 kcal (2) G-P(sol) polarization free energy of solvation -26.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds