Wall clock time and date at job start Sun Mar 29 2020 22:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.53004 * 109.46960 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47069 * 180.02562 * 4 3 2 6 6 C 1.36936 * 119.99971 * 95.53387 * 5 4 3 7 7 H 1.07994 * 120.00028 * 12.24521 * 6 5 4 8 8 C 1.38818 * 119.99545 * 192.24164 * 6 5 4 9 9 N 1.31618 * 120.00138 * 353.37753 * 8 6 5 10 10 Si 1.86795 * 119.99650 * 173.37490 * 8 6 5 11 11 H 1.48500 * 109.47392 * 90.00179 * 10 8 6 12 12 H 1.48496 * 109.47256 * 210.00030 * 10 8 6 13 13 H 1.48503 * 109.47298 * 329.99830 * 10 8 6 14 14 C 1.46500 * 119.99687 * 275.53407 * 5 4 3 15 15 H 1.08999 * 110.80144 * 127.53965 * 14 5 4 16 16 C 1.55001 * 110.90688 * 3.91170 * 14 5 4 17 17 O 1.44382 * 103.48775 * 204.77583 * 16 14 5 18 18 C 1.43741 * 106.97634 * 40.06298 * 17 16 14 19 19 C 1.53005 * 109.88078 * 92.90753 * 18 17 16 20 20 C 1.52997 * 109.87932 * 214.06318 * 18 17 16 21 21 C 1.54104 * 107.29427 * 333.48491 * 18 17 16 22 22 H 1.09002 * 109.47117 * 59.99927 * 1 2 3 23 23 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47173 * 299.99699 * 1 2 3 25 25 H 1.09002 * 109.47117 * 120.00073 * 2 1 3 26 26 H 1.08998 * 109.47398 * 239.99846 * 2 1 3 27 27 H 1.09002 * 109.47265 * 299.99982 * 3 2 1 28 28 H 1.09002 * 109.46931 * 60.00153 * 3 2 1 29 29 H 1.09002 * 109.47117 * 300.00073 * 4 3 2 30 30 H 1.08995 * 109.46936 * 59.99695 * 4 3 2 31 31 H 0.97001 * 119.99789 * 184.95900 * 9 8 6 32 32 H 1.08995 * 110.62187 * 323.27849 * 16 14 5 33 33 H 1.08997 * 110.61415 * 86.12121 * 16 14 5 34 34 H 1.08997 * 109.46869 * 64.80472 * 19 18 17 35 35 H 1.08997 * 109.47084 * 184.80928 * 19 18 17 36 36 H 1.09001 * 109.46549 * 304.80726 * 19 18 17 37 37 H 1.08996 * 109.47687 * 58.54534 * 20 18 17 38 38 H 1.09004 * 109.47588 * 178.54629 * 20 18 17 39 39 H 1.08997 * 109.46983 * 298.54267 * 20 18 17 40 40 H 1.09005 * 110.48911 * 243.35491 * 21 18 17 41 41 H 1.08998 * 110.48834 * 120.70499 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8238 0.0013 6 6 4.3939 3.4308 1.1820 7 1 4.4899 2.8433 2.0830 8 6 4.6107 4.8014 1.2205 9 7 4.6226 5.4975 0.1036 10 14 4.8856 5.6577 2.8578 11 1 6.3368 5.6700 3.1726 12 1 4.3849 7.0533 2.7766 13 1 4.1535 4.9306 3.9258 14 6 4.1877 3.5555 -1.2613 15 1 3.6709 4.5137 -1.2081 16 6 3.6614 2.7084 -2.4479 17 8 4.3703 3.2452 -3.5854 18 6 5.7185 3.5009 -3.1573 19 6 6.6000 2.2880 -3.4617 20 6 6.2656 4.7379 -3.8723 21 6 5.6768 3.7501 -1.6371 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8899 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 3.9330 0.9288 0.8909 30 1 3.9337 0.9285 -0.8890 31 1 4.8451 6.4415 0.1228 32 1 3.9050 1.6555 -2.3058 33 1 2.5859 2.8398 -2.5660 34 1 6.6627 2.1460 -4.5405 35 1 7.5989 2.4545 -3.0584 36 1 6.1663 1.3994 -3.0028 37 1 5.6281 5.5949 -3.6551 38 1 7.2783 4.9409 -3.5239 39 1 6.2803 4.5593 -4.9474 40 1 5.9984 4.7661 -1.4080 41 1 6.3001 3.0246 -1.1144 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172288973.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:46 Heat of formation + Delta-G solvation = -44.900363 kcal Electronic energy + Delta-G solvation = -18970.441598 eV Core-core repulsion = 16271.387747 eV Total energy + Delta-G solvation = -2699.053852 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.75128 -37.75711 -35.56780 -33.90049 -33.04868 -31.03026 -29.23225 -28.21546 -26.52655 -25.68432 -23.84540 -21.93033 -21.16307 -20.50319 -18.80340 -17.05460 -16.91157 -16.53324 -15.88760 -15.62368 -15.29171 -14.82579 -14.67658 -14.19071 -14.02352 -13.61433 -13.51459 -13.24914 -13.06151 -12.85812 -12.83808 -12.68131 -12.47249 -12.28018 -12.11229 -11.93029 -11.81456 -11.66736 -11.54297 -11.37129 -11.22195 -11.13226 -10.35459 -10.32490 -8.79112 -7.58868 -5.13981 1.47198 1.49914 1.56681 2.53020 3.02785 3.37918 3.71403 4.06501 4.14021 4.15710 4.24765 4.28517 4.36393 4.42806 4.53573 4.56958 4.68024 4.77589 4.86752 4.88908 4.97162 4.99004 5.03324 5.05866 5.09950 5.14478 5.20683 5.21267 5.35876 5.42121 5.49852 5.52281 5.60172 5.65468 5.94735 6.05267 6.25701 6.44081 7.28244 7.97802 8.35851 9.27525 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.012995 B = 0.012265 C = 0.006920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.205909 B = 2282.350792 C = 4045.421010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.117 4.117 3 C -0.129 4.129 4 C 0.143 3.857 5 N -0.610 5.610 6 C -0.244 4.244 7 H 0.072 0.928 8 C -0.054 4.054 9 N -0.926 5.926 10 Si 0.962 3.038 11 H -0.291 1.291 12 H -0.298 1.298 13 H -0.277 1.277 14 C 0.179 3.821 15 H 0.080 0.920 16 C 0.033 3.967 17 O -0.389 6.389 18 C 0.083 3.917 19 C -0.149 4.149 20 C -0.130 4.130 21 C -0.122 4.122 22 H 0.050 0.950 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.045 0.955 30 H 0.052 0.948 31 H 0.242 0.758 32 H 0.063 0.937 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.047 0.953 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.033 -7.914 -4.763 9.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.169 4.169 4 C 0.018 3.982 5 N -0.333 5.333 6 C -0.374 4.374 7 H 0.090 0.910 8 C -0.248 4.248 9 N -0.575 5.575 10 Si 0.792 3.208 11 H -0.219 1.219 12 H -0.225 1.225 13 H -0.202 1.202 14 C 0.072 3.928 15 H 0.098 0.902 16 C -0.044 4.044 17 O -0.309 6.309 18 C 0.044 3.956 19 C -0.206 4.206 20 C -0.187 4.187 21 C -0.162 4.162 22 H 0.069 0.931 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.081 0.919 26 H 0.085 0.915 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.052 0.948 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -1.145 -7.702 -4.966 9.236 hybrid contribution 0.334 0.814 1.278 1.552 sum -0.811 -6.888 -3.688 7.855 Atomic orbital electron populations 1.21745 0.95352 1.01976 1.01430 1.21457 0.96301 0.95633 1.02079 1.22128 0.97582 0.96804 1.00408 1.21026 0.92802 0.85019 0.99349 1.44202 1.75455 1.10963 1.02704 1.19544 1.39335 0.90476 0.88049 0.90979 1.25489 1.03038 0.96909 0.99331 1.70166 1.55506 1.07186 1.24617 0.85324 0.77166 0.77648 0.80650 1.21867 1.22476 1.20210 1.22091 0.93904 0.94318 0.82444 0.90230 1.24076 0.96388 0.97445 0.86505 1.88743 1.23313 1.84310 1.34498 1.22368 0.82869 0.95679 0.94667 1.22130 0.99392 0.96975 1.02101 1.21778 1.00703 0.95875 1.00367 1.23364 0.99557 1.01377 0.91932 0.93084 0.91376 0.93441 0.91928 0.91463 0.93588 0.94364 0.93687 0.93007 0.94763 0.91906 0.90103 0.91234 0.91205 0.93353 0.93622 0.90785 0.91299 0.91406 0.94604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.70 16 2 C -0.12 -3.08 5.93 30.60 0.18 -2.90 16 3 C -0.13 -4.50 5.43 30.60 0.17 -4.34 16 4 C 0.14 5.61 5.07 86.38 0.44 6.04 16 5 N -0.61 -29.43 2.62 -670.82 -1.76 -31.19 16 6 C -0.24 -12.97 9.61 84.04 0.81 -12.17 16 7 H 0.07 3.76 7.77 -2.91 -0.02 3.74 16 8 C -0.05 -2.93 5.38 84.86 0.46 -2.48 16 9 N -0.93 -51.79 7.70 21.65 0.17 -51.62 16 10 Si 0.96 44.82 29.56 68.60 2.03 46.84 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 14 C 0.18 8.53 2.87 46.29 0.13 8.67 16 15 H 0.08 4.50 5.91 -2.39 -0.01 4.49 16 16 C 0.03 1.32 5.87 72.67 0.43 1.75 16 17 O -0.39 -15.87 10.86 -148.98 -1.62 -17.49 16 18 C 0.08 3.16 1.19 -10.42 -0.01 3.15 16 19 C -0.15 -4.66 8.62 71.98 0.62 -4.04 16 20 C -0.13 -4.35 8.67 71.98 0.62 -3.73 16 21 C -0.12 -5.58 5.17 31.59 0.16 -5.42 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.66 6.64 -2.39 -0.02 1.64 16 28 H 0.04 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.74 7.95 -2.39 -0.02 1.72 16 30 H 0.05 1.88 5.74 -2.39 -0.01 1.87 16 31 H 0.24 13.41 8.32 -92.71 -0.77 12.64 16 32 H 0.06 2.38 5.53 -2.39 -0.01 2.36 16 33 H 0.08 3.15 7.32 -2.39 -0.02 3.14 16 34 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 1.54 8.04 -2.39 -0.02 1.52 16 37 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.07 3.43 6.10 -2.38 -0.01 3.41 16 41 H 0.04 1.69 7.61 -2.39 -0.02 1.67 16 Total: -1.00 -58.02 312.27 4.51 -53.51 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.97 Total: 18.11 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: 4.72 Total: -18.16 kcal Atomic # 7 Polarization: -81.22 SS G_CDS: -1.59 Total: -82.81 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.62 Total: -17.49 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -58.02 4.51 -53.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172288973.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.612 kcal (2) G-P(sol) polarization free energy of solvation -58.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds