Wall clock time and date at job start Sun Mar 29 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53007 * 113.00062 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.46898 * 110.99887 * 179.97438 * 5 4 3 7 7 H 1.08990 * 109.47176 * 34.99919 * 6 5 4 8 8 C 1.53006 * 109.47040 * 274.99909 * 6 5 4 9 9 C 1.52996 * 109.47170 * 155.00295 * 6 5 4 10 10 C 1.52998 * 109.46929 * 295.00028 * 9 6 5 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.54033 * 113.81274 * 311.82501 * 3 2 1 20 20 O 1.44442 * 85.42372 * 91.81105 * 19 3 2 21 21 C 1.44171 * 93.38299 * 24.08686 * 20 19 3 22 22 H 1.08997 * 109.47587 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46933 * 300.00229 * 1 2 3 24 24 H 1.09004 * 109.47081 * 59.99861 * 1 2 3 25 25 H 1.08997 * 109.47122 * 239.99125 * 2 1 3 26 26 H 1.09004 * 109.47081 * 120.00139 * 2 1 3 27 27 H 1.09001 * 109.47160 * 59.99551 * 4 3 2 28 28 H 1.08999 * 109.46745 * 299.99320 * 4 3 2 29 29 H 1.00897 * 111.00124 * 303.95446 * 5 4 3 30 30 H 1.09002 * 109.46582 * 60.00285 * 8 6 5 31 31 H 1.08995 * 109.46978 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.46949 * 300.00320 * 8 6 5 33 33 H 1.09000 * 109.47441 * 175.00118 * 9 6 5 34 34 H 1.09002 * 109.47087 * 54.99564 * 9 6 5 35 35 H 1.09001 * 109.47671 * 60.00109 * 10 9 6 36 36 H 1.08998 * 109.47454 * 300.00107 * 10 9 6 37 37 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 38 38 H 1.09002 * 113.86077 * 205.91853 * 19 3 2 39 39 H 1.09001 * 113.86808 * 337.61979 * 19 3 2 40 40 H 1.09000 * 113.86548 * 221.76823 * 21 20 19 41 41 H 1.09006 * 113.86515 * 90.06182 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5672 1.5365 -0.0006 5 7 3.9708 2.9490 -0.0012 6 6 5.4340 3.0784 -0.0012 7 1 5.8701 2.2717 -0.5902 8 6 5.9531 2.9987 1.4359 9 6 5.8269 4.4253 -0.6113 10 6 5.4178 4.4563 -2.0853 11 6 5.8042 5.7833 -2.6862 12 1 6.2923 6.5299 -2.0774 13 6 5.5392 6.0421 -4.0142 14 7 5.8769 7.1998 -4.5387 15 14 4.7019 4.7475 -5.0689 16 1 3.2295 4.9271 -4.9972 17 1 5.1499 4.8910 -6.4775 18 1 5.0605 3.3953 -4.5708 19 6 1.3614 2.3421 -1.0501 20 8 0.4266 2.6674 0.0018 21 6 1.3614 2.3421 1.0500 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9611 1.0461 -0.8908 28 1 3.9618 1.0460 0.8892 29 1 3.5639 3.4410 -0.7825 30 1 5.6732 2.0391 1.8705 31 1 7.0388 3.0952 1.4359 32 1 5.5169 3.8055 2.0250 33 1 6.9056 4.5600 -0.5307 34 1 5.3195 5.2283 -0.0765 35 1 4.3392 4.3217 -2.1659 36 1 5.9251 3.6534 -2.6201 37 1 5.6908 7.3817 -5.4731 38 1 1.9743 3.1842 -1.3715 39 1 0.9186 1.7931 -1.8812 40 1 0.9186 1.7932 1.8811 41 1 1.9743 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:38 Heat of formation + Delta-G solvation = -30.827085 kcal Electronic energy + Delta-G solvation = -18280.670186 eV Core-core repulsion = 15582.226598 eV Total energy + Delta-G solvation = -2698.443588 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.93846 -37.19427 -33.96190 -33.06602 -31.68779 -29.83650 -27.96890 -26.53442 -25.49376 -24.55876 -22.83628 -21.09699 -19.68571 -18.48741 -17.01533 -16.34809 -16.16131 -15.76105 -15.16382 -14.64011 -14.43524 -14.11604 -13.41162 -13.03324 -12.87405 -12.84121 -12.51328 -12.12820 -12.12059 -11.90164 -11.73980 -11.50868 -11.43276 -11.17549 -10.91215 -10.65495 -10.31771 -10.21382 -9.97688 -9.80162 -9.51118 -9.37204 -9.21076 -8.57350 -8.16807 -6.07012 -4.05086 3.26315 3.34274 3.35530 3.79988 4.13070 4.29549 4.41286 4.74130 4.93937 5.15701 5.16905 5.26002 5.34015 5.45601 5.47880 5.51216 5.61031 5.64328 5.71541 5.73223 5.78313 5.82973 6.01741 6.03843 6.13825 6.19012 6.23119 6.23499 6.30305 6.37164 6.39319 6.69525 6.81042 7.22456 7.23591 7.46001 7.66223 7.76317 8.51513 8.98506 9.55314 11.06585 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.006660 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.823878 B = 4203.040720 C = 4970.613599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.098 4.098 3 C -0.129 4.129 4 C 0.065 3.935 5 N -0.688 5.688 6 C 0.080 3.920 7 H 0.038 0.962 8 C -0.135 4.135 9 C -0.107 4.107 10 C -0.014 4.014 11 C -0.519 4.519 12 H 0.072 0.928 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.268 1.268 19 C 0.040 3.960 20 O -0.380 6.380 21 C 0.051 3.949 22 H 0.048 0.952 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.074 0.926 29 H 0.348 0.652 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.006 0.994 36 H 0.012 0.988 37 H 0.263 0.737 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.297 -14.890 10.336 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.130 4.130 4 C -0.064 4.064 5 N -0.325 5.325 6 C -0.029 4.029 7 H 0.056 0.944 8 C -0.193 4.193 9 C -0.145 4.145 10 C -0.051 4.051 11 C -0.557 4.557 12 H 0.090 0.910 13 C -0.134 4.134 14 N -0.541 5.541 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.037 4.037 20 O -0.299 6.299 21 C -0.025 4.025 22 H 0.067 0.933 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.171 0.829 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.024 0.976 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.615 -14.611 10.837 19.721 hybrid contribution 0.018 -0.900 -1.687 1.912 sum -7.598 -15.511 9.150 19.546 Atomic orbital electron populations 1.21787 0.94990 1.00692 1.03018 1.21224 0.96482 0.93601 1.02247 1.23735 0.95651 0.96579 0.97015 1.21851 0.93348 0.90573 1.00654 1.60673 1.09806 1.10996 1.50979 1.21644 0.86757 0.98656 0.95847 0.94395 1.21773 0.99860 1.01182 0.96516 1.21668 1.00909 0.94345 0.97542 1.19604 0.95315 0.97886 0.92338 1.21117 1.39348 0.99534 0.95694 0.90956 1.25034 0.95289 0.95183 0.97912 1.69909 1.47885 1.22568 1.13764 0.86820 0.80169 0.82741 0.79798 1.20160 1.21328 1.19252 1.24098 0.90306 0.97155 0.92143 1.89669 1.32764 1.90556 1.16867 1.24035 0.89444 0.97560 0.91481 0.93328 0.92216 0.92238 0.91569 0.91440 0.95012 0.90781 0.82896 0.93753 0.92867 0.92205 0.92002 0.91817 0.97551 0.96982 0.92718 0.89767 0.89625 0.90222 0.88335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 8.63 37.16 0.32 -1.12 16 2 C -0.10 -0.95 5.65 -26.73 -0.15 -1.10 16 3 C -0.13 -1.50 1.38 -153.43 -0.21 -1.72 16 4 C 0.07 0.82 5.18 -3.82 -0.02 0.80 16 5 N -0.69 -10.23 5.18 -106.73 -0.55 -10.78 16 6 C 0.08 1.26 2.65 -67.71 -0.18 1.08 16 7 H 0.04 0.61 7.80 -51.93 -0.41 0.21 16 8 C -0.14 -1.81 9.42 37.16 0.35 -1.46 16 9 C -0.11 -2.06 4.74 -26.73 -0.13 -2.19 16 10 C -0.01 -0.33 3.87 -27.88 -0.11 -0.43 16 11 C -0.52 -14.71 9.66 -34.44 -0.33 -15.05 16 12 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 14 N -0.90 -27.87 13.96 55.43 0.77 -27.09 16 15 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 18 H -0.27 -6.31 6.53 56.52 0.37 -5.94 16 19 C 0.04 0.54 7.59 37.64 0.29 0.82 16 20 O -0.38 -5.47 10.87 -35.23 -0.38 -5.85 16 21 C 0.05 0.63 7.59 37.64 0.29 0.91 16 22 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 23 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 24 H 0.06 0.64 6.53 -51.93 -0.34 0.30 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 28 H 0.07 0.86 7.44 -51.93 -0.39 0.47 16 29 H 0.35 5.75 4.18 -39.29 -0.16 5.58 16 30 H 0.04 0.53 7.45 -51.93 -0.39 0.14 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 35 H 0.01 0.15 5.87 -51.93 -0.30 -0.16 16 36 H 0.01 0.28 7.18 -51.93 -0.37 -0.09 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.08 1.24 5.97 -51.93 -0.31 0.93 16 39 H 0.09 1.04 7.33 -51.93 -0.38 0.66 16 40 H 0.08 0.84 7.33 -51.93 -0.38 0.46 16 41 H 0.10 1.30 7.29 -51.93 -0.38 0.92 16 LS Contribution 312.29 15.07 4.71 4.71 Total: -1.00 -29.93 312.29 -7.22 -37.16 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.11 Total: 2.54 kcal Atomic # 6 Polarization: -17.61 SS G_CDS: 0.01 Total: -17.59 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.22 Total: -37.88 kcal Atomic # 8 Polarization: -5.47 SS G_CDS: -0.38 Total: -5.85 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.93 -7.22 -37.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.329 kcal (2) G-P(sol) polarization free energy of solvation -29.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds