Wall clock time and date at job start Sun Mar 29 2020 22:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47470 * 2 1 4 4 C 1.53007 * 113.00062 * 180.02562 * 3 2 1 5 5 N 1.46899 * 109.47108 * 179.97438 * 4 3 2 6 6 C 1.46898 * 110.99887 * 179.97438 * 5 4 3 7 7 H 1.08990 * 109.47176 * 34.99919 * 6 5 4 8 8 C 1.53006 * 109.47040 * 274.99909 * 6 5 4 9 9 C 1.52996 * 109.47170 * 155.00295 * 6 5 4 10 10 C 1.52998 * 109.46929 * 295.00028 * 9 6 5 11 11 C 1.50706 * 109.47348 * 179.97438 * 10 9 6 12 12 H 1.08000 * 119.99302 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00436 * 179.72505 * 11 10 9 14 14 N 1.31514 * 120.00481 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99745 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47209 * 90.00365 * 15 13 11 17 17 H 1.48506 * 109.47294 * 210.00213 * 15 13 11 18 18 H 1.48501 * 109.47275 * 330.00116 * 15 13 11 19 19 C 1.54033 * 113.81274 * 311.82501 * 3 2 1 20 20 O 1.44442 * 85.42372 * 91.81105 * 19 3 2 21 21 C 1.44171 * 93.38299 * 24.08686 * 20 19 3 22 22 H 1.08997 * 109.47587 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46933 * 300.00229 * 1 2 3 24 24 H 1.09004 * 109.47081 * 59.99861 * 1 2 3 25 25 H 1.08997 * 109.47122 * 239.99125 * 2 1 3 26 26 H 1.09004 * 109.47081 * 120.00139 * 2 1 3 27 27 H 1.09001 * 109.47160 * 59.99551 * 4 3 2 28 28 H 1.08999 * 109.46745 * 299.99320 * 4 3 2 29 29 H 1.00897 * 111.00124 * 303.95446 * 5 4 3 30 30 H 1.09002 * 109.46582 * 60.00285 * 8 6 5 31 31 H 1.08995 * 109.46978 * 180.02562 * 8 6 5 32 32 H 1.08998 * 109.46949 * 300.00320 * 8 6 5 33 33 H 1.09000 * 109.47441 * 175.00118 * 9 6 5 34 34 H 1.09002 * 109.47087 * 54.99564 * 9 6 5 35 35 H 1.09001 * 109.47671 * 60.00109 * 10 9 6 36 36 H 1.08998 * 109.47454 * 300.00107 * 10 9 6 37 37 H 0.96995 * 120.00207 * 179.97438 * 14 13 11 38 38 H 1.09002 * 113.86077 * 205.91853 * 19 3 2 39 39 H 1.09001 * 113.86808 * 337.61979 * 19 3 2 40 40 H 1.09000 * 113.86548 * 221.76823 * 21 20 19 41 41 H 1.09006 * 113.86515 * 90.06182 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5672 1.5365 -0.0006 5 7 3.9708 2.9490 -0.0012 6 6 5.4340 3.0784 -0.0012 7 1 5.8701 2.2717 -0.5902 8 6 5.9531 2.9987 1.4359 9 6 5.8269 4.4253 -0.6113 10 6 5.4178 4.4563 -2.0853 11 6 5.8042 5.7833 -2.6862 12 1 6.2923 6.5299 -2.0774 13 6 5.5392 6.0421 -4.0142 14 7 5.8769 7.1998 -4.5387 15 14 4.7019 4.7475 -5.0689 16 1 3.2295 4.9271 -4.9972 17 1 5.1499 4.8910 -6.4775 18 1 5.0605 3.3953 -4.5708 19 6 1.3614 2.3421 -1.0501 20 8 0.4266 2.6674 0.0018 21 6 1.3614 2.3421 1.0500 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9611 1.0461 -0.8908 28 1 3.9618 1.0460 0.8892 29 1 3.5639 3.4410 -0.7825 30 1 5.6732 2.0391 1.8705 31 1 7.0388 3.0952 1.4359 32 1 5.5169 3.8055 2.0250 33 1 6.9056 4.5600 -0.5307 34 1 5.3195 5.2283 -0.0765 35 1 4.3392 4.3217 -2.1659 36 1 5.9251 3.6534 -2.6201 37 1 5.6908 7.3817 -5.4731 38 1 1.9743 3.1842 -1.3715 39 1 0.9186 1.7931 -1.8812 40 1 0.9186 1.7932 1.8811 41 1 1.9743 3.1844 1.3714 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482616.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:38 Heat of formation + Delta-G solvation = -50.165104 kcal Electronic energy + Delta-G solvation = -18281.508746 eV Core-core repulsion = 15582.226598 eV Total energy + Delta-G solvation = -2699.282148 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.91968 -38.49642 -35.40222 -34.57758 -33.11758 -31.36645 -28.96285 -27.53564 -27.18542 -25.64281 -23.79917 -22.77824 -21.11242 -19.41082 -19.01086 -17.51157 -17.19442 -16.85368 -16.44232 -16.32064 -15.53532 -15.32097 -14.98114 -14.47508 -14.33927 -13.88304 -13.82402 -13.36650 -13.23627 -13.05761 -12.92132 -12.82124 -12.69766 -12.42387 -12.09779 -11.95190 -11.80712 -11.56356 -11.44021 -11.21154 -11.18592 -11.05161 -10.78547 -10.39824 -9.31558 -8.31601 -6.35686 1.31942 1.33680 1.44576 2.32668 2.83276 3.03237 3.17073 3.23557 3.85012 3.97186 4.05084 4.23484 4.31115 4.40058 4.43813 4.54179 4.58749 4.65731 4.73085 4.74418 4.77194 4.80738 4.89212 4.99358 5.02285 5.07183 5.13472 5.20525 5.26356 5.28371 5.35340 5.42520 5.49369 5.50603 5.54671 5.64750 6.21088 6.26863 6.40814 6.72671 7.28814 8.85497 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.022167 B = 0.006660 C = 0.005632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.823878 B = 4203.040720 C = 4970.613599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.094 4.094 3 C -0.115 4.115 4 C 0.067 3.933 5 N -0.692 5.692 6 C 0.088 3.912 7 H 0.041 0.959 8 C -0.129 4.129 9 C -0.100 4.100 10 C -0.008 4.008 11 C -0.532 4.532 12 H 0.030 0.970 13 C 0.004 3.996 14 N -0.952 5.952 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.246 1.246 19 C 0.030 3.970 20 O -0.399 6.399 21 C 0.050 3.950 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.045 0.955 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.032 0.968 28 H 0.091 0.909 29 H 0.337 0.663 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.050 0.950 35 H 0.016 0.984 36 H 0.015 0.985 37 H 0.266 0.734 38 H 0.066 0.934 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 -17.998 10.950 22.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.131 4.131 3 C -0.116 4.116 4 C -0.062 4.062 5 N -0.327 5.327 6 C -0.021 4.021 7 H 0.059 0.941 8 C -0.186 4.186 9 C -0.138 4.138 10 C -0.045 4.045 11 C -0.570 4.570 12 H 0.048 0.952 13 C -0.192 4.192 14 N -0.592 5.592 15 Si 0.772 3.228 16 H -0.190 1.190 17 H -0.210 1.210 18 H -0.170 1.170 19 C -0.047 4.047 20 O -0.318 6.318 21 C -0.027 4.027 22 H 0.082 0.918 23 H 0.071 0.929 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.050 0.950 28 H 0.109 0.891 29 H 0.158 0.842 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.033 0.967 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.117 0.883 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.409 -17.735 11.482 22.739 hybrid contribution 0.290 0.170 -1.828 1.859 sum -8.119 -17.565 9.654 21.625 Atomic orbital electron populations 1.21754 0.95086 1.01392 1.02021 1.21243 0.96296 0.92139 1.03464 1.23660 0.94897 0.97476 0.95541 1.21922 0.93896 0.89013 1.01396 1.60732 1.08987 1.12602 1.50370 1.21534 0.87495 0.95970 0.97137 0.94141 1.21707 1.00165 1.02143 0.94633 1.21545 1.00409 0.96594 0.95254 1.19523 0.95780 0.94778 0.94462 1.21495 1.38742 1.00986 0.95760 0.95167 1.26027 0.96102 0.97585 0.99532 1.70070 1.49700 1.25072 1.14392 0.85686 0.79260 0.80366 0.77528 1.18983 1.21013 1.16994 1.24158 0.90477 0.97220 0.92832 1.89653 1.33616 1.90800 1.17778 1.24098 0.89207 0.97490 0.91864 0.91766 0.92853 0.93608 0.90840 0.89690 0.95001 0.89106 0.84170 0.91685 0.92213 0.92696 0.92547 0.93089 0.96541 0.96714 0.92518 0.91561 0.88654 0.88313 0.89623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.63 71.98 0.62 -1.83 16 2 C -0.09 -1.50 5.65 30.59 0.17 -1.33 16 3 C -0.12 -2.39 1.38 -51.48 -0.07 -2.46 16 4 C 0.07 1.48 5.18 86.31 0.45 1.92 16 5 N -0.69 -19.30 5.18 -491.57 -2.55 -21.85 16 6 C 0.09 2.60 2.65 44.92 0.12 2.72 16 7 H 0.04 1.19 7.80 -2.39 -0.02 1.17 16 8 C -0.13 -3.11 9.42 71.98 0.68 -2.43 16 9 C -0.10 -3.84 4.74 30.59 0.15 -3.70 16 10 C -0.01 -0.37 3.87 29.85 0.12 -0.25 16 11 C -0.53 -30.94 9.66 25.60 0.25 -30.69 16 12 H 0.03 1.94 7.99 -2.91 -0.02 1.92 16 13 C 0.00 0.25 5.47 84.65 0.46 0.71 16 14 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 15 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 16 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 17 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 18 H -0.25 -10.57 6.53 99.48 0.65 -9.92 16 19 C 0.03 0.77 7.59 72.29 0.55 1.31 16 20 O -0.40 -11.06 10.87 -148.98 -1.62 -12.68 16 21 C 0.05 1.12 7.59 72.29 0.55 1.67 16 22 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.05 0.96 6.53 -2.38 -0.02 0.95 16 24 H 0.04 0.89 6.53 -2.39 -0.02 0.88 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.03 0.73 8.06 -2.39 -0.02 0.71 16 28 H 0.09 1.73 7.44 -2.39 -0.02 1.72 16 29 H 0.34 10.75 4.18 -89.70 -0.37 10.37 16 30 H 0.06 1.32 7.45 -2.39 -0.02 1.30 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.02 0.73 5.87 -2.39 -0.01 0.72 16 36 H 0.01 0.67 7.18 -2.39 -0.02 0.65 16 37 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 38 H 0.07 1.92 5.97 -2.39 -0.01 1.90 16 39 H 0.10 2.18 7.33 -2.39 -0.02 2.16 16 40 H 0.10 1.83 7.33 -2.39 -0.02 1.81 16 41 H 0.09 2.16 7.29 -2.38 -0.02 2.14 16 Total: -1.00 -65.56 312.29 2.61 -62.95 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.56 Total: 19.88 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 4.04 Total: -34.35 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -2.25 Total: -81.94 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -1.62 Total: -12.68 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -65.56 2.61 -62.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482616.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.784 kcal (2) G-P(sol) polarization free energy of solvation -65.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds