Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52988 * 109.47374 * 2 1 4 4 C 1.53003 * 113.00156 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47387 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00134 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47408 * 325.00449 * 6 5 4 8 8 C 1.52999 * 109.46934 * 85.00590 * 6 5 4 9 9 C 1.53006 * 109.47346 * 205.00231 * 6 5 4 10 10 C 1.52999 * 109.46626 * 65.00011 * 9 6 5 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 6 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99480 * 15 13 11 17 17 H 1.48494 * 109.47288 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46879 * 299.99424 * 15 13 11 19 19 C 1.54043 * 113.81558 * 311.82364 * 3 2 1 20 20 O 1.44442 * 85.42316 * 91.80968 * 19 3 2 21 21 C 1.44179 * 93.38254 * 24.09108 * 20 19 3 22 22 H 1.08989 * 109.47041 * 60.00286 * 1 2 3 23 23 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47031 * 299.99917 * 1 2 3 25 25 H 1.09000 * 109.47125 * 239.99130 * 2 1 3 26 26 H 1.09003 * 109.46916 * 120.00263 * 2 1 3 27 27 H 1.09001 * 109.47010 * 59.99968 * 4 3 2 28 28 H 1.08991 * 109.47204 * 299.99966 * 4 3 2 29 29 H 1.00900 * 111.00495 * 303.95879 * 5 4 3 30 30 H 1.09001 * 109.47273 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.46911 * 299.99888 * 8 6 5 32 32 H 1.09009 * 109.47170 * 60.00036 * 8 6 5 33 33 H 1.08993 * 109.46955 * 185.00483 * 9 6 5 34 34 H 1.09000 * 109.47050 * 305.00312 * 9 6 5 35 35 H 1.08993 * 109.47839 * 299.99931 * 10 9 6 36 36 H 1.09000 * 109.47160 * 60.00369 * 10 9 6 37 37 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 38 38 H 1.08997 * 113.86238 * 205.91284 * 19 3 2 39 39 H 1.08997 * 113.86155 * 337.62570 * 19 3 2 40 40 H 1.08997 * 113.86357 * 221.76904 * 21 20 19 41 41 H 1.08997 * 113.86577 * 90.06003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5672 1.5365 0.0006 5 7 3.9707 2.9490 0.0000 6 6 5.4340 3.0784 0.0012 7 1 5.8696 2.2723 0.5915 8 6 5.9543 2.9972 -1.4354 9 6 5.8264 4.4261 0.6102 10 6 5.4159 4.4585 2.0838 11 6 5.8018 5.7861 2.6836 12 1 6.2904 6.5322 2.0746 13 6 5.5310 6.0482 4.0099 14 7 4.9355 5.1399 4.7514 15 14 6.0086 7.6941 4.7531 16 1 5.3167 8.7865 4.0229 17 1 5.6104 7.7256 6.1834 18 1 7.4780 7.8787 4.6438 19 6 1.3614 2.3421 -1.0502 20 8 0.4265 2.6674 0.0017 21 6 1.3614 2.3422 1.0500 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9618 1.0459 -0.8891 28 1 3.9610 1.0462 0.8908 29 1 3.5645 3.4408 -0.7818 30 1 7.0400 3.0937 -1.4346 31 1 5.6748 2.0372 -1.8693 32 1 5.5187 3.8034 -2.0257 33 1 6.9050 4.5606 0.5304 34 1 5.3195 5.2284 0.0741 35 1 4.3373 4.3240 2.1637 36 1 5.9228 3.6561 2.6199 37 1 4.7446 5.3243 5.6843 38 1 1.9743 3.1842 -1.3715 39 1 0.9186 1.7931 -1.8812 40 1 0.9186 1.7932 1.8811 41 1 1.9742 3.1843 1.3713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -32.268376 kcal Electronic energy + Delta-G solvation = -18164.180120 eV Core-core repulsion = 15465.674032 eV Total energy + Delta-G solvation = -2698.506087 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.81974 -37.03091 -33.83194 -33.03245 -31.51470 -29.32658 -27.69853 -26.42337 -25.14441 -24.51011 -22.77864 -21.26728 -19.84959 -18.37034 -16.34313 -16.09957 -16.05002 -15.65969 -14.92156 -14.47889 -14.41096 -14.05280 -13.31375 -12.99858 -12.77881 -12.52280 -12.36580 -12.15652 -11.92607 -11.86029 -11.54882 -11.28961 -11.18511 -11.03173 -10.78187 -10.46166 -10.36426 -10.21563 -9.98649 -9.62364 -9.30205 -9.18068 -8.90274 -8.22014 -7.89308 -5.87475 -3.88507 3.39594 3.43876 3.46356 3.91103 4.25285 4.39579 4.55255 4.83473 5.03517 5.23367 5.26883 5.33946 5.48053 5.49791 5.50847 5.56412 5.64374 5.69398 5.74998 5.76936 5.89019 5.97623 6.07282 6.14333 6.24499 6.28419 6.32118 6.32519 6.40678 6.53817 6.68290 6.88963 7.30724 7.48230 7.76295 7.85447 8.08509 8.23328 8.58686 9.20060 9.74128 11.23559 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.005642 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.863870 B = 4961.152409 C = 5644.613844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.128 4.128 4 C 0.068 3.932 5 N -0.672 5.672 6 C 0.085 3.915 7 H 0.072 0.928 8 C -0.180 4.180 9 C -0.099 4.099 10 C 0.031 3.969 11 C -0.519 4.519 12 H 0.050 0.950 13 C 0.057 3.943 14 N -0.895 5.895 15 Si 0.887 3.113 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.279 1.279 19 C 0.042 3.958 20 O -0.382 6.382 21 C 0.052 3.948 22 H 0.057 0.943 23 H 0.047 0.953 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.026 0.974 28 H 0.077 0.923 29 H 0.333 0.667 30 H 0.059 0.941 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.046 0.954 34 H 0.046 0.954 35 H 0.032 0.968 36 H 0.006 0.994 37 H 0.258 0.742 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.226 -10.231 -12.099 16.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.136 4.136 3 C -0.129 4.129 4 C -0.062 4.062 5 N -0.303 5.303 6 C -0.025 4.025 7 H 0.090 0.910 8 C -0.239 4.239 9 C -0.137 4.137 10 C -0.006 4.006 11 C -0.558 4.558 12 H 0.068 0.932 13 C -0.143 4.143 14 N -0.535 5.535 15 Si 0.715 3.285 16 H -0.204 1.204 17 H -0.214 1.214 18 H -0.204 1.204 19 C -0.035 4.035 20 O -0.301 6.301 21 C -0.025 4.025 22 H 0.076 0.924 23 H 0.066 0.934 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.087 0.913 27 H 0.044 0.956 28 H 0.095 0.905 29 H 0.153 0.847 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.050 0.950 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.615 -10.098 -11.226 16.110 hybrid contribution 0.737 0.577 -0.447 1.037 sum -4.879 -9.521 -11.673 15.834 Atomic orbital electron populations 1.21782 0.95073 1.00601 1.02998 1.21222 0.96420 0.93750 1.02178 1.23716 0.95660 0.96448 0.97040 1.21834 0.93369 0.90436 1.00527 1.60586 1.09547 1.10745 1.49468 1.21727 0.86410 1.00595 0.93758 0.90995 1.22535 1.02025 1.00528 0.98839 1.21633 0.98769 0.93123 1.00137 1.18982 0.97770 0.95719 0.88163 1.21313 1.38251 1.01008 0.95188 0.93206 1.24982 0.95470 0.96512 0.97367 1.69959 1.42418 1.33850 1.07260 0.86751 0.78800 0.84843 0.78113 1.20370 1.21398 1.20446 1.23999 0.90478 0.96817 0.92206 1.89660 1.32909 1.90578 1.16979 1.24144 0.89142 0.98029 0.91143 0.92437 0.93418 0.92054 0.91837 0.91277 0.95575 0.90451 0.84747 0.92233 0.93777 0.92848 0.93545 0.93519 0.94982 0.97538 0.93196 0.90344 0.90035 0.90089 0.87405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.63 37.16 0.32 -1.21 16 2 C -0.10 -1.02 5.65 -26.74 -0.15 -1.17 16 3 C -0.13 -1.57 1.38 -153.43 -0.21 -1.78 16 4 C 0.07 0.89 5.18 -3.82 -0.02 0.87 16 5 N -0.67 -10.29 4.57 -106.73 -0.49 -10.78 16 6 C 0.08 1.38 2.59 -67.71 -0.18 1.20 16 7 H 0.07 1.23 7.80 -51.93 -0.40 0.82 16 8 C -0.18 -2.37 9.16 37.16 0.34 -2.03 16 9 C -0.10 -2.01 4.83 -26.73 -0.13 -2.14 16 10 C 0.03 0.80 4.86 -27.88 -0.14 0.66 16 11 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 12 H 0.05 1.40 7.74 -52.49 -0.41 1.00 16 13 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 14 N -0.90 -27.36 13.29 55.43 0.74 -26.63 16 15 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C 0.04 0.51 7.59 37.65 0.29 0.80 16 20 O -0.38 -5.77 10.87 -35.23 -0.38 -6.15 16 21 C 0.05 0.77 7.59 37.64 0.29 1.05 16 22 H 0.06 0.61 6.53 -51.93 -0.34 0.27 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.06 0.71 6.53 -51.93 -0.34 0.37 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.03 0.31 7.44 -51.93 -0.39 -0.08 16 28 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 29 H 0.33 4.71 6.18 -39.29 -0.24 4.47 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.52 7.45 -51.93 -0.39 0.13 16 32 H 0.05 0.67 8.13 -51.92 -0.42 0.25 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.03 0.89 7.75 -51.93 -0.40 0.48 16 36 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.08 0.94 5.97 -51.93 -0.31 0.63 16 39 H 0.08 0.85 7.33 -51.93 -0.38 0.47 16 40 H 0.08 1.13 7.33 -51.93 -0.38 0.75 16 41 H 0.11 1.90 7.28 -51.93 -0.38 1.52 16 LS Contribution 318.43 15.07 4.80 4.80 Total: -1.00 -30.52 318.43 -7.65 -38.17 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -7.29 Total: 0.96 kcal Atomic # 6 Polarization: -17.46 SS G_CDS: 0.00 Total: -17.46 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.25 Total: -37.41 kcal Atomic # 8 Polarization: -5.77 SS G_CDS: -0.38 Total: -6.15 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.52 -7.65 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.901 kcal (2) G-P(sol) polarization free energy of solvation -30.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds