Wall clock time and date at job start Sun Mar 29 2020 22:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52988 * 109.47374 * 2 1 4 4 C 1.53003 * 113.00156 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47387 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00134 * 179.97438 * 5 4 3 7 7 H 1.08992 * 109.47408 * 325.00449 * 6 5 4 8 8 C 1.52999 * 109.46934 * 85.00590 * 6 5 4 9 9 C 1.53006 * 109.47346 * 205.00231 * 6 5 4 10 10 C 1.52999 * 109.46626 * 65.00011 * 9 6 5 11 11 C 1.50706 * 109.46957 * 180.02562 * 10 9 6 12 12 H 1.07999 * 119.99816 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00340 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99773 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00296 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47086 * 59.99480 * 15 13 11 17 17 H 1.48494 * 109.47288 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46879 * 299.99424 * 15 13 11 19 19 C 1.54043 * 113.81558 * 311.82364 * 3 2 1 20 20 O 1.44442 * 85.42316 * 91.80968 * 19 3 2 21 21 C 1.44179 * 93.38254 * 24.09108 * 20 19 3 22 22 H 1.08989 * 109.47041 * 60.00286 * 1 2 3 23 23 H 1.08998 * 109.47089 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47031 * 299.99917 * 1 2 3 25 25 H 1.09000 * 109.47125 * 239.99130 * 2 1 3 26 26 H 1.09003 * 109.46916 * 120.00263 * 2 1 3 27 27 H 1.09001 * 109.47010 * 59.99968 * 4 3 2 28 28 H 1.08991 * 109.47204 * 299.99966 * 4 3 2 29 29 H 1.00900 * 111.00495 * 303.95879 * 5 4 3 30 30 H 1.09001 * 109.47273 * 179.97438 * 8 6 5 31 31 H 1.09002 * 109.46911 * 299.99888 * 8 6 5 32 32 H 1.09009 * 109.47170 * 60.00036 * 8 6 5 33 33 H 1.08993 * 109.46955 * 185.00483 * 9 6 5 34 34 H 1.09000 * 109.47050 * 305.00312 * 9 6 5 35 35 H 1.08993 * 109.47839 * 299.99931 * 10 9 6 36 36 H 1.09000 * 109.47160 * 60.00369 * 10 9 6 37 37 H 0.97000 * 120.00540 * 180.02562 * 14 13 11 38 38 H 1.08997 * 113.86238 * 205.91284 * 19 3 2 39 39 H 1.08997 * 113.86155 * 337.62570 * 19 3 2 40 40 H 1.08997 * 113.86357 * 221.76904 * 21 20 19 41 41 H 1.08997 * 113.86577 * 90.06003 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5672 1.5365 0.0006 5 7 3.9707 2.9490 0.0000 6 6 5.4340 3.0784 0.0012 7 1 5.8696 2.2723 0.5915 8 6 5.9543 2.9972 -1.4354 9 6 5.8264 4.4261 0.6102 10 6 5.4159 4.4585 2.0838 11 6 5.8018 5.7861 2.6836 12 1 6.2904 6.5322 2.0746 13 6 5.5310 6.0482 4.0099 14 7 4.9355 5.1399 4.7514 15 14 6.0086 7.6941 4.7531 16 1 5.3167 8.7865 4.0229 17 1 5.6104 7.7256 6.1834 18 1 7.4780 7.8787 4.6438 19 6 1.3614 2.3421 -1.0502 20 8 0.4265 2.6674 0.0017 21 6 1.3614 2.3422 1.0500 22 1 -0.3633 0.5137 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5140 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 3.9618 1.0459 -0.8891 28 1 3.9610 1.0462 0.8908 29 1 3.5645 3.4408 -0.7818 30 1 7.0400 3.0937 -1.4346 31 1 5.6748 2.0372 -1.8693 32 1 5.5187 3.8034 -2.0257 33 1 6.9050 4.5606 0.5304 34 1 5.3195 5.2284 0.0741 35 1 4.3373 4.3240 2.1637 36 1 5.9228 3.6561 2.6199 37 1 4.7446 5.3243 5.6843 38 1 1.9743 3.1842 -1.3715 39 1 0.9186 1.7931 -1.8812 40 1 0.9186 1.7932 1.8811 41 1 1.9742 3.1843 1.3713 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172482617.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:40 Heat of formation + Delta-G solvation = -51.533637 kcal Electronic energy + Delta-G solvation = -18165.015524 eV Core-core repulsion = 15465.674032 eV Total energy + Delta-G solvation = -2699.341492 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.89540 -38.36535 -35.41408 -34.55317 -32.97366 -30.94191 -28.77978 -27.50044 -26.98993 -25.68339 -23.84785 -22.96691 -21.38121 -19.39129 -18.36862 -17.35166 -17.19562 -16.81908 -16.47310 -16.20870 -15.44373 -15.22416 -14.62622 -14.46735 -14.15749 -13.85620 -13.70508 -13.45084 -13.11991 -13.03184 -12.87172 -12.81815 -12.68859 -12.36513 -12.22188 -12.09109 -11.75129 -11.50224 -11.26707 -11.22940 -11.10719 -10.90771 -10.47157 -10.38323 -9.08442 -8.12711 -6.22804 1.39869 1.43047 1.50610 2.44285 2.85204 3.19029 3.20124 3.29829 3.88262 4.00064 4.12695 4.25701 4.34293 4.41189 4.47655 4.58134 4.59833 4.68144 4.71478 4.76395 4.79687 4.87912 4.99260 5.07268 5.08931 5.11237 5.21913 5.30077 5.31059 5.31488 5.36170 5.48841 5.50015 5.60459 5.90880 6.04862 6.28913 6.36265 6.62928 6.97023 7.45171 8.98227 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.024930 B = 0.005642 C = 0.004959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.863870 B = 4961.152409 C = 5644.613844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.114 4.114 4 C 0.073 3.927 5 N -0.692 5.692 6 C 0.092 3.908 7 H 0.061 0.939 8 C -0.168 4.168 9 C -0.089 4.089 10 C 0.040 3.960 11 C -0.544 4.544 12 H 0.054 0.946 13 C 0.000 4.000 14 N -0.932 5.932 15 Si 0.958 3.042 16 H -0.269 1.269 17 H -0.284 1.284 18 H -0.267 1.267 19 C 0.043 3.957 20 O -0.400 6.400 21 C 0.043 3.957 22 H 0.055 0.945 23 H 0.064 0.936 24 H 0.042 0.958 25 H 0.086 0.914 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.340 0.660 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.005 0.995 36 H -0.024 1.024 37 H 0.261 0.739 38 H 0.079 0.921 39 H 0.107 0.893 40 H 0.082 0.918 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.886 -10.538 -13.872 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.114 4.114 4 C -0.056 4.056 5 N -0.325 5.325 6 C -0.018 4.018 7 H 0.079 0.921 8 C -0.227 4.227 9 C -0.127 4.127 10 C 0.003 3.997 11 C -0.582 4.582 12 H 0.072 0.928 13 C -0.197 4.197 14 N -0.573 5.573 15 Si 0.783 3.217 16 H -0.194 1.194 17 H -0.209 1.209 18 H -0.192 1.192 19 C -0.034 4.034 20 O -0.320 6.320 21 C -0.033 4.033 22 H 0.074 0.926 23 H 0.083 0.917 24 H 0.061 0.939 25 H 0.104 0.896 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.161 0.839 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.125 0.875 40 H 0.100 0.900 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.271 -10.407 -13.023 17.483 hybrid contribution 0.595 0.671 0.128 0.906 sum -4.675 -9.735 -12.895 16.820 Atomic orbital electron populations 1.21746 0.95012 1.01402 1.02002 1.21245 0.96374 0.92255 1.03333 1.23634 0.94896 0.97374 0.95510 1.21793 0.93861 0.89067 1.00884 1.60446 1.09083 1.12559 1.50408 1.21489 0.87230 0.97404 0.95660 0.92093 1.22384 1.02168 1.02047 0.96107 1.21464 0.98765 0.95961 0.96498 1.18810 0.95598 0.93681 0.91632 1.21797 1.38338 1.02178 0.95868 0.92796 1.25918 0.95271 1.00572 0.97944 1.70105 1.43435 1.36108 1.07607 0.85608 0.78978 0.79888 0.77201 1.19422 1.20918 1.19216 1.24181 0.89960 0.96952 0.92266 1.89640 1.33691 1.90817 1.17815 1.23990 0.89514 0.97718 0.92104 0.92577 0.91705 0.93897 0.89553 0.91204 0.93038 0.92003 0.83919 0.91801 0.91629 0.92088 0.93335 0.93626 0.97653 1.00552 0.93075 0.90295 0.87478 0.89974 0.90913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.75 8.63 71.98 0.62 -2.13 16 2 C -0.09 -1.76 5.65 30.59 0.17 -1.59 16 3 C -0.11 -2.67 1.38 -51.48 -0.07 -2.74 16 4 C 0.07 1.83 5.18 86.30 0.45 2.28 16 5 N -0.69 -21.05 4.57 -491.58 -2.25 -23.30 16 6 C 0.09 2.94 2.59 44.92 0.12 3.05 16 7 H 0.06 2.08 7.80 -2.39 -0.02 2.06 16 8 C -0.17 -3.97 9.16 71.98 0.66 -3.31 16 9 C -0.09 -3.66 4.83 30.60 0.15 -3.51 16 10 C 0.04 2.16 4.86 29.85 0.15 2.30 16 11 C -0.54 -32.00 9.11 25.60 0.23 -31.76 16 12 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 13 C 0.00 0.02 5.46 84.65 0.46 0.48 16 14 N -0.93 -58.49 13.29 21.45 0.28 -58.21 16 15 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 16 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C 0.04 0.98 7.59 72.30 0.55 1.53 16 20 O -0.40 -12.06 10.87 -148.98 -1.62 -13.68 16 21 C 0.04 1.33 7.59 72.30 0.55 1.88 16 22 H 0.06 1.08 6.53 -2.39 -0.02 1.06 16 23 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 24 H 0.04 0.97 6.53 -2.39 -0.02 0.95 16 25 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 1.06 7.44 -2.39 -0.02 1.04 16 28 H 0.06 1.75 8.05 -2.39 -0.02 1.73 16 29 H 0.34 9.31 6.18 -89.69 -0.55 8.76 16 30 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.06 1.29 7.45 -2.39 -0.02 1.28 16 32 H 0.06 1.36 8.13 -2.38 -0.02 1.34 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.85 16 35 H 0.01 0.30 7.75 -2.39 -0.02 0.28 16 36 H -0.02 -1.42 8.14 -2.39 -0.02 -1.44 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.08 1.78 5.97 -2.39 -0.01 1.77 16 39 H 0.11 1.90 7.33 -2.39 -0.02 1.88 16 40 H 0.08 2.43 7.33 -2.39 -0.02 2.41 16 41 H 0.07 2.75 7.28 -2.39 -0.02 2.73 16 Total: -1.00 -67.26 318.43 2.90 -64.36 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.43 Total: 16.66 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.03 Total: -33.51 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -1.96 Total: -81.50 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -1.62 Total: -13.68 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -67.26 2.90 -64.36 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482617.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.824 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds