Wall clock time and date at job start Sun Mar 29 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47353 * 2 1 4 4 H 1.08993 * 109.50713 * 301.15490 * 3 2 1 5 5 C 1.53100 * 109.50129 * 61.23946 * 3 2 1 6 6 O 1.43015 * 109.25875 * 176.82911 * 5 3 2 7 7 C 1.43014 * 113.73620 * 301.33206 * 6 5 3 8 8 C 1.53096 * 109.26291 * 58.66534 * 7 6 5 9 9 N 1.47009 * 109.25708 * 303.15467 * 8 7 6 10 10 C 1.46902 * 110.99615 * 182.38853 * 9 8 7 11 11 H 1.09010 * 109.47040 * 203.90414 * 10 9 8 12 12 C 1.52995 * 109.47182 * 83.90884 * 10 9 8 13 13 C 1.52997 * 109.47329 * 323.90232 * 10 9 8 14 14 C 1.52993 * 109.47293 * 297.17791 * 13 10 9 15 15 C 1.50702 * 109.47084 * 186.29415 * 14 13 10 16 16 H 1.07991 * 120.00162 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00627 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99746 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46848 * 60.00244 * 19 17 15 21 21 H 1.48505 * 109.46966 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47064 * 300.00064 * 19 17 15 23 23 H 1.08998 * 109.46668 * 304.70839 * 1 2 3 24 24 H 1.08997 * 109.47295 * 64.70929 * 1 2 3 25 25 H 1.09001 * 109.47179 * 184.71365 * 1 2 3 26 26 H 1.09001 * 109.46787 * 240.00793 * 2 1 3 27 27 H 1.08995 * 109.47818 * 120.00334 * 2 1 3 28 28 H 1.09003 * 109.50923 * 56.89494 * 5 3 2 29 29 H 1.08999 * 109.54545 * 296.78190 * 5 3 2 30 30 H 1.09004 * 109.51029 * 178.60266 * 7 6 5 31 31 H 1.09007 * 109.50480 * 298.73037 * 7 6 5 32 32 H 1.09001 * 109.50558 * 63.08837 * 8 7 6 33 33 H 1.08998 * 109.50870 * 183.21459 * 8 7 6 34 34 H 1.09004 * 109.47585 * 64.96467 * 12 10 9 35 35 H 1.09003 * 109.47352 * 184.96265 * 12 10 9 36 36 H 1.09004 * 109.47142 * 304.96107 * 12 10 9 37 37 H 1.08998 * 109.47147 * 57.18085 * 13 10 9 38 38 H 1.09001 * 109.47098 * 177.17600 * 13 10 9 39 39 H 1.09005 * 109.47517 * 306.29696 * 14 13 10 40 40 H 1.08997 * 109.47020 * 66.29247 * 14 13 10 41 41 H 0.96998 * 120.00380 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6603 1.9628 -0.8792 5 6 1.5558 2.1559 1.2651 6 8 2.0961 3.4797 1.2964 7 6 3.5255 3.5187 1.2736 8 6 4.0298 2.8191 0.0086 9 7 3.5100 1.4444 -0.0251 10 6 4.0174 0.7184 -1.1971 11 1 3.3347 -0.0947 -1.4444 12 6 5.4005 0.1451 -0.8824 13 6 4.1207 1.6767 -2.3853 14 6 2.7270 2.1957 -2.7447 15 6 2.8062 3.0154 -4.0068 16 1 3.7555 3.1522 -4.5031 17 6 1.6667 3.5907 -4.5277 18 7 0.5107 3.4247 -3.9230 19 14 1.7650 4.6075 -6.0918 20 1 2.2791 3.7628 -7.1996 21 1 0.4122 5.1111 -6.4406 22 1 2.6816 5.7561 -5.8786 23 1 -0.3632 0.5852 0.8448 24 1 -0.3634 0.4390 -0.9291 25 1 -0.3633 -1.0242 0.0844 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.8907 1.6053 2.1443 29 1 0.4670 2.2072 1.2607 30 1 3.8614 4.5557 1.2744 31 1 3.9176 3.0078 2.1530 32 1 3.6818 3.3615 -0.8705 33 1 5.1195 2.7962 0.0151 34 1 5.3131 -0.6032 -0.0946 35 1 5.8146 -0.3173 -1.7784 36 1 6.0593 0.9474 -0.5500 37 1 4.7637 2.5160 -2.1204 38 1 4.5442 1.1505 -3.2408 39 1 2.0543 1.3523 -2.9008 40 1 2.3495 2.8158 -1.9317 41 1 -0.2911 3.8291 -4.2897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:03 Heat of formation + Delta-G solvation = -47.753282 kcal Electronic energy + Delta-G solvation = -19177.873347 eV Core-core repulsion = 16478.695784 eV Total energy + Delta-G solvation = -2699.177563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.86378 -36.62827 -34.21428 -33.02970 -31.19329 -29.59964 -29.10349 -25.95119 -24.98435 -24.48259 -21.75530 -21.36227 -19.87429 -18.93155 -16.48726 -16.22936 -15.72363 -14.97255 -14.63307 -14.43860 -14.23639 -13.94431 -13.55863 -12.90235 -12.68467 -12.57168 -12.05771 -11.88688 -11.66846 -11.48753 -11.26245 -11.21242 -10.98139 -10.86570 -10.73346 -10.52827 -10.37806 -10.08695 -9.93827 -9.55309 -9.29917 -9.17758 -9.01648 -8.35009 -7.53925 -6.00131 -4.02541 3.32123 3.36808 3.39080 4.20957 4.33136 4.45382 5.16897 5.28162 5.34792 5.35990 5.53118 5.55438 5.61477 5.71580 5.77884 5.80089 5.83736 5.93892 5.96412 6.09844 6.12059 6.19447 6.27408 6.33185 6.41971 6.46622 6.49247 6.60147 6.66244 6.73699 6.86357 7.09203 7.50538 7.58410 7.62719 7.65287 7.79492 7.97699 8.42568 9.02984 9.61315 11.10278 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.008101 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.684728 B = 3455.593384 C = 3671.240350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C 0.021 3.979 4 H 0.097 0.903 5 C 0.073 3.927 6 O -0.385 6.385 7 C 0.066 3.934 8 C 0.005 3.995 9 N -0.522 5.522 10 C 0.067 3.933 11 H 0.080 0.920 12 C -0.133 4.133 13 C -0.142 4.142 14 C 0.017 3.983 15 C -0.523 4.523 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.013 0.987 40 H 0.030 0.970 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -5.203 9.869 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.149 4.149 3 C -0.087 4.087 4 H 0.115 0.885 5 C -0.004 4.004 6 O -0.303 6.303 7 C -0.011 4.011 8 C -0.123 4.123 9 N -0.247 5.247 10 C -0.041 4.041 11 H 0.098 0.902 12 C -0.191 4.191 13 C -0.181 4.181 14 C -0.020 4.020 15 C -0.561 4.561 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.069 0.931 26 H 0.086 0.914 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.108 0.892 31 H 0.066 0.934 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.031 0.969 40 H 0.048 0.952 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.048 -5.232 10.293 12.236 hybrid contribution -0.057 0.742 -1.713 1.868 sum 3.991 -4.490 8.580 10.474 Atomic orbital electron populations 1.21818 0.95697 1.01099 1.02545 1.21523 0.95537 0.95862 1.01989 1.22798 0.88481 0.97021 1.00360 0.88547 1.22714 0.98345 0.83038 0.96293 1.87980 1.20165 1.27355 1.94807 1.22621 0.81329 1.00409 0.96722 1.22931 0.99919 0.90295 0.99120 1.62515 1.07506 1.14127 1.40585 1.21954 0.96052 0.96816 0.89261 0.90185 1.21734 0.96591 1.00251 1.00529 1.22340 1.01478 0.98035 0.96225 1.19388 0.90256 0.95857 0.96474 1.21211 0.93857 1.31609 1.09458 0.93004 1.24991 0.95524 0.96469 0.97211 1.69934 0.98685 1.44763 1.39686 0.86704 0.77063 0.80664 0.83838 1.20348 1.21271 1.20299 0.92837 0.91785 0.93075 0.91383 0.92158 0.93501 0.88912 0.89195 0.93371 0.90882 0.90642 0.93056 0.92922 0.93224 0.92892 0.93040 0.96889 0.95204 0.92967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.71 37.16 0.36 -1.83 16 2 C -0.11 -1.71 5.29 -26.73 -0.14 -1.85 16 3 C 0.02 0.38 1.75 -67.60 -0.12 0.26 16 4 H 0.10 2.13 4.40 -51.93 -0.23 1.90 16 5 C 0.07 1.20 5.88 37.21 0.22 1.42 16 6 O -0.38 -7.02 10.83 -35.23 -0.38 -7.40 16 7 C 0.07 1.04 7.01 37.21 0.26 1.30 16 8 C 0.01 0.09 4.22 -3.71 -0.02 0.08 16 9 N -0.52 -8.90 4.37 -218.42 -0.96 -9.85 16 10 C 0.07 1.16 2.39 -67.72 -0.16 1.00 16 11 H 0.08 1.42 5.30 -51.92 -0.28 1.14 16 12 C -0.13 -1.92 9.43 37.16 0.35 -1.57 16 13 C -0.14 -2.92 4.10 -26.74 -0.11 -3.03 16 14 C 0.02 0.42 3.16 -27.89 -0.09 0.33 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.11 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H 0.05 0.70 6.30 -51.93 -0.33 0.37 16 24 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.10 5.86 -51.93 -0.30 0.80 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.43 6.54 -51.93 -0.34 1.09 16 30 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.07 1.51 4.78 -51.93 -0.25 1.26 16 33 H 0.08 1.16 7.14 -51.93 -0.37 0.79 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.70 7.25 -51.93 -0.38 0.32 16 37 H 0.05 1.08 6.25 -51.93 -0.32 0.75 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.01 0.35 8.07 -51.93 -0.42 -0.07 16 40 H 0.03 0.80 4.18 -51.93 -0.22 0.59 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 302.24 15.07 4.55 4.55 Total: -1.00 -29.73 302.24 -7.70 -37.43 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.78 Total: 1.64 kcal Atomic # 6 Polarization: -17.54 SS G_CDS: 0.15 Total: -17.39 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: -0.22 Total: -35.65 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: -0.38 Total: -7.40 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -29.73 -7.70 -37.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.321 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds