Wall clock time and date at job start Sun Mar 29 2020 22:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47353 * 2 1 4 4 H 1.08993 * 109.50713 * 301.15490 * 3 2 1 5 5 C 1.53100 * 109.50129 * 61.23946 * 3 2 1 6 6 O 1.43015 * 109.25875 * 176.82911 * 5 3 2 7 7 C 1.43014 * 113.73620 * 301.33206 * 6 5 3 8 8 C 1.53096 * 109.26291 * 58.66534 * 7 6 5 9 9 N 1.47009 * 109.25708 * 303.15467 * 8 7 6 10 10 C 1.46902 * 110.99615 * 182.38853 * 9 8 7 11 11 H 1.09010 * 109.47040 * 203.90414 * 10 9 8 12 12 C 1.52995 * 109.47182 * 83.90884 * 10 9 8 13 13 C 1.52997 * 109.47329 * 323.90232 * 10 9 8 14 14 C 1.52993 * 109.47293 * 297.17791 * 13 10 9 15 15 C 1.50702 * 109.47084 * 186.29415 * 14 13 10 16 16 H 1.07991 * 120.00162 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00627 * 0.02562 * 17 15 14 19 19 Si 1.86808 * 119.99746 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46848 * 60.00244 * 19 17 15 21 21 H 1.48505 * 109.46966 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47064 * 300.00064 * 19 17 15 23 23 H 1.08998 * 109.46668 * 304.70839 * 1 2 3 24 24 H 1.08997 * 109.47295 * 64.70929 * 1 2 3 25 25 H 1.09001 * 109.47179 * 184.71365 * 1 2 3 26 26 H 1.09001 * 109.46787 * 240.00793 * 2 1 3 27 27 H 1.08995 * 109.47818 * 120.00334 * 2 1 3 28 28 H 1.09003 * 109.50923 * 56.89494 * 5 3 2 29 29 H 1.08999 * 109.54545 * 296.78190 * 5 3 2 30 30 H 1.09004 * 109.51029 * 178.60266 * 7 6 5 31 31 H 1.09007 * 109.50480 * 298.73037 * 7 6 5 32 32 H 1.09001 * 109.50558 * 63.08837 * 8 7 6 33 33 H 1.08998 * 109.50870 * 183.21459 * 8 7 6 34 34 H 1.09004 * 109.47585 * 64.96467 * 12 10 9 35 35 H 1.09003 * 109.47352 * 184.96265 * 12 10 9 36 36 H 1.09004 * 109.47142 * 304.96107 * 12 10 9 37 37 H 1.08998 * 109.47147 * 57.18085 * 13 10 9 38 38 H 1.09001 * 109.47098 * 177.17600 * 13 10 9 39 39 H 1.09005 * 109.47517 * 306.29696 * 14 13 10 40 40 H 1.08997 * 109.47020 * 66.29247 * 14 13 10 41 41 H 0.96998 * 120.00380 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6603 1.9628 -0.8792 5 6 1.5558 2.1559 1.2651 6 8 2.0961 3.4797 1.2964 7 6 3.5255 3.5187 1.2736 8 6 4.0298 2.8191 0.0086 9 7 3.5100 1.4444 -0.0251 10 6 4.0174 0.7184 -1.1971 11 1 3.3347 -0.0947 -1.4444 12 6 5.4005 0.1451 -0.8824 13 6 4.1207 1.6767 -2.3853 14 6 2.7270 2.1957 -2.7447 15 6 2.8062 3.0154 -4.0068 16 1 3.7555 3.1522 -4.5031 17 6 1.6667 3.5907 -4.5277 18 7 0.5107 3.4247 -3.9230 19 14 1.7650 4.6075 -6.0918 20 1 2.2791 3.7628 -7.1996 21 1 0.4122 5.1111 -6.4406 22 1 2.6816 5.7561 -5.8786 23 1 -0.3632 0.5852 0.8448 24 1 -0.3634 0.4390 -0.9291 25 1 -0.3633 -1.0242 0.0844 26 1 1.8933 -0.5137 -0.8901 27 1 1.8934 -0.5138 0.8899 28 1 1.8907 1.6053 2.1443 29 1 0.4670 2.2072 1.2607 30 1 3.8614 4.5557 1.2744 31 1 3.9176 3.0078 2.1530 32 1 3.6818 3.3615 -0.8705 33 1 5.1195 2.7962 0.0151 34 1 5.3131 -0.6032 -0.0946 35 1 5.8146 -0.3173 -1.7784 36 1 6.0593 0.9474 -0.5500 37 1 4.7637 2.5160 -2.1204 38 1 4.5442 1.1505 -3.2408 39 1 2.0543 1.3523 -2.9008 40 1 2.3495 2.8158 -1.9317 41 1 -0.2911 3.8291 -4.2897 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:03 Heat of formation + Delta-G solvation = -67.301447 kcal Electronic energy + Delta-G solvation = -19178.721019 eV Core-core repulsion = 16478.695784 eV Total energy + Delta-G solvation = -2700.025235 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.26186 -38.06061 -35.63126 -35.02268 -32.72747 -31.34435 -30.37717 -27.28057 -26.91585 -25.80204 -23.47136 -22.67439 -21.44308 -20.42561 -18.36361 -17.84009 -17.07151 -16.57943 -16.32783 -16.07680 -15.57399 -15.32867 -14.94377 -14.49348 -14.19398 -13.90311 -13.70105 -13.26435 -13.23853 -13.06834 -12.87594 -12.75993 -12.54977 -12.39429 -12.21192 -12.08479 -11.87339 -11.69535 -11.32291 -11.22067 -11.10732 -10.98406 -10.55418 -10.41660 -9.06654 -8.20570 -6.32104 1.34534 1.36987 1.44883 2.37018 2.88023 3.03521 3.11005 3.83296 3.97072 4.05546 4.22128 4.27738 4.33468 4.38482 4.43726 4.50564 4.54317 4.63734 4.68438 4.75412 4.84760 4.89411 4.91948 4.97421 5.07994 5.11391 5.12474 5.22843 5.27676 5.32025 5.41221 5.49528 5.50252 5.73526 5.84950 6.14057 6.20008 6.25073 6.30180 6.84079 7.36257 8.88863 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020528 B = 0.008101 C = 0.007625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.684728 B = 3455.593384 C = 3671.240350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.105 4.105 3 C 0.022 3.978 4 H 0.044 0.956 5 C 0.074 3.926 6 O -0.412 6.412 7 C 0.066 3.934 8 C 0.007 3.993 9 N -0.508 5.508 10 C 0.069 3.931 11 H 0.074 0.926 12 C -0.124 4.124 13 C -0.131 4.131 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.925 5.925 19 Si 0.957 3.043 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.269 1.269 23 H 0.066 0.934 24 H 0.029 0.971 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.073 0.927 32 H 0.029 0.971 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.048 0.952 39 H -0.019 1.019 40 H 0.012 0.988 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.496 -5.742 10.883 13.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.087 4.087 4 H 0.062 0.938 5 C -0.002 4.002 6 O -0.331 6.331 7 C -0.011 4.011 8 C -0.122 4.122 9 N -0.233 5.233 10 C -0.039 4.039 11 H 0.092 0.908 12 C -0.181 4.181 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.193 4.193 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.194 1.194 23 H 0.085 0.915 24 H 0.048 0.952 25 H 0.093 0.907 26 H 0.073 0.927 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.122 0.878 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.067 0.933 39 H -0.001 1.001 40 H 0.030 0.970 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.376 -5.777 11.309 13.790 hybrid contribution -0.482 0.918 -2.027 2.276 sum 4.894 -4.860 9.282 11.564 Atomic orbital electron populations 1.21782 0.95054 1.02551 1.01318 1.21481 0.96092 0.94304 1.02401 1.22716 0.88890 0.98074 0.99001 0.93838 1.22782 0.98653 0.82519 0.96271 1.87943 1.21746 1.28493 1.94872 1.22783 0.80130 1.01536 0.96631 1.22930 1.01061 0.89871 0.98293 1.62664 1.06965 1.13946 1.39683 1.21966 0.98094 0.95782 0.88040 0.90803 1.21652 0.94178 1.00716 1.01580 1.22201 0.98272 0.98759 0.97766 1.19180 0.92327 0.94030 0.94950 1.21691 0.94022 1.32215 1.10718 0.92977 1.25889 0.95113 0.97657 1.00688 1.70080 0.99351 1.45705 1.41327 0.85622 0.77344 0.79134 0.79687 1.19305 1.20727 1.19405 0.91467 0.95156 0.90669 0.92718 0.89695 0.90964 0.88627 0.87766 0.90858 0.95228 0.88552 0.91342 0.92026 0.92570 0.92753 0.93347 1.00084 0.97030 0.92923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.71 71.98 0.70 -3.52 16 2 C -0.11 -3.17 5.29 30.60 0.16 -3.01 16 3 C 0.02 0.78 1.75 44.93 0.08 0.86 16 4 H 0.04 2.06 4.40 -2.39 -0.01 2.05 16 5 C 0.07 2.37 5.88 72.02 0.42 2.80 16 6 O -0.41 -14.82 10.83 -148.98 -1.61 -16.44 16 7 C 0.07 1.96 7.01 72.01 0.50 2.46 16 8 C 0.01 0.22 4.22 86.31 0.36 0.59 16 9 N -0.51 -16.88 4.37 -844.95 -3.70 -20.58 16 10 C 0.07 2.35 2.39 44.91 0.11 2.46 16 11 H 0.07 2.62 5.30 -2.38 -0.01 2.61 16 12 C -0.12 -3.24 9.43 71.98 0.68 -2.56 16 13 C -0.13 -5.49 4.10 30.59 0.13 -5.36 16 14 C 0.03 1.68 3.16 29.85 0.09 1.77 16 15 C -0.55 -32.02 9.11 25.60 0.23 -31.79 16 16 H 0.05 2.95 7.74 -2.92 -0.02 2.93 16 17 C 0.00 0.29 5.46 84.65 0.46 0.75 16 18 N -0.92 -57.07 13.29 21.45 0.28 -56.79 16 19 Si 0.96 45.38 29.54 68.60 2.03 47.41 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 23 H 0.07 1.69 6.30 -2.39 -0.02 1.68 16 24 H 0.03 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.05 1.79 5.86 -2.39 -0.01 1.77 16 27 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.10 2.92 6.54 -2.39 -0.02 2.91 16 30 H 0.10 2.75 8.14 -2.38 -0.02 2.73 16 31 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 32 H 0.03 1.26 4.78 -2.39 -0.01 1.25 16 33 H 0.10 2.79 7.14 -2.39 -0.02 2.77 16 34 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.40 7.25 -2.38 -0.02 1.39 16 37 H 0.05 2.24 6.25 -2.39 -0.01 2.22 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H -0.02 -1.12 8.07 -2.38 -0.02 -1.14 16 40 H 0.01 0.67 4.18 -2.39 -0.01 0.66 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.28 302.24 1.93 -64.35 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 1.00 Total: 16.58 kcal Atomic # 6 Polarization: -38.48 SS G_CDS: 3.93 Total: -34.54 kcal Atomic # 7 Polarization: -73.95 SS G_CDS: -3.41 Total: -77.37 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -1.61 Total: -16.44 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.28 1.93 -64.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.948 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds