Wall clock time and date at job start Sun Mar 29 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46670 * 2 1 4 4 H 1.08998 * 109.54409 * 57.58481 * 3 2 1 5 5 C 1.53093 * 109.50845 * 297.46722 * 3 2 1 6 6 O 1.43012 * 109.25884 * 183.21872 * 5 3 2 7 7 C 1.43021 * 113.73896 * 58.67328 * 6 5 3 8 8 C 1.53101 * 109.25642 * 301.33104 * 7 6 5 9 9 N 1.47012 * 109.25863 * 56.84740 * 8 7 6 10 10 C 1.46901 * 110.99911 * 177.60821 * 9 8 7 11 11 H 1.09002 * 109.47038 * 155.41935 * 10 9 8 12 12 C 1.53003 * 109.46925 * 275.41988 * 10 9 8 13 13 C 1.53006 * 109.47103 * 35.41718 * 10 9 8 14 14 C 1.53007 * 109.46717 * 61.90239 * 13 10 9 15 15 C 1.50706 * 109.46498 * 173.30714 * 14 13 10 16 16 H 1.07996 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99739 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99796 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46892 * 60.00404 * 19 17 15 21 21 H 1.48503 * 109.47056 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46884 * 300.00313 * 19 17 15 23 23 H 1.09001 * 109.47261 * 305.45430 * 1 2 3 24 24 H 1.08997 * 109.47306 * 65.44862 * 1 2 3 25 25 H 1.09000 * 109.47096 * 185.45390 * 1 2 3 26 26 H 1.08994 * 109.47189 * 240.00280 * 2 1 3 27 27 H 1.08998 * 109.46925 * 119.99799 * 2 1 3 28 28 H 1.08997 * 109.50998 * 303.15505 * 5 3 2 29 29 H 1.08998 * 109.50465 * 63.24698 * 5 3 2 30 30 H 1.08997 * 109.50430 * 61.26268 * 7 6 5 31 31 H 1.09000 * 109.50743 * 181.34989 * 7 6 5 32 32 H 1.09006 * 109.50354 * 296.91309 * 8 7 6 33 33 H 1.09003 * 109.50240 * 176.78459 * 8 7 6 34 34 H 1.09000 * 109.46756 * 175.09244 * 12 10 9 35 35 H 1.08994 * 109.46696 * 295.09394 * 12 10 9 36 36 H 1.08996 * 109.47036 * 55.09393 * 12 10 9 37 37 H 1.08993 * 109.46763 * 181.89790 * 13 10 9 38 38 H 1.08997 * 109.47079 * 301.90267 * 13 10 9 39 39 H 1.08995 * 109.47280 * 293.30377 * 14 13 10 40 40 H 1.08999 * 109.47083 * 53.31330 * 14 13 10 41 41 H 0.96997 * 119.99726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6423 1.9699 0.8671 5 6 1.5828 2.1464 -1.2804 6 8 2.1245 3.4696 -1.3104 7 6 3.5532 3.5081 -1.2581 8 6 4.0304 2.8180 0.0225 9 7 3.5091 1.4438 0.0559 10 6 3.9913 0.7266 1.2437 11 1 3.2968 -0.0767 1.4900 12 6 5.3732 0.1359 0.9567 13 6 4.0866 1.6977 2.4222 14 6 2.6963 2.2524 2.7396 15 6 2.7606 3.0785 3.9984 16 1 3.6991 3.1964 4.5196 17 6 1.6213 3.6845 4.4841 18 7 0.4785 3.5412 3.8490 19 14 1.7009 4.7090 6.0440 20 1 2.6505 5.8340 5.8494 21 1 0.3516 5.2473 6.3521 22 1 2.1638 3.8598 7.1708 23 1 -0.3634 0.5961 0.8371 24 1 -0.3634 0.4270 -0.9347 25 1 -0.3633 -1.0230 0.0977 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9355 1.5889 -2.1480 29 1 0.4942 2.1977 -1.2986 30 1 3.9632 2.9902 -2.1251 31 1 3.8897 4.5449 -1.2608 32 1 3.6645 3.3674 0.8900 33 1 5.1201 2.7945 0.0388 34 1 5.7686 -0.3210 1.8639 35 1 5.2902 -0.6198 0.1757 36 1 6.0453 0.9278 0.6261 37 1 4.4763 1.1732 3.2946 38 1 4.7550 2.5188 2.1632 39 1 2.3565 2.8760 1.9128 40 1 1.9995 1.4264 2.8822 41 1 -0.3230 3.9673 4.1909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:05 Heat of formation + Delta-G solvation = -48.188439 kcal Electronic energy + Delta-G solvation = -19181.096122 eV Core-core repulsion = 16481.899689 eV Total energy + Delta-G solvation = -2699.196433 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.86212 -36.62559 -34.21027 -33.01823 -31.18482 -29.60964 -29.11142 -25.94835 -24.98087 -24.46140 -21.76273 -21.34865 -19.87505 -18.94132 -16.47106 -16.23253 -15.72633 -14.96382 -14.62414 -14.43287 -14.23462 -13.95327 -13.56231 -12.89810 -12.68243 -12.56978 -12.05184 -11.86696 -11.67040 -11.48123 -11.26020 -11.20654 -10.98997 -10.86954 -10.73590 -10.52821 -10.36864 -10.09562 -9.94071 -9.56338 -9.30009 -9.17722 -9.01393 -8.34991 -7.53812 -6.00139 -4.02540 3.32115 3.36821 3.39073 4.21337 4.34066 4.45416 5.16263 5.27968 5.34817 5.36557 5.53460 5.56111 5.61004 5.72192 5.77905 5.80791 5.83883 5.93463 5.97617 6.09824 6.12252 6.19975 6.27333 6.32803 6.41517 6.46817 6.49749 6.60237 6.66358 6.73391 6.86289 7.09121 7.50982 7.58683 7.63135 7.65164 7.79272 7.97769 8.42519 9.02986 9.61305 11.10287 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.008104 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.836506 B = 3454.329354 C = 3665.879255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C 0.023 3.977 4 H 0.096 0.904 5 C 0.074 3.926 6 O -0.385 6.385 7 C 0.066 3.934 8 C 0.004 3.996 9 N -0.523 5.523 10 C 0.067 3.933 11 H 0.080 0.920 12 C -0.133 4.133 13 C -0.142 4.142 14 C 0.016 3.984 15 C -0.523 4.523 16 H 0.052 0.948 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.278 1.278 23 H 0.064 0.936 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.050 0.950 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.030 0.970 40 H 0.013 0.987 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.268 -5.462 -9.662 11.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.150 4.150 3 C -0.085 4.085 4 H 0.113 0.887 5 C -0.003 4.003 6 O -0.303 6.303 7 C -0.011 4.011 8 C -0.124 4.124 9 N -0.247 5.247 10 C -0.041 4.041 11 H 0.098 0.902 12 C -0.191 4.191 13 C -0.180 4.180 14 C -0.020 4.020 15 C -0.561 4.561 16 H 0.070 0.930 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.065 0.935 29 H 0.110 0.890 30 H 0.066 0.934 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.031 0.969 41 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.142 -5.490 -10.091 12.211 hybrid contribution -0.084 0.755 1.700 1.862 sum 4.057 -4.735 -8.391 10.454 Atomic orbital electron populations 1.21804 0.95689 1.01440 1.02180 1.21533 0.95538 0.95870 1.02015 1.22795 0.88580 0.96988 1.00185 0.88659 1.22685 0.98374 0.83084 0.96175 1.87980 1.20256 1.27389 1.94671 1.22620 0.81379 1.00445 0.96627 1.22960 0.99993 0.90342 0.99079 1.62516 1.08125 1.14505 1.39602 1.21960 0.96214 0.96794 0.89134 0.90196 1.21731 0.96627 1.00200 1.00532 1.22337 1.01452 0.97939 0.96313 1.19394 0.90265 0.95708 0.96628 1.21214 0.94581 1.30814 1.09531 0.93003 1.24993 0.95556 0.96537 0.97122 1.69939 0.99337 1.44259 1.39525 0.86701 0.77065 0.80665 0.83823 1.20301 1.21273 1.20348 0.91698 0.93003 0.93036 0.92136 0.91365 0.93509 0.88985 0.93398 0.89197 0.90702 0.90666 0.92933 0.93063 0.93220 0.93033 0.92921 0.95196 0.96877 0.92970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.47 37.16 0.35 -1.82 16 2 C -0.11 -1.71 5.31 -26.73 -0.14 -1.85 16 3 C 0.02 0.40 1.74 -67.60 -0.12 0.28 16 4 H 0.10 2.11 4.44 -51.93 -0.23 1.87 16 5 C 0.07 1.21 5.91 37.21 0.22 1.43 16 6 O -0.38 -7.04 10.83 -35.23 -0.38 -7.42 16 7 C 0.07 1.05 7.01 37.21 0.26 1.31 16 8 C 0.00 0.07 4.21 -3.71 -0.02 0.06 16 9 N -0.52 -8.91 4.37 -218.40 -0.95 -9.86 16 10 C 0.07 1.16 2.39 -67.71 -0.16 0.99 16 11 H 0.08 1.41 5.28 -51.93 -0.27 1.14 16 12 C -0.13 -1.92 9.44 37.16 0.35 -1.57 16 13 C -0.14 -2.91 4.10 -26.72 -0.11 -3.02 16 14 C 0.02 0.41 3.11 -27.88 -0.09 0.33 16 15 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 24 H 0.05 0.66 6.86 -51.93 -0.36 0.30 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.09 5.80 -51.93 -0.30 0.79 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.09 1.42 6.80 -51.93 -0.35 1.07 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.07 1.56 4.67 -51.93 -0.24 1.32 16 33 H 0.07 1.17 7.16 -51.93 -0.37 0.79 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.70 7.30 -51.93 -0.38 0.32 16 37 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.05 1.07 6.31 -51.93 -0.33 0.74 16 39 H 0.03 0.81 4.17 -51.93 -0.22 0.59 16 40 H 0.01 0.35 8.01 -51.93 -0.42 -0.06 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 302.70 15.07 4.56 4.56 Total: -1.00 -29.73 302.70 -7.73 -37.46 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -6.81 Total: 1.61 kcal Atomic # 6 Polarization: -17.50 SS G_CDS: 0.14 Total: -17.36 kcal Atomic # 7 Polarization: -35.45 SS G_CDS: -0.22 Total: -35.66 kcal Atomic # 8 Polarization: -7.04 SS G_CDS: -0.38 Total: -7.42 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.73 -7.73 -37.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.729 kcal (2) G-P(sol) polarization free energy of solvation -29.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds