Wall clock time and date at job start Sun Mar 29 2020 22:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46670 * 2 1 4 4 H 1.08998 * 109.54409 * 57.58481 * 3 2 1 5 5 C 1.53093 * 109.50845 * 297.46722 * 3 2 1 6 6 O 1.43012 * 109.25884 * 183.21872 * 5 3 2 7 7 C 1.43021 * 113.73896 * 58.67328 * 6 5 3 8 8 C 1.53101 * 109.25642 * 301.33104 * 7 6 5 9 9 N 1.47012 * 109.25863 * 56.84740 * 8 7 6 10 10 C 1.46901 * 110.99911 * 177.60821 * 9 8 7 11 11 H 1.09002 * 109.47038 * 155.41935 * 10 9 8 12 12 C 1.53003 * 109.46925 * 275.41988 * 10 9 8 13 13 C 1.53006 * 109.47103 * 35.41718 * 10 9 8 14 14 C 1.53007 * 109.46717 * 61.90239 * 13 10 9 15 15 C 1.50706 * 109.46498 * 173.30714 * 14 13 10 16 16 H 1.07996 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99739 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99796 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00129 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46892 * 60.00404 * 19 17 15 21 21 H 1.48503 * 109.47056 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.46884 * 300.00313 * 19 17 15 23 23 H 1.09001 * 109.47261 * 305.45430 * 1 2 3 24 24 H 1.08997 * 109.47306 * 65.44862 * 1 2 3 25 25 H 1.09000 * 109.47096 * 185.45390 * 1 2 3 26 26 H 1.08994 * 109.47189 * 240.00280 * 2 1 3 27 27 H 1.08998 * 109.46925 * 119.99799 * 2 1 3 28 28 H 1.08997 * 109.50998 * 303.15505 * 5 3 2 29 29 H 1.08998 * 109.50465 * 63.24698 * 5 3 2 30 30 H 1.08997 * 109.50430 * 61.26268 * 7 6 5 31 31 H 1.09000 * 109.50743 * 181.34989 * 7 6 5 32 32 H 1.09006 * 109.50354 * 296.91309 * 8 7 6 33 33 H 1.09003 * 109.50240 * 176.78459 * 8 7 6 34 34 H 1.09000 * 109.46756 * 175.09244 * 12 10 9 35 35 H 1.08994 * 109.46696 * 295.09394 * 12 10 9 36 36 H 1.08996 * 109.47036 * 55.09393 * 12 10 9 37 37 H 1.08993 * 109.46763 * 181.89790 * 13 10 9 38 38 H 1.08997 * 109.47079 * 301.90267 * 13 10 9 39 39 H 1.08995 * 109.47280 * 293.30377 * 14 13 10 40 40 H 1.08999 * 109.47083 * 53.31330 * 14 13 10 41 41 H 0.96997 * 119.99726 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6423 1.9699 0.8671 5 6 1.5828 2.1464 -1.2804 6 8 2.1245 3.4696 -1.3104 7 6 3.5532 3.5081 -1.2581 8 6 4.0304 2.8180 0.0225 9 7 3.5091 1.4438 0.0559 10 6 3.9913 0.7266 1.2437 11 1 3.2968 -0.0767 1.4900 12 6 5.3732 0.1359 0.9567 13 6 4.0866 1.6977 2.4222 14 6 2.6963 2.2524 2.7396 15 6 2.7606 3.0785 3.9984 16 1 3.6991 3.1964 4.5196 17 6 1.6213 3.6845 4.4841 18 7 0.4785 3.5412 3.8490 19 14 1.7009 4.7090 6.0440 20 1 2.6505 5.8340 5.8494 21 1 0.3516 5.2473 6.3521 22 1 2.1638 3.8598 7.1708 23 1 -0.3634 0.5961 0.8371 24 1 -0.3634 0.4270 -0.9347 25 1 -0.3633 -1.0230 0.0977 26 1 1.8934 -0.5138 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.9355 1.5889 -2.1480 29 1 0.4942 2.1977 -1.2986 30 1 3.9632 2.9902 -2.1251 31 1 3.8897 4.5449 -1.2608 32 1 3.6645 3.3674 0.8900 33 1 5.1201 2.7945 0.0388 34 1 5.7686 -0.3210 1.8639 35 1 5.2902 -0.6198 0.1757 36 1 6.0453 0.9278 0.6261 37 1 4.4763 1.1732 3.2946 38 1 4.7550 2.5188 2.1632 39 1 2.3565 2.8760 1.9128 40 1 1.9995 1.4264 2.8822 41 1 -0.3230 3.9673 4.1909 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499232.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:05 Heat of formation + Delta-G solvation = -67.713191 kcal Electronic energy + Delta-G solvation = -19181.942779 eV Core-core repulsion = 16481.899689 eV Total energy + Delta-G solvation = -2700.043090 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.26244 -38.06033 -35.63190 -35.00714 -32.71411 -31.35681 -30.38700 -27.27887 -26.91512 -25.77822 -23.47959 -22.65870 -21.44592 -20.43568 -18.36115 -17.83260 -17.07525 -16.58394 -16.31050 -16.06981 -15.57743 -15.33662 -14.94810 -14.49607 -14.17649 -13.90280 -13.70601 -13.26039 -13.21286 -13.05883 -12.87307 -12.76043 -12.54002 -12.39457 -12.21779 -12.08312 -11.87975 -11.70462 -11.32829 -11.23013 -11.11076 -10.98190 -10.55520 -10.41484 -9.06558 -8.20555 -6.32082 1.34564 1.37015 1.44931 2.37072 2.88040 3.04245 3.11060 3.83205 3.96755 4.05697 4.21742 4.27538 4.34723 4.38958 4.43963 4.50789 4.54307 4.64221 4.68747 4.75606 4.84939 4.89413 4.92091 4.97329 5.08111 5.10966 5.12836 5.22927 5.27835 5.32064 5.41262 5.49554 5.50533 5.73076 5.85070 6.14212 6.20277 6.25104 6.30262 6.84147 7.36286 8.88893 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.020540 B = 0.008104 C = 0.007636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.836506 B = 3454.329354 C = 3665.879255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C 0.023 3.977 4 H 0.043 0.957 5 C 0.075 3.925 6 O -0.412 6.412 7 C 0.066 3.934 8 C 0.006 3.994 9 N -0.508 5.508 10 C 0.069 3.931 11 H 0.074 0.926 12 C -0.123 4.123 13 C -0.131 4.131 14 C 0.032 3.968 15 C -0.548 4.548 16 H 0.052 0.948 17 C 0.005 3.995 18 N -0.925 5.925 19 Si 0.958 3.042 20 H -0.269 1.269 21 H -0.282 1.282 22 H -0.268 1.268 23 H 0.029 0.971 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.031 0.969 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.012 0.988 40 H -0.019 1.019 41 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -6.068 -10.626 13.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.143 4.143 3 C -0.086 4.086 4 H 0.060 0.940 5 C -0.002 4.002 6 O -0.331 6.331 7 C -0.011 4.011 8 C -0.123 4.123 9 N -0.233 5.233 10 C -0.039 4.039 11 H 0.092 0.908 12 C -0.181 4.181 13 C -0.170 4.170 14 C -0.005 4.005 15 C -0.586 4.586 16 H 0.070 0.930 17 C -0.194 4.194 18 N -0.565 5.565 19 Si 0.782 3.218 20 H -0.194 1.194 21 H -0.207 1.207 22 H -0.193 1.193 23 H 0.048 0.952 24 H 0.087 0.913 25 H 0.091 0.909 26 H 0.103 0.897 27 H 0.074 0.926 28 H 0.090 0.910 29 H 0.113 0.887 30 H 0.091 0.909 31 H 0.122 0.878 32 H 0.049 0.951 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.030 0.970 40 H -0.001 1.001 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.483 -6.103 -11.055 13.767 hybrid contribution -0.514 0.952 1.998 2.272 sum 4.969 -5.151 -9.058 11.544 Atomic orbital electron populations 1.21765 0.95069 1.02213 1.01592 1.21492 0.96069 0.94275 1.02482 1.22714 0.88909 0.98049 0.98889 0.93965 1.22757 0.98711 0.82567 0.96130 1.87942 1.21829 1.28567 1.94731 1.22779 0.80221 1.01570 0.96496 1.22950 1.01059 0.89930 0.98319 1.62666 1.07593 1.14277 1.38733 1.21976 0.98258 0.95758 0.87915 0.90778 1.21648 0.94213 1.00628 1.01617 1.22198 0.98272 0.98636 0.97854 1.19184 0.92273 0.93986 0.95039 1.21695 0.94747 1.31433 1.10767 0.92969 1.25892 0.95139 0.97759 1.00573 1.70087 0.99990 1.45190 1.41202 0.85619 0.77347 0.79104 0.79701 1.19397 1.20738 1.19306 0.95194 0.91253 0.90945 0.89662 0.92607 0.90955 0.88708 0.90870 0.87810 0.95074 0.88609 0.92019 0.91347 0.92597 0.93343 0.92773 0.97028 1.00080 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.47 71.98 0.68 -3.51 16 2 C -0.11 -3.16 5.31 30.60 0.16 -3.00 16 3 C 0.02 0.82 1.74 44.92 0.08 0.90 16 4 H 0.04 1.99 4.44 -2.39 -0.01 1.98 16 5 C 0.08 2.40 5.91 72.01 0.43 2.82 16 6 O -0.41 -14.90 10.83 -148.98 -1.61 -16.51 16 7 C 0.07 1.98 7.01 72.02 0.50 2.48 16 8 C 0.01 0.19 4.21 86.32 0.36 0.55 16 9 N -0.51 -16.91 4.37 -844.87 -3.69 -20.60 16 10 C 0.07 2.34 2.39 44.92 0.11 2.45 16 11 H 0.07 2.62 5.28 -2.39 -0.01 2.61 16 12 C -0.12 -3.23 9.44 71.98 0.68 -2.55 16 13 C -0.13 -5.47 4.10 30.60 0.13 -5.34 16 14 C 0.03 1.68 3.11 29.85 0.09 1.77 16 15 C -0.55 -32.00 9.11 25.60 0.23 -31.77 16 16 H 0.05 2.96 7.74 -2.91 -0.02 2.93 16 17 C 0.00 0.28 5.46 84.65 0.46 0.74 16 18 N -0.92 -57.11 13.29 21.45 0.28 -56.82 16 19 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 20 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 22 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 23 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 24 H 0.07 1.68 6.86 -2.39 -0.02 1.67 16 25 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.06 1.80 5.80 -2.39 -0.01 1.79 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.09 2.90 6.80 -2.39 -0.02 2.89 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.10 2.77 8.14 -2.39 -0.02 2.75 16 32 H 0.03 1.34 4.67 -2.38 -0.01 1.33 16 33 H 0.10 2.80 7.16 -2.39 -0.02 2.78 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.05 1.40 7.30 -2.39 -0.02 1.38 16 37 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 38 H 0.05 2.22 6.31 -2.39 -0.02 2.21 16 39 H 0.01 0.67 4.17 -2.39 -0.01 0.66 16 40 H -0.02 -1.12 8.01 -2.39 -0.02 -1.14 16 41 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -66.30 302.70 1.92 -64.39 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: 0.99 Total: 16.58 kcal Atomic # 6 Polarization: -38.36 SS G_CDS: 3.92 Total: -34.45 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -3.41 Total: -77.42 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -1.61 Total: -16.51 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -66.30 1.92 -64.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499232.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.326 kcal (2) G-P(sol) polarization free energy of solvation -66.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds