Wall clock time and date at job start Sun Mar 29 2020 22:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.46970 * 2 1 4 4 H 1.08999 * 109.54717 * 303.56397 * 3 2 1 5 5 C 1.53094 * 109.50970 * 63.67707 * 3 2 1 6 6 O 1.43022 * 109.26284 * 176.78486 * 5 3 2 7 7 C 1.43016 * 113.73376 * 301.32821 * 6 5 3 8 8 C 1.53098 * 109.26025 * 58.67073 * 7 6 5 9 9 N 1.47010 * 109.25697 * 303.14877 * 8 7 6 10 10 C 1.46901 * 111.00374 * 182.38992 * 9 8 7 11 11 H 1.08997 * 109.47329 * 184.88127 * 10 9 8 12 12 C 1.53000 * 109.47276 * 304.88747 * 10 9 8 13 13 C 1.53004 * 109.46755 * 64.88389 * 10 9 8 14 14 C 1.53001 * 109.47069 * 65.00229 * 13 10 9 15 15 C 1.50700 * 109.47192 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99834 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99980 * 179.72412 * 15 14 13 18 18 N 1.31513 * 119.99888 * 0.27484 * 17 15 14 19 19 Si 1.86803 * 119.99748 * 180.27622 * 17 15 14 20 20 H 1.48490 * 109.47150 * 60.00099 * 19 17 15 21 21 H 1.48506 * 109.46847 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 299.99926 * 19 17 15 23 23 H 1.08997 * 109.47549 * 304.12957 * 1 2 3 24 24 H 1.09002 * 109.47380 * 64.13430 * 1 2 3 25 25 H 1.09000 * 109.46870 * 184.13545 * 1 2 3 26 26 H 1.09001 * 109.47165 * 239.99781 * 2 1 3 27 27 H 1.09004 * 109.47033 * 119.99592 * 2 1 3 28 28 H 1.08996 * 109.51129 * 56.85008 * 5 3 2 29 29 H 1.09003 * 109.54518 * 296.73998 * 5 3 2 30 30 H 1.08997 * 109.50762 * 298.73410 * 7 6 5 31 31 H 1.08998 * 109.50404 * 178.60221 * 7 6 5 32 32 H 1.08999 * 109.50629 * 183.21580 * 8 7 6 33 33 H 1.09004 * 109.50932 * 63.08222 * 8 7 6 34 34 H 1.09001 * 109.47248 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46682 * 299.99956 * 12 10 9 36 36 H 1.09005 * 109.46868 * 59.99572 * 12 10 9 37 37 H 1.09004 * 109.47339 * 305.00437 * 13 10 9 38 38 H 1.08995 * 109.47306 * 184.99919 * 13 10 9 39 39 H 1.09004 * 109.46870 * 59.99922 * 14 13 10 40 40 H 1.09001 * 109.47125 * 300.00309 * 14 13 10 41 41 H 0.96995 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6260 1.9756 -0.8559 5 6 1.6070 2.1378 1.2934 6 8 2.1493 3.4609 1.3221 7 6 3.5768 3.4998 1.2431 8 6 4.0297 2.8183 -0.0508 9 7 3.5077 1.4443 -0.0836 10 6 3.9674 0.7350 -1.2851 11 1 3.4981 -0.2478 -1.3286 12 6 3.5847 1.5385 -2.5295 13 6 5.4878 0.5722 -1.2308 14 6 5.8619 -0.3352 -0.0570 15 6 7.3594 -0.4961 -0.0039 16 1 7.9819 -0.0010 -0.7345 17 6 7.9349 -1.2711 0.9806 18 7 7.1768 -1.8743 1.8699 19 14 9.7916 -1.4642 1.0510 20 1 10.4215 -0.1314 1.2296 21 1 10.1551 -2.3410 2.1932 22 1 10.2742 -2.0744 -0.2140 23 1 -0.3634 0.5766 0.8506 24 1 -0.3634 0.4483 -0.9247 25 1 -0.3633 -1.0250 0.0741 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.9760 1.5746 2.1506 29 1 0.5189 2.1895 1.3331 30 1 4.0030 2.9761 2.0987 31 1 3.9133 4.5365 1.2455 32 1 5.1188 2.7948 -0.0879 33 1 3.6475 3.3733 -0.9076 34 1 3.9262 1.0124 -3.4210 35 1 2.5015 1.6546 -2.5681 36 1 4.0541 2.5214 -2.4859 37 1 5.9533 1.5488 -1.0978 38 1 5.8389 0.1259 -2.1611 39 1 5.3964 -1.3118 -0.1900 40 1 5.5107 0.1110 0.8735 41 1 7.5817 -2.4197 2.5622 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:07 Heat of formation + Delta-G solvation = -57.048471 kcal Electronic energy + Delta-G solvation = -18698.903800 eV Core-core repulsion = 15999.323167 eV Total energy + Delta-G solvation = -2699.580633 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.89837 -36.70981 -34.51283 -33.07458 -31.36176 -29.57732 -28.98538 -26.15281 -25.11269 -24.59964 -21.72044 -21.47677 -20.24159 -18.70876 -16.59442 -16.22084 -15.95981 -15.12195 -14.70779 -14.44176 -14.37173 -14.08886 -13.62356 -13.18502 -13.03310 -12.69641 -12.14991 -12.04403 -11.91586 -11.52860 -11.46837 -11.29158 -11.07139 -10.95784 -10.84567 -10.57094 -10.47116 -10.12508 -9.98858 -9.58200 -9.34270 -9.20090 -8.89987 -8.24786 -7.79619 -5.89854 -3.91448 3.37228 3.41724 3.44030 4.00461 4.12252 4.52605 4.91640 5.03304 5.18392 5.27637 5.34787 5.42701 5.45525 5.48118 5.52956 5.53626 5.64899 5.69624 5.77013 5.87653 5.95310 6.00673 6.08822 6.13776 6.21732 6.27475 6.31167 6.33668 6.52287 6.67556 6.85890 7.26536 7.28516 7.49835 7.53089 7.82983 8.04991 8.20099 8.55374 9.17227 9.71327 11.20985 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.006175 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.255821 B = 4533.672057 C = 4631.093359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.049 3.951 4 H 0.044 0.956 5 C 0.068 3.932 6 O -0.392 6.392 7 C 0.062 3.938 8 C 0.016 3.984 9 N -0.511 5.511 10 C 0.077 3.923 11 H 0.084 0.916 12 C -0.185 4.185 13 C -0.102 4.102 14 C 0.032 3.968 15 C -0.521 4.521 16 H 0.050 0.950 17 C 0.058 3.942 18 N -0.894 5.894 19 Si 0.887 3.113 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 H 0.055 0.945 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.055 0.945 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.009 0.991 40 H 0.030 0.970 41 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 7.529 -4.002 14.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.060 4.060 4 H 0.062 0.938 5 C -0.009 4.009 6 O -0.311 6.311 7 C -0.014 4.014 8 C -0.112 4.112 9 N -0.236 5.236 10 C -0.031 4.031 11 H 0.102 0.898 12 C -0.244 4.244 13 C -0.140 4.140 14 C -0.005 4.005 15 C -0.559 4.559 16 H 0.068 0.932 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.715 3.285 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 H 0.074 0.926 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.112 0.888 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.027 0.973 40 H 0.049 0.951 41 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.882 7.329 -3.408 14.370 hybrid contribution 0.992 -0.011 -0.728 1.230 sum -10.891 7.318 -4.136 13.757 Atomic orbital electron populations 1.21815 0.95931 1.01700 1.01467 1.21597 0.94942 0.95558 1.03719 1.22274 0.89274 0.96713 0.97707 0.93821 1.22752 0.98107 0.83286 0.96742 1.87912 1.21010 1.27436 1.94710 1.22691 0.80714 1.00625 0.97405 1.22813 1.01972 0.89254 0.97155 1.62369 1.07088 1.14488 1.39643 1.21972 0.98444 0.96890 0.85821 0.89800 1.22493 1.00477 1.01356 1.00033 1.21728 0.90636 1.00686 1.00967 1.18976 0.94977 0.93576 0.93014 1.21303 0.92826 1.29282 1.12510 0.93205 1.24989 0.97582 0.95943 0.95802 1.69966 1.34744 1.32247 1.16358 0.86751 0.86428 0.77936 0.77384 1.20392 1.21380 1.20420 0.92639 0.93096 0.92516 0.91185 0.90531 0.92181 0.89013 0.91947 0.88989 0.88750 0.94414 0.92293 0.93487 0.92641 0.93428 0.93305 0.97302 0.95126 0.93171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.74 37.16 0.36 -1.22 16 2 C -0.12 -1.61 5.25 -26.74 -0.14 -1.75 16 3 C 0.05 0.70 1.79 -67.60 -0.12 0.58 16 4 H 0.04 0.63 6.67 -51.93 -0.35 0.28 16 5 C 0.07 0.94 5.94 37.21 0.22 1.16 16 6 O -0.39 -5.95 10.83 -35.23 -0.38 -6.33 16 7 C 0.06 0.91 7.01 37.21 0.26 1.17 16 8 C 0.02 0.25 4.82 -3.71 -0.02 0.23 16 9 N -0.51 -8.56 3.95 -218.41 -0.86 -9.42 16 10 C 0.08 1.31 2.09 -67.71 -0.14 1.17 16 11 H 0.08 1.47 5.75 -51.93 -0.30 1.17 16 12 C -0.18 -2.65 8.45 37.16 0.31 -2.33 16 13 C -0.10 -2.10 4.52 -26.73 -0.12 -2.23 16 14 C 0.03 0.82 4.86 -27.88 -0.14 0.69 16 15 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 19 Si 0.89 21.95 29.54 -169.99 -5.02 16.92 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 H 0.05 0.53 6.41 -51.93 -0.33 0.20 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.97 6.01 -51.93 -0.31 0.66 16 27 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.09 1.06 6.61 -51.93 -0.34 0.72 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.09 1.57 6.23 -51.93 -0.32 1.25 16 33 H 0.04 0.56 6.38 -51.93 -0.33 0.23 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.63 6.69 -51.93 -0.35 0.28 16 36 H 0.05 0.78 6.39 -51.93 -0.33 0.45 16 37 H 0.05 0.97 6.25 -51.93 -0.32 0.64 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.03 0.85 7.75 -51.93 -0.40 0.45 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 308.43 15.07 4.65 4.65 Total: -1.00 -30.53 308.43 -7.85 -38.38 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -7.04 Total: -1.56 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 0.07 Total: -16.17 kcal Atomic # 7 Polarization: -35.76 SS G_CDS: -0.13 Total: -35.89 kcal Atomic # 8 Polarization: -5.95 SS G_CDS: -0.38 Total: -6.33 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.53 -7.85 -38.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.667 kcal (2) G-P(sol) polarization free energy of solvation -30.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds