Wall clock time and date at job start Sun Mar 29 2020 22:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.46970 * 2 1 4 4 H 1.08999 * 109.54717 * 303.56397 * 3 2 1 5 5 C 1.53094 * 109.50970 * 63.67707 * 3 2 1 6 6 O 1.43022 * 109.26284 * 176.78486 * 5 3 2 7 7 C 1.43016 * 113.73376 * 301.32821 * 6 5 3 8 8 C 1.53098 * 109.26025 * 58.67073 * 7 6 5 9 9 N 1.47010 * 109.25697 * 303.14877 * 8 7 6 10 10 C 1.46901 * 111.00374 * 182.38992 * 9 8 7 11 11 H 1.08997 * 109.47329 * 184.88127 * 10 9 8 12 12 C 1.53000 * 109.47276 * 304.88747 * 10 9 8 13 13 C 1.53004 * 109.46755 * 64.88389 * 10 9 8 14 14 C 1.53001 * 109.47069 * 65.00229 * 13 10 9 15 15 C 1.50700 * 109.47192 * 179.97438 * 14 13 10 16 16 H 1.07998 * 119.99834 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99980 * 179.72412 * 15 14 13 18 18 N 1.31513 * 119.99888 * 0.27484 * 17 15 14 19 19 Si 1.86803 * 119.99748 * 180.27622 * 17 15 14 20 20 H 1.48490 * 109.47150 * 60.00099 * 19 17 15 21 21 H 1.48506 * 109.46847 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47099 * 299.99926 * 19 17 15 23 23 H 1.08997 * 109.47549 * 304.12957 * 1 2 3 24 24 H 1.09002 * 109.47380 * 64.13430 * 1 2 3 25 25 H 1.09000 * 109.46870 * 184.13545 * 1 2 3 26 26 H 1.09001 * 109.47165 * 239.99781 * 2 1 3 27 27 H 1.09004 * 109.47033 * 119.99592 * 2 1 3 28 28 H 1.08996 * 109.51129 * 56.85008 * 5 3 2 29 29 H 1.09003 * 109.54518 * 296.73998 * 5 3 2 30 30 H 1.08997 * 109.50762 * 298.73410 * 7 6 5 31 31 H 1.08998 * 109.50404 * 178.60221 * 7 6 5 32 32 H 1.08999 * 109.50629 * 183.21580 * 8 7 6 33 33 H 1.09004 * 109.50932 * 63.08222 * 8 7 6 34 34 H 1.09001 * 109.47248 * 179.97438 * 12 10 9 35 35 H 1.09004 * 109.46682 * 299.99956 * 12 10 9 36 36 H 1.09005 * 109.46868 * 59.99572 * 12 10 9 37 37 H 1.09004 * 109.47339 * 305.00437 * 13 10 9 38 38 H 1.08995 * 109.47306 * 184.99919 * 13 10 9 39 39 H 1.09004 * 109.46870 * 59.99922 * 14 13 10 40 40 H 1.09001 * 109.47125 * 300.00309 * 14 13 10 41 41 H 0.96995 * 119.99606 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6260 1.9756 -0.8559 5 6 1.6070 2.1378 1.2934 6 8 2.1493 3.4609 1.3221 7 6 3.5768 3.4998 1.2431 8 6 4.0297 2.8183 -0.0508 9 7 3.5077 1.4443 -0.0836 10 6 3.9674 0.7350 -1.2851 11 1 3.4981 -0.2478 -1.3286 12 6 3.5847 1.5385 -2.5295 13 6 5.4878 0.5722 -1.2308 14 6 5.8619 -0.3352 -0.0570 15 6 7.3594 -0.4961 -0.0039 16 1 7.9819 -0.0010 -0.7345 17 6 7.9349 -1.2711 0.9806 18 7 7.1768 -1.8743 1.8699 19 14 9.7916 -1.4642 1.0510 20 1 10.4215 -0.1314 1.2296 21 1 10.1551 -2.3410 2.1932 22 1 10.2742 -2.0744 -0.2140 23 1 -0.3634 0.5766 0.8506 24 1 -0.3634 0.4483 -0.9247 25 1 -0.3633 -1.0250 0.0741 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8901 28 1 1.9760 1.5746 2.1506 29 1 0.5189 2.1895 1.3331 30 1 4.0030 2.9761 2.0987 31 1 3.9133 4.5365 1.2455 32 1 5.1188 2.7948 -0.0879 33 1 3.6475 3.3733 -0.9076 34 1 3.9262 1.0124 -3.4210 35 1 2.5015 1.6546 -2.5681 36 1 4.0541 2.5214 -2.4859 37 1 5.9533 1.5488 -1.0978 38 1 5.8389 0.1259 -2.1611 39 1 5.3964 -1.3118 -0.1900 40 1 5.5107 0.1110 0.8735 41 1 7.5817 -2.4197 2.5622 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499233.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:06 Heat of formation + Delta-G solvation = -76.514395 kcal Electronic energy + Delta-G solvation = -18699.747906 eV Core-core repulsion = 15999.323167 eV Total energy + Delta-G solvation = -2700.424739 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.12198 -38.01452 -35.84575 -34.95465 -32.97395 -31.02382 -30.28209 -27.38947 -26.94449 -25.74980 -23.39722 -22.69141 -21.75034 -20.01077 -18.37774 -17.81453 -17.24019 -16.53460 -16.29313 -15.90133 -15.55620 -15.38274 -14.88178 -14.50982 -14.37291 -14.20154 -13.76324 -13.38017 -13.20427 -13.03707 -12.90714 -12.76184 -12.58016 -12.36489 -12.28363 -12.05910 -11.77265 -11.60204 -11.44366 -11.20500 -11.16246 -10.92090 -10.50225 -10.48527 -9.05973 -8.13772 -6.24433 1.39599 1.42529 1.50266 2.43277 2.82489 2.96269 3.18537 3.77031 3.91432 3.96575 4.12563 4.21354 4.24771 4.30726 4.39705 4.44272 4.51253 4.58911 4.67111 4.75305 4.78957 4.81489 4.86824 4.94700 4.99085 5.06838 5.10254 5.17964 5.29576 5.31254 5.39661 5.48029 5.58559 5.87854 6.00972 6.11053 6.24043 6.29061 6.34627 6.95050 7.43765 8.97125 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025747 B = 0.006175 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.255821 B = 4533.672057 C = 4631.093359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C 0.053 3.947 4 H 0.054 0.946 5 C 0.067 3.933 6 O -0.397 6.397 7 C 0.064 3.936 8 C 0.019 3.981 9 N -0.538 5.538 10 C 0.082 3.918 11 H 0.075 0.925 12 C -0.173 4.173 13 C -0.091 4.091 14 C 0.044 3.956 15 C -0.544 4.544 16 H 0.055 0.945 17 C 0.001 3.999 18 N -0.931 5.931 19 Si 0.959 3.041 20 H -0.268 1.268 21 H -0.284 1.284 22 H -0.268 1.268 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.044 0.956 29 H 0.120 0.880 30 H 0.043 0.957 31 H 0.118 0.882 32 H 0.077 0.923 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.050 0.950 38 H 0.051 0.949 39 H -0.023 1.023 40 H 0.001 0.999 41 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.317 8.613 -5.043 15.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.055 4.055 4 H 0.072 0.928 5 C -0.009 4.009 6 O -0.316 6.316 7 C -0.012 4.012 8 C -0.109 4.109 9 N -0.263 5.263 10 C -0.026 4.026 11 H 0.093 0.907 12 C -0.232 4.232 13 C -0.129 4.129 14 C 0.007 3.993 15 C -0.582 4.582 16 H 0.073 0.927 17 C -0.197 4.197 18 N -0.571 5.571 19 Si 0.784 3.216 20 H -0.193 1.193 21 H -0.209 1.209 22 H -0.193 1.193 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.069 0.931 39 H -0.004 1.004 40 H 0.020 0.980 41 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.238 8.423 -4.462 15.513 hybrid contribution 1.085 -0.377 -0.367 1.206 sum -11.153 8.046 -4.830 14.576 Atomic orbital electron populations 1.21769 0.93264 1.02574 1.02590 1.21563 0.97222 0.94720 1.02079 1.22315 0.87670 0.97283 0.98257 0.92836 1.22870 0.99600 0.82632 0.95833 1.87905 1.21037 1.27995 1.94629 1.22728 0.80605 1.01805 0.96099 1.22781 1.00981 0.88947 0.98221 1.62303 1.08944 1.15292 1.39796 1.21762 0.95655 0.97423 0.87720 0.90726 1.22353 1.01448 1.00929 0.98468 1.21537 0.93631 0.99287 0.98442 1.18761 0.93694 0.92833 0.94023 1.21767 0.94259 1.29416 1.12766 0.92701 1.25927 1.02990 0.95463 0.95297 1.70113 1.37063 1.32929 1.17041 0.85595 0.79920 0.78318 0.77754 1.19291 1.20945 1.19299 0.91567 0.91826 0.91859 0.92032 0.93015 0.93758 0.86203 0.93883 0.86376 0.90420 0.93000 0.91429 0.91996 0.92228 0.93174 0.93057 1.00415 0.98016 0.93053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.74 71.98 0.70 -2.03 16 2 C -0.12 -3.11 5.25 30.59 0.16 -2.95 16 3 C 0.05 1.47 1.79 44.92 0.08 1.55 16 4 H 0.05 1.40 6.67 -2.39 -0.02 1.38 16 5 C 0.07 1.78 5.94 72.01 0.43 2.21 16 6 O -0.40 -11.46 10.83 -148.98 -1.61 -13.07 16 7 C 0.06 1.83 7.01 72.02 0.50 2.33 16 8 C 0.02 0.57 4.82 86.32 0.42 0.98 16 9 N -0.54 -18.04 3.95 -844.92 -3.34 -21.38 16 10 C 0.08 2.80 2.09 44.92 0.09 2.89 16 11 H 0.07 2.66 5.75 -2.39 -0.01 2.65 16 12 C -0.17 -4.60 8.45 71.98 0.61 -3.99 16 13 C -0.09 -3.79 4.52 30.60 0.14 -3.65 16 14 C 0.04 2.38 4.86 29.85 0.15 2.52 16 15 C -0.54 -31.71 9.11 25.60 0.23 -31.47 16 16 H 0.05 3.07 7.74 -2.91 -0.02 3.04 16 17 C 0.00 0.05 5.46 84.66 0.46 0.51 16 18 N -0.93 -58.08 13.29 21.45 0.28 -57.80 16 19 Si 0.96 45.18 29.54 68.60 2.03 47.21 16 20 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 23 H 0.07 1.11 6.41 -2.39 -0.02 1.09 16 24 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.71 6.01 -2.39 -0.01 1.70 16 27 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 28 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.12 2.47 6.61 -2.39 -0.02 2.46 16 30 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 32 H 0.08 2.60 6.23 -2.39 -0.01 2.59 16 33 H 0.05 1.43 6.38 -2.38 -0.02 1.42 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.06 1.47 6.69 -2.39 -0.02 1.46 16 36 H 0.06 1.54 6.39 -2.38 -0.02 1.52 16 37 H 0.05 2.04 6.25 -2.39 -0.01 2.03 16 38 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 39 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 40 H 0.00 0.08 7.75 -2.39 -0.02 0.07 16 41 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -66.29 308.43 2.31 -63.97 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: 0.98 Total: 12.17 kcal Atomic # 6 Polarization: -35.08 SS G_CDS: 3.97 Total: -31.11 kcal Atomic # 7 Polarization: -76.12 SS G_CDS: -3.05 Total: -79.17 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.61 Total: -13.07 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.29 2.31 -63.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499233.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.542 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds