Wall clock time and date at job start Sun Mar 29 2020 22:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46937 * 2 1 4 4 H 1.09001 * 109.54336 * 55.73657 * 3 2 1 5 5 C 1.53098 * 109.51005 * 295.62554 * 3 2 1 6 6 O 1.43020 * 109.25668 * 183.21846 * 5 3 2 7 7 C 1.43010 * 113.73924 * 58.66887 * 6 5 3 8 8 C 1.53099 * 109.26187 * 301.32693 * 7 6 5 9 9 N 1.47016 * 109.25465 * 56.85078 * 8 7 6 10 10 C 1.46898 * 111.00014 * 177.60856 * 9 8 7 11 11 H 1.08994 * 109.47537 * 181.25926 * 10 9 8 12 12 C 1.53003 * 109.46937 * 61.26120 * 10 9 8 13 13 C 1.52998 * 109.47181 * 301.26435 * 10 9 8 14 14 C 1.53002 * 109.46681 * 296.54791 * 13 10 9 15 15 C 1.50707 * 109.47031 * 175.27040 * 14 13 10 16 16 H 1.07995 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99962 * 359.72618 * 17 15 14 19 19 Si 1.86794 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47400 * 179.72497 * 19 17 15 21 21 H 1.48501 * 109.47359 * 299.72585 * 19 17 15 22 22 H 1.48501 * 109.47071 * 59.72421 * 19 17 15 23 23 H 1.09004 * 109.46967 * 185.61181 * 1 2 3 24 24 H 1.09001 * 109.47240 * 305.60606 * 1 2 3 25 25 H 1.08993 * 109.47549 * 65.61364 * 1 2 3 26 26 H 1.09002 * 109.46672 * 240.00193 * 2 1 3 27 27 H 1.09002 * 109.47278 * 120.00411 * 2 1 3 28 28 H 1.08996 * 109.50864 * 63.28260 * 5 3 2 29 29 H 1.09001 * 109.53991 * 303.16855 * 5 3 2 30 30 H 1.09003 * 109.50390 * 181.38970 * 7 6 5 31 31 H 1.09004 * 109.53997 * 61.28935 * 7 6 5 32 32 H 1.09004 * 109.50369 * 296.91964 * 8 7 6 33 33 H 1.09001 * 109.54355 * 176.80387 * 8 7 6 34 34 H 1.08992 * 109.47596 * 64.71158 * 12 10 9 35 35 H 1.09005 * 109.47152 * 184.71387 * 12 10 9 36 36 H 1.09000 * 109.47074 * 304.71200 * 12 10 9 37 37 H 1.09002 * 109.47335 * 176.55160 * 13 10 9 38 38 H 1.09005 * 109.47426 * 56.54526 * 13 10 9 39 39 H 1.09006 * 109.47244 * 55.27400 * 14 13 10 40 40 H 1.08993 * 109.47421 * 295.27179 * 14 13 10 41 41 H 0.96998 * 120.00086 * 0.27184 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6162 1.9790 0.8489 5 6 1.6219 2.1325 -1.3011 6 8 2.1647 3.4555 -1.3289 7 6 3.5911 3.4947 -1.2336 8 6 4.0291 2.8184 0.0683 9 7 3.5067 1.4446 0.1005 10 6 3.9525 0.7401 1.3100 11 1 3.5705 -0.2806 1.2977 12 6 3.4239 1.4676 2.5479 13 6 5.4817 0.7119 1.3494 14 6 6.0078 -0.0894 0.1569 15 6 7.5130 -0.0202 0.1298 16 1 8.0414 0.5398 0.8871 17 6 8.2153 -0.6708 -0.8624 18 7 7.5720 -1.3563 -1.7820 19 14 10.0810 -0.5843 -0.8963 20 1 10.5919 -1.3672 -2.0501 21 1 10.5086 0.8314 -1.0305 22 1 10.6257 -1.1485 0.3647 23 1 -0.3633 -1.0228 0.1005 24 1 -0.3634 0.5983 0.8355 25 1 -0.3634 0.4243 -0.9359 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5344 2.1841 -1.3527 29 1 2.0002 1.5661 -2.1521 30 1 3.9276 4.5314 -1.2363 31 1 4.0277 2.9681 -2.0822 32 1 3.6370 3.3770 0.9183 33 1 5.1176 2.7952 0.1188 34 1 2.3353 1.4151 2.5631 35 1 3.8229 0.9947 3.4453 36 1 3.7369 2.5112 2.5174 37 1 5.8128 0.2436 2.2763 38 1 5.8654 1.7310 1.2999 39 1 5.6082 0.3291 -0.7669 40 1 5.6935 -1.1289 0.2506 41 1 6.6032 -1.4009 -1.7646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172499234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:09 Heat of formation + Delta-G solvation = -61.382680 kcal Electronic energy + Delta-G solvation = -18768.550805 eV Core-core repulsion = 16068.782227 eV Total energy + Delta-G solvation = -2699.768578 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.98558 -36.80537 -34.64483 -33.31045 -31.35851 -29.62458 -28.90323 -26.18323 -24.92624 -24.40648 -21.84329 -21.60609 -20.49918 -18.77021 -16.66516 -16.53236 -16.14652 -15.19657 -14.80852 -14.48743 -14.16892 -13.79218 -13.64326 -13.37640 -13.15448 -12.78001 -12.33704 -12.07769 -12.01421 -11.82773 -11.58728 -11.23581 -11.06598 -11.01329 -10.74908 -10.65526 -10.21511 -10.12163 -10.03627 -9.72481 -9.56556 -9.38321 -8.39574 -8.22395 -7.88663 -6.25258 -3.93017 3.47672 3.49774 3.68468 3.95135 4.06036 4.61666 4.83974 4.94699 5.12019 5.21073 5.28187 5.36063 5.42313 5.44631 5.47750 5.51965 5.57601 5.62182 5.71652 5.80551 5.89144 5.94547 6.01465 6.08108 6.13964 6.18670 6.21576 6.23890 6.41750 6.55356 6.73589 7.09493 7.23252 7.40905 7.42837 7.62831 7.81409 8.35412 8.59300 9.01170 9.79018 11.15625 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.006259 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.601860 B = 4472.692571 C = 4622.571475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.048 3.952 4 H 0.046 0.954 5 C 0.069 3.931 6 O -0.391 6.391 7 C 0.063 3.937 8 C 0.015 3.985 9 N -0.513 5.513 10 C 0.077 3.923 11 H 0.082 0.918 12 C -0.185 4.185 13 C -0.098 4.098 14 C 0.017 3.983 15 C -0.602 4.602 16 H 0.043 0.957 17 C 0.014 3.986 18 N -0.915 5.915 19 Si 1.066 2.934 20 H -0.283 1.283 21 H -0.289 1.289 22 H -0.290 1.290 23 H 0.056 0.944 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.059 0.941 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.098 0.902 34 H 0.048 0.952 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.024 0.976 40 H -0.001 1.001 41 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.860 6.541 4.189 15.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.061 4.061 4 H 0.064 0.936 5 C -0.008 4.008 6 O -0.310 6.310 7 C -0.014 4.014 8 C -0.113 4.113 9 N -0.238 5.238 10 C -0.031 4.031 11 H 0.100 0.900 12 C -0.244 4.244 13 C -0.135 4.135 14 C -0.020 4.020 15 C -0.640 4.640 16 H 0.062 0.938 17 C -0.189 4.189 18 N -0.552 5.552 19 Si 0.894 3.106 20 H -0.209 1.209 21 H -0.216 1.216 22 H -0.216 1.216 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.017 0.983 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.435 5.949 2.919 13.217 hybrid contribution -1.440 0.696 1.755 2.375 sum -12.876 6.645 4.674 15.225 Atomic orbital electron populations 1.21801 0.95799 1.01671 1.01592 1.21582 0.95097 0.95602 1.03486 1.22318 0.89245 0.96674 0.97855 0.93595 1.22730 0.98188 0.83378 0.96526 1.87915 1.21149 1.27368 1.94564 1.22690 0.80678 1.00774 0.97240 1.22842 1.02281 0.89054 0.97148 1.62377 1.07524 1.14948 1.38933 1.21935 0.97759 0.97418 0.85988 0.89978 1.22485 1.00483 1.01435 0.99989 1.21640 0.90548 1.00776 1.00581 1.19121 0.95619 0.93879 0.93403 1.22126 0.92197 1.35433 1.14289 0.93844 1.25759 1.06642 0.93600 0.92941 1.70752 1.10720 1.39266 1.34459 0.83598 0.74834 0.76137 0.75986 1.20863 1.21606 1.21638 0.92531 0.92976 0.92639 0.90754 0.91277 0.89006 0.92306 0.88858 0.91999 0.94428 0.88406 0.93283 0.92227 0.92663 0.93195 0.93078 0.95794 0.98252 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.51 37.16 0.35 -1.16 16 2 C -0.12 -1.54 5.24 -26.73 -0.14 -1.68 16 3 C 0.05 0.68 1.65 -67.60 -0.11 0.56 16 4 H 0.05 0.65 6.60 -51.93 -0.34 0.31 16 5 C 0.07 0.94 5.95 37.21 0.22 1.16 16 6 O -0.39 -5.97 10.83 -35.23 -0.38 -6.35 16 7 C 0.06 0.94 7.01 37.21 0.26 1.20 16 8 C 0.01 0.23 4.88 -3.71 -0.02 0.22 16 9 N -0.51 -8.56 3.85 -218.41 -0.84 -9.40 16 10 C 0.08 1.31 2.03 -67.71 -0.14 1.17 16 11 H 0.08 1.43 6.04 -51.93 -0.31 1.12 16 12 C -0.19 -2.65 8.49 37.16 0.32 -2.33 16 13 C -0.10 -2.02 4.35 -26.73 -0.12 -2.14 16 14 C 0.02 0.43 4.22 -27.88 -0.12 0.32 16 15 C -0.60 -17.43 9.11 -34.44 -0.31 -17.75 16 16 H 0.04 1.24 7.74 -52.49 -0.41 0.83 16 17 C 0.01 0.42 5.46 -17.82 -0.10 0.32 16 18 N -0.92 -28.62 13.65 55.43 0.76 -27.86 16 19 Si 1.07 25.81 29.90 -169.99 -5.08 20.73 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.51 6.91 -51.93 -0.36 0.15 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.92 6.09 -51.93 -0.32 0.61 16 28 H 0.09 1.04 6.85 -51.93 -0.36 0.69 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.04 0.57 6.37 -51.93 -0.33 0.24 16 33 H 0.10 1.72 6.08 -51.93 -0.32 1.41 16 34 H 0.05 0.64 6.76 -51.93 -0.35 0.29 16 35 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.79 6.25 -51.93 -0.32 0.46 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.05 1.05 6.15 -51.93 -0.32 0.73 16 39 H 0.02 0.65 7.44 -51.93 -0.39 0.26 16 40 H 0.00 -0.02 8.00 -51.93 -0.42 -0.44 16 41 H 0.27 8.44 7.22 -40.82 -0.29 8.15 16 LS Contribution 307.11 15.07 4.63 4.63 Total: -1.00 -31.23 307.11 -7.83 -39.07 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -7.01 Total: -0.70 kcal Atomic # 6 Polarization: -20.21 SS G_CDS: 0.10 Total: -20.11 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: -0.08 Total: -37.26 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.38 Total: -6.35 kcal Atomic # 14 Polarization: 25.81 SS G_CDS: -5.08 Total: 20.73 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.23 -7.83 -39.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.316 kcal (2) G-P(sol) polarization free energy of solvation -31.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds