Wall clock time and date at job start Sun Mar 29 2020 22:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.46937 * 2 1 4 4 H 1.09001 * 109.54336 * 55.73657 * 3 2 1 5 5 C 1.53098 * 109.51005 * 295.62554 * 3 2 1 6 6 O 1.43020 * 109.25668 * 183.21846 * 5 3 2 7 7 C 1.43010 * 113.73924 * 58.66887 * 6 5 3 8 8 C 1.53099 * 109.26187 * 301.32693 * 7 6 5 9 9 N 1.47016 * 109.25465 * 56.85078 * 8 7 6 10 10 C 1.46898 * 111.00014 * 177.60856 * 9 8 7 11 11 H 1.08994 * 109.47537 * 181.25926 * 10 9 8 12 12 C 1.53003 * 109.46937 * 61.26120 * 10 9 8 13 13 C 1.52998 * 109.47181 * 301.26435 * 10 9 8 14 14 C 1.53002 * 109.46681 * 296.54791 * 13 10 9 15 15 C 1.50707 * 109.47031 * 175.27040 * 14 13 10 16 16 H 1.07995 * 119.99635 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99989 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99962 * 359.72618 * 17 15 14 19 19 Si 1.86794 * 119.99966 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47400 * 179.72497 * 19 17 15 21 21 H 1.48501 * 109.47359 * 299.72585 * 19 17 15 22 22 H 1.48501 * 109.47071 * 59.72421 * 19 17 15 23 23 H 1.09004 * 109.46967 * 185.61181 * 1 2 3 24 24 H 1.09001 * 109.47240 * 305.60606 * 1 2 3 25 25 H 1.08993 * 109.47549 * 65.61364 * 1 2 3 26 26 H 1.09002 * 109.46672 * 240.00193 * 2 1 3 27 27 H 1.09002 * 109.47278 * 120.00411 * 2 1 3 28 28 H 1.08996 * 109.50864 * 63.28260 * 5 3 2 29 29 H 1.09001 * 109.53991 * 303.16855 * 5 3 2 30 30 H 1.09003 * 109.50390 * 181.38970 * 7 6 5 31 31 H 1.09004 * 109.53997 * 61.28935 * 7 6 5 32 32 H 1.09004 * 109.50369 * 296.91964 * 8 7 6 33 33 H 1.09001 * 109.54355 * 176.80387 * 8 7 6 34 34 H 1.08992 * 109.47596 * 64.71158 * 12 10 9 35 35 H 1.09005 * 109.47152 * 184.71387 * 12 10 9 36 36 H 1.09000 * 109.47074 * 304.71200 * 12 10 9 37 37 H 1.09002 * 109.47335 * 176.55160 * 13 10 9 38 38 H 1.09005 * 109.47426 * 56.54526 * 13 10 9 39 39 H 1.09006 * 109.47244 * 55.27400 * 14 13 10 40 40 H 1.08993 * 109.47421 * 295.27179 * 14 13 10 41 41 H 0.96998 * 120.00086 * 0.27184 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6162 1.9790 0.8489 5 6 1.6219 2.1325 -1.3011 6 8 2.1647 3.4555 -1.3289 7 6 3.5911 3.4947 -1.2336 8 6 4.0291 2.8184 0.0683 9 7 3.5067 1.4446 0.1005 10 6 3.9525 0.7401 1.3100 11 1 3.5705 -0.2806 1.2977 12 6 3.4239 1.4676 2.5479 13 6 5.4817 0.7119 1.3494 14 6 6.0078 -0.0894 0.1569 15 6 7.5130 -0.0202 0.1298 16 1 8.0414 0.5398 0.8871 17 6 8.2153 -0.6708 -0.8624 18 7 7.5720 -1.3563 -1.7820 19 14 10.0810 -0.5843 -0.8963 20 1 10.5919 -1.3672 -2.0501 21 1 10.5086 0.8314 -1.0305 22 1 10.6257 -1.1485 0.3647 23 1 -0.3633 -1.0228 0.1005 24 1 -0.3634 0.5983 0.8355 25 1 -0.3634 0.4243 -0.9359 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 0.5344 2.1841 -1.3527 29 1 2.0002 1.5661 -2.1521 30 1 3.9276 4.5314 -1.2363 31 1 4.0277 2.9681 -2.0822 32 1 3.6370 3.3770 0.9183 33 1 5.1176 2.7952 0.1188 34 1 2.3353 1.4151 2.5631 35 1 3.8229 0.9947 3.4453 36 1 3.7369 2.5112 2.5174 37 1 5.8128 0.2436 2.2763 38 1 5.8654 1.7310 1.2999 39 1 5.6082 0.3291 -0.7669 40 1 5.6935 -1.1289 0.2506 41 1 6.6032 -1.4009 -1.7646 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172499234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:55:08 Heat of formation + Delta-G solvation = -81.412807 kcal Electronic energy + Delta-G solvation = -18769.419376 eV Core-core repulsion = 16068.782227 eV Total energy + Delta-G solvation = -2700.637150 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.21649 -38.12833 -36.07558 -35.11038 -32.91564 -31.01374 -30.26760 -27.38772 -26.65305 -25.74277 -23.67505 -22.78546 -21.93441 -20.05726 -18.80438 -17.86969 -17.35818 -16.43605 -16.03082 -15.66754 -15.64777 -15.45841 -15.16357 -14.82102 -14.47011 -14.15493 -13.90507 -13.69057 -13.16858 -13.07139 -12.82432 -12.64456 -12.60866 -12.36307 -12.12774 -11.97395 -11.82690 -11.69701 -11.57327 -11.38122 -11.24311 -10.61884 -10.51128 -10.48644 -9.15589 -8.63455 -6.32852 1.51567 1.60486 1.79559 2.58746 2.75302 2.90450 3.21108 3.70768 3.84429 3.88316 4.04509 4.13407 4.17573 4.24946 4.30824 4.37095 4.44375 4.53467 4.59159 4.65825 4.69733 4.76009 4.80349 4.86433 4.87313 4.97464 5.03205 5.11254 5.17165 5.22596 5.29421 5.40219 5.50761 5.66254 6.03857 6.08393 6.13849 6.20401 6.28570 6.65427 7.49312 8.76934 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.006259 C = 0.006056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.601860 B = 4472.692571 C = 4622.571475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.117 4.117 3 C 0.052 3.948 4 H 0.055 0.945 5 C 0.067 3.933 6 O -0.396 6.396 7 C 0.066 3.934 8 C 0.018 3.982 9 N -0.538 5.538 10 C 0.084 3.916 11 H 0.075 0.925 12 C -0.174 4.174 13 C -0.087 4.087 14 C 0.026 3.974 15 C -0.619 4.619 16 H 0.045 0.955 17 C -0.040 4.040 18 N -0.939 5.939 19 Si 1.115 2.885 20 H -0.284 1.284 21 H -0.269 1.269 22 H -0.270 1.270 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.121 0.879 29 H 0.045 0.955 30 H 0.118 0.882 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.002 0.998 40 H -0.027 1.027 41 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 7.637 5.281 16.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.155 4.155 3 C -0.057 4.057 4 H 0.073 0.927 5 C -0.010 4.010 6 O -0.315 6.315 7 C -0.011 4.011 8 C -0.110 4.110 9 N -0.263 5.263 10 C -0.024 4.024 11 H 0.093 0.907 12 C -0.233 4.233 13 C -0.125 4.125 14 C -0.011 4.011 15 C -0.657 4.657 16 H 0.064 0.936 17 C -0.237 4.237 18 N -0.577 5.577 19 Si 0.937 3.063 20 H -0.210 1.210 21 H -0.194 1.194 22 H -0.195 1.195 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.136 0.864 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.021 0.979 40 H -0.009 1.009 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.120 7.056 4.029 14.592 hybrid contribution -1.263 0.334 1.396 1.912 sum -13.383 7.389 5.425 16.222 Atomic orbital electron populations 1.21758 0.93204 1.02618 1.02602 1.21555 0.97300 0.94533 1.02140 1.22376 0.87458 0.97502 0.98333 0.92693 1.22874 0.99706 0.82631 0.95748 1.87909 1.20981 1.28114 1.94486 1.22699 0.80723 1.01816 0.95864 1.22774 1.00914 0.89037 0.98256 1.62324 1.09533 1.15454 1.39027 1.21727 0.94961 0.97868 0.87887 0.90707 1.22351 1.01426 1.01030 0.98449 1.21471 0.93485 0.99588 0.97971 1.18956 0.94389 0.92946 0.94808 1.22584 0.93896 1.35023 1.14185 0.93626 1.27378 1.11320 0.92693 0.92350 1.70897 1.09886 1.41079 1.35843 0.82966 0.69286 0.77341 0.76734 1.20967 1.19443 1.19521 0.91724 0.91856 0.91648 0.92777 0.92012 0.86131 0.93676 0.86450 0.93956 0.93085 0.90684 0.91586 0.91425 0.92419 0.93126 0.93028 0.97945 1.00872 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 9.51 71.98 0.68 -1.87 16 2 C -0.12 -2.92 5.24 30.59 0.16 -2.76 16 3 C 0.05 1.39 1.65 44.92 0.07 1.46 16 4 H 0.06 1.41 6.60 -2.39 -0.02 1.39 16 5 C 0.07 1.74 5.95 72.01 0.43 2.17 16 6 O -0.40 -11.47 10.83 -148.98 -1.61 -13.08 16 7 C 0.07 1.92 7.01 72.02 0.50 2.42 16 8 C 0.02 0.57 4.88 86.31 0.42 0.99 16 9 N -0.54 -17.90 3.85 -844.92 -3.26 -21.16 16 10 C 0.08 2.82 2.03 44.92 0.09 2.91 16 11 H 0.07 2.63 6.04 -2.39 -0.01 2.61 16 12 C -0.17 -4.60 8.49 71.98 0.61 -3.99 16 13 C -0.09 -3.65 4.35 30.59 0.13 -3.52 16 14 C 0.03 1.40 4.22 29.85 0.13 1.52 16 15 C -0.62 -36.42 9.11 25.60 0.23 -36.18 16 16 H 0.05 2.61 7.74 -2.91 -0.02 2.58 16 17 C -0.04 -2.41 5.46 84.66 0.46 -1.95 16 18 N -0.94 -60.21 13.65 21.45 0.29 -59.91 16 19 Si 1.12 51.59 29.90 68.60 2.05 53.65 16 20 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 22 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 23 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.06 1.03 6.91 -2.39 -0.02 1.02 16 26 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.61 6.09 -2.39 -0.01 1.60 16 28 H 0.12 2.42 6.85 -2.39 -0.02 2.40 16 29 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.05 1.46 6.37 -2.38 -0.02 1.44 16 33 H 0.07 2.68 6.08 -2.39 -0.01 2.66 16 34 H 0.07 1.54 6.76 -2.39 -0.02 1.52 16 35 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 36 H 0.06 1.51 6.25 -2.39 -0.01 1.49 16 37 H 0.05 2.07 8.14 -2.39 -0.02 2.06 16 38 H 0.05 2.14 6.15 -2.38 -0.01 2.12 16 39 H 0.00 0.13 7.44 -2.38 -0.02 0.11 16 40 H -0.03 -1.57 8.00 -2.39 -0.02 -1.59 16 41 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 Total: -1.00 -67.88 307.11 2.49 -65.38 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.08 Total: 13.91 kcal Atomic # 6 Polarization: -42.72 SS G_CDS: 3.93 Total: -38.79 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -2.96 Total: -81.07 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: -1.61 Total: -13.08 kcal Atomic # 14 Polarization: 51.59 SS G_CDS: 2.05 Total: 53.65 kcal Total: -67.88 2.49 -65.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172499234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.028 kcal (2) G-P(sol) polarization free energy of solvation -67.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds