Wall clock time and date at job start Sun Mar 29 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 O 1.42903 * 109.47178 * 240.00579 * 2 1 3 5 5 C 1.52996 * 109.47491 * 120.00067 * 2 1 3 6 6 N 1.46896 * 109.47200 * 184.99878 * 5 2 1 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 H 1.09002 * 109.46838 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47734 * 59.99463 * 1 2 3 23 23 H 1.09002 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47335 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47161 * 300.00040 * 3 2 1 26 26 H 1.09000 * 109.46915 * 59.99978 * 3 2 1 27 27 H 0.96704 * 113.99339 * 299.99967 * 4 2 1 28 28 H 1.08995 * 109.46990 * 64.99995 * 5 2 1 29 29 H 1.09002 * 109.47484 * 305.00069 * 5 2 1 30 30 H 1.00896 * 111.00418 * 303.95553 * 6 5 2 31 31 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 32 32 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 33 33 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 34 34 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 35 35 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 39 39 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 40 40 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 41 41 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7212 1.2492 6 7 3.5040 -0.6176 1.3110 7 6 4.0305 -1.2998 2.5007 8 6 5.3789 -0.6875 2.8851 9 6 5.9273 -1.3986 4.1238 10 6 6.1114 -2.8863 3.8182 11 6 7.0805 -3.0484 2.6756 12 1 7.5208 -2.1773 2.2133 13 6 7.4043 -4.3088 2.2197 14 7 6.8715 -5.3697 2.7856 15 14 8.6062 -4.5097 0.8039 16 1 9.9872 -4.6190 1.3387 17 1 8.2718 -5.7392 0.0414 18 1 8.5150 -3.3303 -0.0939 19 6 4.7629 -3.4987 3.4339 20 6 4.2142 -2.7878 2.1958 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.7209 -1.5951 -1.2330 28 1 1.7517 -1.7714 1.2055 29 1 1.6055 -0.2618 2.1370 30 1 3.9280 -0.9785 0.4696 31 1 3.3293 -1.1822 3.3269 32 1 5.2478 0.3725 3.1023 33 1 6.0800 -0.8051 2.0588 34 1 5.2263 -1.2813 4.9501 35 1 6.8882 -0.9626 4.3973 36 1 6.5017 -3.3930 4.7008 37 1 7.0990 -6.2563 2.4646 38 1 4.8939 -4.5587 3.2167 39 1 4.0619 -3.3814 4.2603 40 1 3.2536 -3.2240 1.9219 41 1 4.9155 -2.9053 1.3695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:05 Heat of formation + Delta-G solvation = -80.934542 kcal Electronic energy + Delta-G solvation = -18526.302646 eV Core-core repulsion = 15825.686235 eV Total energy + Delta-G solvation = -2700.616411 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.86308 -37.61435 -34.34290 -32.46375 -31.56482 -29.48670 -28.25943 -27.30062 -25.13794 -23.88644 -21.41613 -20.60179 -20.26389 -18.70200 -16.68107 -15.77902 -15.29518 -15.21559 -14.62596 -14.20801 -14.05922 -13.55404 -13.07678 -12.72130 -12.64675 -12.37298 -12.12943 -11.97770 -11.64133 -11.61503 -11.32456 -11.22884 -10.95837 -10.85384 -10.65961 -10.54514 -10.27622 -10.05280 -9.87960 -9.62452 -9.10895 -8.94261 -8.65130 -8.26902 -7.75978 -5.93278 -3.97135 3.32432 3.39645 3.43203 4.17532 4.47651 4.54745 4.89052 4.97616 5.15325 5.37213 5.46375 5.55220 5.60073 5.77756 5.81511 5.87052 5.92050 6.03906 6.07762 6.16275 6.36913 6.45410 6.49283 6.52182 6.57884 6.79931 6.82437 6.92289 7.16041 7.23927 7.37299 7.53421 7.65591 7.67949 7.78588 7.88751 7.99049 8.19323 8.53610 9.05699 9.65905 11.12627 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.006298 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.999954 B = 4445.103652 C = 4807.960095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.126 3.874 3 C -0.127 4.127 4 O -0.560 6.560 5 C 0.036 3.964 6 N -0.682 5.682 7 C 0.093 3.907 8 C -0.091 4.091 9 C -0.107 4.107 10 C 0.043 3.957 11 C -0.498 4.498 12 H 0.055 0.945 13 C 0.060 3.940 14 N -0.893 5.893 15 Si 0.883 3.117 16 H -0.282 1.282 17 H -0.289 1.289 18 H -0.274 1.274 19 C -0.104 4.104 20 C -0.125 4.125 21 H 0.065 0.935 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.077 0.923 25 H 0.049 0.951 26 H 0.064 0.936 27 H 0.372 0.628 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.345 0.655 31 H 0.058 0.942 32 H 0.041 0.959 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.046 0.954 36 H 0.023 0.977 37 H 0.257 0.743 38 H 0.089 0.911 39 H 0.011 0.989 40 H 0.025 0.975 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.254 8.517 -3.510 14.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.085 3.915 3 C -0.184 4.184 4 O -0.365 6.365 5 C -0.094 4.094 6 N -0.312 5.312 7 C -0.016 4.016 8 C -0.129 4.129 9 C -0.145 4.145 10 C 0.024 3.976 11 C -0.536 4.536 12 H 0.074 0.926 13 C -0.141 4.141 14 N -0.532 5.532 15 Si 0.712 3.288 16 H -0.208 1.208 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.143 4.143 20 C -0.164 4.164 21 H 0.084 0.916 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.096 0.904 25 H 0.068 0.932 26 H 0.083 0.917 27 H 0.219 0.781 28 H 0.046 0.954 29 H 0.091 0.909 30 H 0.164 0.836 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.107 0.893 39 H 0.030 0.970 40 H 0.044 0.956 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.988 9.546 -3.337 14.934 hybrid contribution 0.166 -1.840 -0.870 2.042 sum -10.823 7.706 -4.207 13.936 Atomic orbital electron populations 1.22473 0.96185 1.02207 1.02644 1.21324 0.91755 0.93897 0.84516 1.21581 1.03495 0.92427 1.00911 1.86576 1.77300 1.28615 1.44023 1.22587 0.90724 0.98027 0.98099 1.60644 1.03352 1.60827 1.06405 1.21590 0.96296 0.92593 0.91128 1.21329 0.95526 0.96903 0.99132 1.21561 0.98290 0.99224 0.95473 1.18691 0.93011 0.89307 0.96546 1.21168 1.24375 0.91839 1.16211 0.92642 1.24946 0.96156 0.96189 0.96777 1.69880 1.43889 0.97794 1.41686 0.86726 0.81742 0.77511 0.82849 1.20842 1.21457 1.19924 1.21443 0.96296 1.02941 0.93586 1.21995 0.98369 0.94589 1.01406 0.91618 0.91861 0.92564 0.90357 0.93165 0.91731 0.78095 0.95383 0.90874 0.83635 0.92376 0.94031 0.91293 0.95026 0.93501 0.95914 0.93261 0.89300 0.96998 0.95642 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.68 8.81 37.16 0.33 -1.35 16 2 C 0.13 1.47 1.17 -90.62 -0.11 1.37 16 3 C -0.13 -1.51 8.63 37.16 0.32 -1.19 16 4 O -0.56 -7.09 12.50 -35.23 -0.44 -7.53 16 5 C 0.04 0.48 4.66 -3.83 -0.02 0.46 16 6 N -0.68 -10.78 5.27 -106.73 -0.56 -11.34 16 7 C 0.09 1.68 2.47 -67.71 -0.17 1.52 16 8 C -0.09 -1.76 5.30 -26.73 -0.14 -1.90 16 9 C -0.11 -2.25 5.41 -26.74 -0.14 -2.39 16 10 C 0.04 1.05 2.58 -91.77 -0.24 0.82 16 11 C -0.50 -13.23 6.61 -34.44 -0.23 -13.45 16 12 H 0.06 1.48 6.71 -52.49 -0.35 1.12 16 13 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 14 N -0.89 -25.30 11.33 55.43 0.63 -24.67 16 15 Si 0.88 21.25 29.54 -169.99 -5.02 16.23 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 19 C -0.10 -2.43 5.23 -26.75 -0.14 -2.57 16 20 C -0.12 -2.56 4.95 -26.76 -0.13 -2.70 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.08 1.07 7.47 -51.93 -0.39 0.68 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.37 3.62 9.05 45.56 0.41 4.03 16 28 H 0.03 0.38 7.44 -51.93 -0.39 0.00 16 29 H 0.07 0.95 8.05 -51.93 -0.42 0.53 16 30 H 0.34 5.77 8.03 -39.29 -0.32 5.45 16 31 H 0.06 1.05 7.80 -51.93 -0.40 0.64 16 32 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 1.46 6.62 -51.93 -0.34 1.12 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 36 H 0.02 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 38 H 0.09 2.34 6.08 -51.93 -0.32 2.03 16 39 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 40 H 0.02 0.49 7.45 -51.93 -0.39 0.10 16 41 H 0.07 1.66 7.20 -51.93 -0.37 1.29 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -27.92 312.73 -8.08 -36.00 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -6.64 Total: 6.46 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -0.76 Total: -19.86 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.07 Total: -36.01 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.44 Total: -7.53 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.92 -8.08 -36.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.937 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds