Wall clock time and date at job start Sun Mar 29 2020 22:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46985 * 2 1 4 4 O 1.42903 * 109.47178 * 240.00579 * 2 1 3 5 5 C 1.52996 * 109.47491 * 120.00067 * 2 1 3 6 6 N 1.46896 * 109.47200 * 184.99878 * 5 2 1 7 7 C 1.46903 * 111.00418 * 179.97438 * 6 5 2 8 8 C 1.52998 * 109.47667 * 205.00504 * 7 6 5 9 9 C 1.52997 * 109.47232 * 180.02562 * 8 7 6 10 10 C 1.52992 * 109.47296 * 59.99748 * 9 8 7 11 11 C 1.50700 * 109.47257 * 59.99902 * 10 9 8 12 12 H 1.07999 * 119.99988 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00047 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99792 * 359.72305 * 13 11 10 15 15 Si 1.86795 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 89.99795 * 15 13 11 17 17 H 1.48495 * 109.47293 * 209.99997 * 15 13 11 18 18 H 1.48507 * 109.47015 * 329.99955 * 15 13 11 19 19 C 1.53003 * 109.47195 * 299.99941 * 10 9 8 20 20 C 1.52994 * 109.46903 * 84.99606 * 7 6 5 21 21 H 1.09002 * 109.46838 * 299.99584 * 1 2 3 22 22 H 1.08997 * 109.47734 * 59.99463 * 1 2 3 23 23 H 1.09002 * 109.46995 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47335 * 180.02562 * 3 2 1 25 25 H 1.09000 * 109.47161 * 300.00040 * 3 2 1 26 26 H 1.09000 * 109.46915 * 59.99978 * 3 2 1 27 27 H 0.96704 * 113.99339 * 299.99967 * 4 2 1 28 28 H 1.08995 * 109.46990 * 64.99995 * 5 2 1 29 29 H 1.09002 * 109.47484 * 305.00069 * 5 2 1 30 30 H 1.00896 * 111.00418 * 303.95553 * 6 5 2 31 31 H 1.09005 * 109.46638 * 325.00521 * 7 6 5 32 32 H 1.08998 * 109.46987 * 59.99359 * 8 7 6 33 33 H 1.09005 * 109.46648 * 300.00005 * 8 7 6 34 34 H 1.08996 * 109.46678 * 299.99615 * 9 8 7 35 35 H 1.09004 * 109.46869 * 179.97438 * 9 8 7 36 36 H 1.08997 * 109.47279 * 180.02562 * 10 9 8 37 37 H 0.97000 * 119.99468 * 179.97438 * 14 13 11 38 38 H 1.08998 * 109.47453 * 180.02562 * 19 10 9 39 39 H 1.08996 * 109.47248 * 300.00419 * 19 10 9 40 40 H 1.08999 * 109.47824 * 300.01002 * 20 7 6 41 41 H 1.09005 * 109.46726 * 60.00969 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.0400 -0.7212 1.2492 6 7 3.5040 -0.6176 1.3110 7 6 4.0305 -1.2998 2.5007 8 6 5.3789 -0.6875 2.8851 9 6 5.9273 -1.3986 4.1238 10 6 6.1114 -2.8863 3.8182 11 6 7.0805 -3.0484 2.6756 12 1 7.5208 -2.1773 2.2133 13 6 7.4043 -4.3088 2.2197 14 7 6.8715 -5.3697 2.7856 15 14 8.6062 -4.5097 0.8039 16 1 9.9872 -4.6190 1.3387 17 1 8.2718 -5.7392 0.0414 18 1 8.5150 -3.3303 -0.0939 19 6 4.7629 -3.4987 3.4339 20 6 4.2142 -2.7878 2.1958 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6766 1.9563 0.8900 27 1 1.7209 -1.5951 -1.2330 28 1 1.7517 -1.7714 1.2055 29 1 1.6055 -0.2618 2.1370 30 1 3.9280 -0.9785 0.4696 31 1 3.3293 -1.1822 3.3269 32 1 5.2478 0.3725 3.1023 33 1 6.0800 -0.8051 2.0588 34 1 5.2263 -1.2813 4.9501 35 1 6.8882 -0.9626 4.3973 36 1 6.5017 -3.3930 4.7008 37 1 7.0990 -6.2563 2.4646 38 1 4.8939 -4.5587 3.2167 39 1 4.0619 -3.3814 4.2603 40 1 3.2536 -3.2240 1.9219 41 1 4.9155 -2.9053 1.3695 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324702.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:05 Heat of formation + Delta-G solvation = -99.402687 kcal Electronic energy + Delta-G solvation = -18527.103484 eV Core-core repulsion = 15825.686235 eV Total energy + Delta-G solvation = -2701.417250 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.13472 -38.96924 -35.82372 -34.02872 -32.91634 -31.21901 -29.81193 -28.14304 -26.92629 -25.29614 -23.12371 -22.12752 -21.30872 -20.47755 -18.00799 -17.41200 -16.77971 -16.39586 -16.27913 -15.50432 -15.38442 -14.99290 -14.70642 -14.50515 -13.79774 -13.47250 -13.34300 -13.11231 -13.01116 -12.90795 -12.78389 -12.70567 -12.58042 -12.43067 -12.41847 -12.14747 -11.73608 -11.57876 -11.44175 -11.10876 -10.74516 -10.67308 -10.56690 -10.30646 -9.12744 -8.02913 -6.12475 1.39543 1.41961 1.50515 2.45601 3.17710 3.25219 3.51256 3.95478 4.04654 4.06980 4.19824 4.27237 4.48223 4.61674 4.70074 4.75242 4.76680 4.80739 4.88286 4.90992 4.98689 5.01605 5.08446 5.13069 5.19530 5.26106 5.30110 5.46066 5.51777 5.57524 5.62962 5.65426 5.74459 5.96938 6.23117 6.27619 6.46608 6.54868 6.88706 6.97574 7.53227 9.01743 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027580 B = 0.006298 C = 0.005822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.999954 B = 4445.103652 C = 4807.960095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.127 3.873 3 C -0.127 4.127 4 O -0.577 6.577 5 C 0.035 3.965 6 N -0.678 5.678 7 C 0.105 3.895 8 C -0.084 4.084 9 C -0.102 4.102 10 C 0.037 3.963 11 C -0.502 4.502 12 H 0.052 0.948 13 C 0.013 3.987 14 N -0.920 5.920 15 Si 0.940 3.060 16 H -0.280 1.280 17 H -0.288 1.288 18 H -0.269 1.269 19 C -0.100 4.100 20 C -0.113 4.113 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.383 0.617 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.339 0.661 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.050 0.950 35 H 0.045 0.955 36 H -0.013 1.013 37 H 0.256 0.744 38 H 0.054 0.946 39 H 0.025 0.975 40 H 0.038 0.962 41 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.579 9.900 -4.035 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.086 3.914 3 C -0.184 4.184 4 O -0.385 6.385 5 C -0.094 4.094 6 N -0.307 5.307 7 C -0.005 4.005 8 C -0.122 4.122 9 C -0.140 4.140 10 C 0.018 3.982 11 C -0.540 4.540 12 H 0.070 0.930 13 C -0.184 4.184 14 N -0.561 5.561 15 Si 0.767 3.233 16 H -0.206 1.206 17 H -0.214 1.214 18 H -0.194 1.194 19 C -0.139 4.139 20 C -0.152 4.152 21 H 0.095 0.905 22 H 0.085 0.915 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.232 0.768 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.157 0.843 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.005 0.995 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.044 0.956 40 H 0.057 0.943 41 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -12.320 10.939 -3.866 16.923 hybrid contribution 0.571 -2.276 -0.675 2.442 sum -11.749 8.662 -4.541 15.287 Atomic orbital electron populations 1.22404 0.94101 1.02988 1.03393 1.21355 0.93230 0.93349 0.83427 1.21588 1.02097 0.92902 1.01836 1.86551 1.77828 1.29687 1.44403 1.22702 0.88871 0.98401 0.99462 1.60627 1.05028 1.59871 1.05194 1.21394 0.96037 0.90583 0.92479 1.21245 0.95605 0.97978 0.97413 1.21468 0.99004 0.96538 0.96982 1.18702 0.93227 0.91748 0.94478 1.21402 1.24484 0.91656 1.16491 0.93014 1.25612 0.97744 0.96103 0.98984 1.70020 1.45098 0.98014 1.42952 0.85828 0.79778 0.77432 0.80291 1.20564 1.21357 1.19370 1.21306 0.96128 1.01083 0.95374 1.21847 0.97953 0.96493 0.98876 0.90511 0.91481 0.91812 0.92474 0.92647 0.90475 0.76805 0.95418 0.89923 0.84272 0.91224 0.91908 0.93483 0.93155 0.93650 0.99479 0.93467 0.92741 0.95585 0.94295 0.93761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 8.81 71.98 0.63 -2.07 16 2 C 0.13 2.66 1.17 -10.79 -0.01 2.65 16 3 C -0.13 -2.74 8.63 71.98 0.62 -2.12 16 4 O -0.58 -13.58 12.50 -148.98 -1.86 -15.44 16 5 C 0.04 0.85 4.66 86.30 0.40 1.25 16 6 N -0.68 -20.08 5.27 -491.59 -2.59 -22.67 16 7 C 0.10 3.59 2.47 44.91 0.11 3.70 16 8 C -0.08 -3.13 5.30 30.59 0.16 -2.97 16 9 C -0.10 -4.16 5.41 30.59 0.17 -3.99 16 10 C 0.04 1.84 2.58 -11.54 -0.03 1.81 16 11 C -0.50 -27.06 6.61 25.60 0.17 -26.89 16 12 H 0.05 2.78 6.71 -2.91 -0.02 2.76 16 13 C 0.01 0.73 5.30 84.66 0.45 1.17 16 14 N -0.92 -53.37 11.33 21.45 0.24 -53.13 16 15 Si 0.94 44.05 29.54 68.60 2.03 46.07 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 19 C -0.10 -4.70 5.23 30.58 0.16 -4.54 16 20 C -0.11 -4.55 4.95 30.58 0.15 -4.40 16 21 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 24 H 0.06 1.47 7.47 -2.39 -0.02 1.45 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.38 6.78 9.05 -74.05 -0.67 6.11 16 28 H 0.03 0.68 7.44 -2.39 -0.02 0.66 16 29 H 0.08 1.85 8.05 -2.39 -0.02 1.83 16 30 H 0.34 10.93 8.03 -89.70 -0.72 10.21 16 31 H 0.07 2.28 7.80 -2.38 -0.02 2.26 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 1.95 6.62 -2.38 -0.02 1.94 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.83 8.14 -2.38 -0.02 1.82 16 36 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.05 2.94 6.08 -2.39 -0.01 2.92 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 1.44 7.45 -2.39 -0.02 1.43 16 41 H 0.04 2.03 7.20 -2.38 -0.02 2.02 16 Total: -1.00 -59.79 312.73 0.41 -59.38 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.39 Total: 22.19 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 2.98 Total: -36.40 kcal Atomic # 7 Polarization: -73.45 SS G_CDS: -2.35 Total: -75.80 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: -1.86 Total: -15.44 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -59.79 0.41 -59.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324702.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.018 kcal (2) G-P(sol) polarization free energy of solvation -59.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds