Wall clock time and date at job start Sun Mar 29 2020 22:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47598 * 2 1 4 4 C 1.53006 * 109.47385 * 239.99782 * 2 1 3 5 5 O 1.42900 * 109.46912 * 56.94168 * 4 2 1 6 6 N 1.46900 * 109.46919 * 120.00001 * 2 1 3 7 7 C 1.46899 * 111.00247 * 54.85782 * 6 2 1 8 8 C 1.52986 * 109.47807 * 128.96980 * 7 6 2 9 9 C 1.53001 * 109.47516 * 179.97438 * 8 7 6 10 10 C 1.53004 * 109.46954 * 300.00030 * 9 8 7 11 11 C 1.50699 * 109.47006 * 180.02562 * 10 9 8 12 12 H 1.07993 * 120.00170 * 359.97438 * 11 10 9 13 13 C 1.37881 * 119.99654 * 180.02562 * 11 10 9 14 14 N 1.31510 * 119.99936 * 359.72137 * 13 11 10 15 15 Si 1.86804 * 119.99556 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47266 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46734 * 120.00274 * 15 13 11 18 18 H 1.48501 * 109.46886 * 239.99976 * 15 13 11 19 19 C 1.53000 * 109.46868 * 59.99697 * 10 9 8 20 20 C 1.52995 * 109.47127 * 299.99756 * 19 10 9 21 21 H 1.08998 * 109.47151 * 293.91517 * 1 2 3 22 22 H 1.09002 * 109.46878 * 53.91290 * 1 2 3 23 23 H 1.09000 * 109.47191 * 173.91462 * 1 2 3 24 24 H 1.08999 * 109.47829 * 185.08096 * 3 2 1 25 25 H 1.09003 * 109.47127 * 305.08187 * 3 2 1 26 26 H 1.08998 * 109.46953 * 65.07519 * 3 2 1 27 27 H 1.08999 * 109.47181 * 176.93641 * 4 2 1 28 28 H 1.08997 * 109.47108 * 296.94452 * 4 2 1 29 29 H 0.96699 * 114.00169 * 180.02562 * 5 4 2 30 30 H 1.00908 * 110.99871 * 178.80741 * 6 2 1 31 31 H 1.09003 * 109.46978 * 8.96396 * 7 6 2 32 32 H 1.09003 * 109.47328 * 59.99631 * 8 7 6 33 33 H 1.09004 * 109.47140 * 300.00194 * 8 7 6 34 34 H 1.09002 * 109.46974 * 180.02562 * 9 8 7 35 35 H 1.08994 * 109.47232 * 59.99589 * 9 8 7 36 36 H 1.09003 * 109.46794 * 299.99677 * 10 9 8 37 37 H 0.97005 * 119.99506 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.46812 * 60.00566 * 19 10 9 39 39 H 1.09007 * 109.46613 * 180.02562 * 19 10 9 40 40 H 1.08995 * 109.47559 * 299.99736 * 20 19 10 41 41 H 1.09010 * 109.46765 * 180.02562 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 1.5059 -0.0905 -2.4149 6 7 2.0196 -0.6925 1.1994 7 6 1.4508 -2.0434 1.2965 8 6 2.5765 -3.0565 1.5131 9 6 1.9840 -4.4635 1.6148 10 6 1.0105 -4.5229 2.7937 11 6 0.4274 -5.9088 2.8943 12 1 0.7213 -6.6709 2.1878 13 6 -0.4822 -6.2036 3.8877 14 7 -0.8367 -5.2768 4.7508 15 14 -1.2056 -7.9214 4.0119 16 1 -0.6433 -8.7744 2.9341 17 1 -0.8663 -8.5069 5.3338 18 1 -2.6817 -7.8485 3.8669 19 6 -0.1152 -3.5097 2.5770 20 6 0.4774 -2.1028 2.4754 21 1 -0.3633 0.4166 0.9394 22 1 -0.3633 0.6053 -0.8305 23 1 -0.3633 -1.0219 -0.1089 24 1 3.1263 1.4438 -0.0910 25 1 1.6044 1.9819 -0.8410 26 1 1.7529 1.9293 0.9319 27 1 3.1286 -0.6740 -1.2771 28 1 1.7222 -1.7635 -1.2222 29 1 1.7877 -0.4966 -3.2460 30 1 3.0281 -0.7230 1.2130 31 1 0.9203 -2.2814 0.3745 32 1 3.1070 -2.8186 2.4351 33 1 3.2703 -3.0139 0.6734 34 1 2.7861 -5.1852 1.7696 35 1 1.4532 -4.7017 0.6931 36 1 1.5414 -4.2847 3.7155 37 1 -1.4769 -5.4841 5.4494 38 1 -0.6460 -3.7480 1.6553 39 1 -0.8085 -3.5517 3.4172 40 1 1.0080 -1.8646 3.3972 41 1 -0.3248 -1.3810 2.3215 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324849.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:50:13 Heat of formation + Delta-G solvation = -96.052433 kcal Electronic energy + Delta-G solvation = -18561.160659 eV Core-core repulsion = 15859.888687 eV Total energy + Delta-G solvation = -2701.271972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.51474 -38.46810 -36.43571 -34.63738 -32.27802 -31.43465 -29.26141 -28.21803 -27.04448 -26.00573 -23.21344 -22.25964 -20.52735 -20.05017 -18.46270 -18.37479 -16.89216 -16.43856 -16.09140 -15.79034 -15.54769 -14.98646 -14.68271 -14.43284 -14.00739 -13.61003 -13.54468 -13.30735 -12.97671 -12.96466 -12.85860 -12.67456 -12.47535 -12.21069 -12.05443 -11.87843 -11.79847 -11.73220 -11.60468 -11.15155 -10.84952 -10.70832 -10.51958 -10.34221 -9.32860 -8.05985 -6.20161 1.39426 1.41316 1.52342 2.44003 3.07065 3.20635 3.47439 3.82362 3.99120 4.09053 4.12883 4.23026 4.42824 4.52242 4.57431 4.61657 4.70371 4.84012 4.86235 4.90380 4.94429 5.00308 5.01895 5.07913 5.11212 5.20280 5.31839 5.40867 5.41225 5.47406 5.53208 5.63986 5.73452 6.05899 6.15565 6.26169 6.43439 6.58157 6.87496 6.93616 7.47926 8.98047 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.042502 B = 0.005336 C = 0.005239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.640803 B = 5246.413761 C = 5343.478516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.108 3.892 3 C -0.125 4.125 4 C 0.053 3.947 5 O -0.578 6.578 6 N -0.670 5.670 7 C 0.099 3.901 8 C -0.119 4.119 9 C -0.099 4.099 10 C 0.045 3.955 11 C -0.534 4.534 12 H 0.050 0.950 13 C 0.011 3.989 14 N -0.917 5.917 15 Si 0.951 3.049 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.101 4.101 20 C -0.089 4.089 21 H 0.053 0.947 22 H 0.066 0.934 23 H 0.040 0.960 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.037 0.963 29 H 0.393 0.607 30 H 0.348 0.652 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.047 0.953 35 H 0.045 0.955 36 H -0.008 1.008 37 H 0.259 0.741 38 H 0.022 0.978 39 H 0.054 0.946 40 H 0.041 0.959 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.701 10.352 -11.827 17.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.017 3.983 3 C -0.183 4.183 4 C -0.027 4.027 5 O -0.385 6.385 6 N -0.303 5.303 7 C -0.010 4.010 8 C -0.158 4.158 9 C -0.137 4.137 10 C 0.026 3.974 11 C -0.572 4.572 12 H 0.068 0.932 13 C -0.187 4.187 14 N -0.557 5.557 15 Si 0.777 3.223 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.207 1.207 19 C -0.140 4.140 20 C -0.128 4.128 21 H 0.072 0.928 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.080 0.920 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.055 0.945 29 H 0.242 0.758 30 H 0.167 0.833 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.010 0.990 37 H 0.068 0.932 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.060 0.940 41 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.855 11.058 -10.829 16.547 hybrid contribution 0.060 -2.004 -0.520 2.072 sum 5.915 9.053 -11.349 15.677 Atomic orbital electron populations 1.21800 0.94317 1.01149 1.01610 1.21007 0.95624 0.95133 0.86506 1.21678 1.00993 0.93558 1.02040 1.23022 0.97363 0.95638 0.86666 1.86429 1.75208 1.60075 1.16760 1.60824 1.13443 1.17840 1.38157 1.21424 0.95178 0.86960 0.97423 1.21897 0.97249 0.94880 1.01724 1.21443 0.98069 0.95650 0.98523 1.18632 0.92578 0.93465 0.92686 1.21673 1.24728 0.97525 1.13294 0.93160 1.25744 0.97092 1.00436 0.95450 1.70043 1.33933 1.34352 1.17363 0.85619 0.78122 0.80652 0.77944 1.19143 1.20692 1.20707 1.21407 0.99528 0.93747 0.99273 1.21469 0.97650 0.96056 0.97611 0.92795 0.91485 0.94106 0.91986 0.91656 0.92284 0.92480 0.94455 0.75811 0.83259 0.92651 0.92143 0.90702 0.93411 0.93580 0.99026 0.93187 0.95907 0.92697 0.93984 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.53 7.22 71.98 0.52 -3.01 16 2 C 0.11 2.58 0.77 3.53 0.00 2.58 16 3 C -0.13 -2.57 8.60 71.98 0.62 -1.95 16 4 C 0.05 1.11 5.87 71.98 0.42 1.54 16 5 O -0.58 -11.36 12.53 -148.98 -1.87 -13.22 16 6 N -0.67 -17.69 6.01 -448.30 -2.69 -20.38 16 7 C 0.10 3.18 1.45 44.91 0.07 3.25 16 8 C -0.12 -3.81 5.02 30.59 0.15 -3.66 16 9 C -0.10 -3.98 5.14 30.60 0.16 -3.83 16 10 C 0.04 2.27 2.10 -11.54 -0.02 2.25 16 11 C -0.53 -29.94 8.56 25.60 0.22 -29.72 16 12 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 13 C 0.01 0.62 5.30 84.66 0.45 1.07 16 14 N -0.92 -54.21 11.33 21.45 0.24 -53.97 16 15 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 16 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 19 C -0.10 -4.90 4.98 30.59 0.15 -4.75 16 20 C -0.09 -3.56 5.47 30.59 0.17 -3.39 16 21 H 0.05 1.52 7.78 -2.39 -0.02 1.50 16 22 H 0.07 1.69 7.80 -2.39 -0.02 1.67 16 23 H 0.04 1.21 6.54 -2.39 -0.02 1.19 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.33 7.91 -2.39 -0.02 1.31 16 26 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 0.87 6.46 -2.39 -0.02 0.85 16 29 H 0.39 4.30 9.12 -74.06 -0.68 3.63 16 30 H 0.35 7.92 8.10 -89.69 -0.73 7.20 16 31 H 0.06 1.83 4.77 -2.39 -0.01 1.82 16 32 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 36 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 37 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.05 3.06 6.08 -2.38 -0.01 3.05 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.85 7.17 -2.38 -0.02 1.84 16 Total: -1.00 -62.95 310.40 0.21 -62.74 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -0.40 Total: 18.13 kcal Atomic # 6 Polarization: -42.53 SS G_CDS: 2.90 Total: -39.63 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -2.45 Total: -74.35 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: -1.87 Total: -13.22 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -62.95 0.21 -62.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324849.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.316 kcal (2) G-P(sol) polarization free energy of solvation -62.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds