Wall clock time and date at job start Sun Mar 29 2020 23:08:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47164 * 2 1 4 4 H 1.09000 * 109.47377 * 54.28281 * 3 2 1 5 5 C 1.52998 * 109.47208 * 174.28599 * 3 2 1 6 6 O 1.42897 * 109.47741 * 54.99600 * 5 3 2 7 7 N 1.46904 * 109.46867 * 294.28262 * 3 2 1 8 8 C 1.46892 * 110.99733 * 116.13297 * 7 3 2 9 9 C 1.53005 * 109.47091 * 206.89682 * 8 7 3 10 10 C 1.53000 * 109.47130 * 179.97438 * 9 8 7 11 11 C 1.53008 * 109.46767 * 60.00483 * 10 9 8 12 12 C 1.50705 * 109.47066 * 59.99912 * 11 10 9 13 13 H 1.07998 * 119.99813 * 359.97438 * 12 11 10 14 14 C 1.37873 * 119.99776 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00004 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 120.00185 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46966 * 89.99852 * 16 14 12 18 18 H 1.48500 * 109.47030 * 210.00000 * 16 14 12 19 19 H 1.48496 * 109.46982 * 329.99792 * 16 14 12 20 20 C 1.52996 * 109.47003 * 299.99668 * 11 10 9 21 21 C 1.52994 * 109.47118 * 60.00219 * 20 11 10 22 22 H 1.09003 * 109.47031 * 184.20994 * 1 2 3 23 23 H 1.08998 * 109.47226 * 304.21197 * 1 2 3 24 24 H 1.08997 * 109.46987 * 64.21412 * 1 2 3 25 25 H 1.09000 * 109.47569 * 239.99907 * 2 1 3 26 26 H 1.09003 * 109.47086 * 119.99496 * 2 1 3 27 27 H 1.08997 * 109.47443 * 175.00109 * 5 3 2 28 28 H 1.09009 * 109.47130 * 294.99488 * 5 3 2 29 29 H 0.96698 * 114.00393 * 180.02562 * 6 5 3 30 30 H 1.00893 * 110.99605 * 240.08813 * 7 3 2 31 31 H 1.08996 * 109.47885 * 326.90178 * 8 7 3 32 32 H 1.08998 * 109.46870 * 60.00533 * 9 8 7 33 33 H 1.08996 * 109.47025 * 300.00401 * 9 8 7 34 34 H 1.09000 * 109.47328 * 300.00562 * 10 9 8 35 35 H 1.08997 * 109.46947 * 179.97438 * 10 9 8 36 36 H 1.09001 * 109.46922 * 179.97438 * 11 10 9 37 37 H 0.96997 * 120.00412 * 180.02562 * 15 14 12 38 38 H 1.09007 * 109.46933 * 180.02562 * 20 11 10 39 39 H 1.09000 * 109.47414 * 300.00118 * 20 11 10 40 40 H 1.09008 * 109.47355 * 179.97438 * 21 20 11 41 41 H 1.08996 * 109.47384 * 60.00034 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5955 1.9851 0.8344 5 6 3.5632 1.4449 0.1436 6 8 4.1400 0.6367 -0.8840 7 7 1.6662 2.0940 -1.2625 8 6 0.7421 3.2109 -1.0250 9 6 -0.1256 3.4276 -2.2665 10 6 -1.0886 4.5905 -2.0189 11 6 -0.2887 5.8618 -1.7275 12 6 0.5930 6.1820 -2.9071 13 1 0.5840 5.5425 -3.7773 14 6 1.4110 7.2914 -2.8752 15 7 2.1808 7.5706 -3.9044 16 14 1.4260 8.3980 -1.3703 17 1 2.4559 7.9187 -0.4137 18 1 1.7422 9.7893 -1.7821 19 1 0.0920 8.3656 -0.7188 20 6 0.5790 5.6451 -0.4862 21 6 1.5419 4.4822 -0.7337 22 1 -0.3633 -1.0249 0.0754 23 1 -0.3633 0.5778 0.8498 24 1 -0.3633 0.4470 -0.9253 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.9350 2.4657 0.0547 28 1 3.8369 1.0424 1.1190 29 1 5.1054 0.5921 -0.8541 30 1 2.4842 2.4023 -1.7663 31 1 0.1044 2.9798 -0.1719 32 1 -0.6958 2.5221 -2.4738 33 1 0.5121 3.6588 -3.1196 34 1 -1.7263 4.3589 -1.1658 35 1 -1.7064 4.7452 -2.9035 36 1 -0.9747 6.6904 -1.5516 37 1 2.7566 8.3508 -3.8818 38 1 1.1486 6.5510 -0.2783 39 1 -0.0587 5.4135 0.3670 40 1 2.1604 4.3281 0.1506 41 1 2.1796 4.7138 -1.5868 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324982.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:35 Heat of formation + Delta-G solvation = -93.685632 kcal Electronic energy + Delta-G solvation = -18763.545495 eV Core-core repulsion = 16062.376155 eV Total energy + Delta-G solvation = -2701.169340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.26112 -38.49229 -36.23401 -34.45589 -33.11712 -31.56682 -30.40819 -28.31504 -26.20289 -24.19652 -23.43156 -22.27149 -21.45048 -20.33796 -18.39355 -18.15440 -17.07893 -16.41341 -16.12459 -15.78576 -15.33981 -15.14320 -14.84094 -14.63041 -14.22563 -13.89814 -13.86635 -13.39017 -13.07867 -13.04839 -12.90811 -12.62641 -12.29727 -12.00204 -11.81021 -11.72721 -11.65404 -11.60429 -11.52439 -11.03501 -10.85016 -10.75946 -10.67014 -10.55188 -9.10659 -8.22690 -6.21992 1.28315 1.34889 1.44482 2.35377 3.13325 3.19042 3.57458 3.90210 4.00724 4.08541 4.14694 4.32556 4.43485 4.52405 4.58949 4.63624 4.65735 4.70037 4.77485 4.82330 4.86734 4.88655 4.95262 5.06126 5.16940 5.22193 5.24979 5.41781 5.49175 5.51605 5.58580 5.61186 5.62624 5.76794 5.86243 6.37158 6.42350 6.57013 6.83995 6.93244 7.41050 8.94188 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028069 B = 0.007146 C = 0.006496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.297684 B = 3917.409848 C = 4308.982962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C 0.082 3.918 4 H 0.076 0.924 5 C 0.062 3.938 6 O -0.580 6.580 7 N -0.678 5.678 8 C 0.109 3.891 9 C -0.089 4.089 10 C -0.094 4.094 11 C 0.001 3.999 12 C -0.488 4.488 13 H 0.035 0.965 14 C 0.009 3.991 15 N -0.955 5.955 16 Si 0.943 3.057 17 H -0.272 1.272 18 H -0.306 1.306 19 H -0.249 1.249 20 C -0.114 4.114 21 C -0.126 4.126 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.392 0.608 30 H 0.338 0.662 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.035 0.965 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.027 0.973 39 H 0.068 0.932 40 H 0.054 0.946 41 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.041 -13.044 12.900 18.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.028 4.028 4 H 0.094 0.906 5 C -0.017 4.017 6 O -0.387 6.387 7 N -0.308 5.308 8 C -0.001 4.001 9 C -0.127 4.127 10 C -0.132 4.132 11 C -0.017 4.017 12 C -0.527 4.527 13 H 0.054 0.946 14 C -0.186 4.186 15 N -0.596 5.596 16 Si 0.772 3.228 17 H -0.198 1.198 18 H -0.234 1.234 19 H -0.173 1.173 20 C -0.152 4.152 21 C -0.165 4.165 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.066 0.934 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.087 0.913 29 H 0.241 0.759 30 H 0.157 0.843 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.054 0.946 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.037 0.963 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.971 -13.487 12.538 18.440 hybrid contribution 1.695 1.871 0.441 2.562 sum 0.724 -11.617 12.978 17.433 Atomic orbital electron populations 1.21674 0.95796 1.01126 1.01492 1.21333 0.95860 0.94872 1.01359 1.21901 0.92604 0.96588 0.91667 0.90634 1.22667 0.93889 0.93783 0.91323 1.86510 1.26508 1.71732 1.53970 1.60563 1.19915 1.29885 1.20447 1.21514 0.93436 0.87597 0.97522 1.21278 0.97152 0.96742 0.97501 1.21333 0.96981 0.94627 1.00231 1.19240 0.94317 0.95089 0.93088 1.21272 1.21410 1.08625 1.01359 0.94645 1.25783 0.95268 0.99072 0.98492 1.70060 1.28083 1.28799 1.32705 0.85921 0.79770 0.76854 0.80243 1.19818 1.23432 1.17285 1.21748 0.98138 0.96869 0.98461 1.22017 0.98299 0.96285 0.99902 0.92590 0.93005 0.93394 0.92775 0.91387 0.94356 0.91298 0.75906 0.84346 0.89974 0.92032 0.94587 0.91412 0.93681 0.96278 0.93068 0.95463 0.91361 0.92774 0.93953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 9.76 71.98 0.70 -2.43 16 2 C -0.10 -2.16 5.31 30.59 0.16 -1.99 16 3 C 0.08 1.97 2.45 44.92 0.11 2.08 16 4 H 0.08 1.72 7.23 -2.39 -0.02 1.70 16 5 C 0.06 1.30 6.44 71.98 0.46 1.76 16 6 O -0.58 -12.86 12.66 -148.98 -1.89 -14.74 16 7 N -0.68 -20.45 5.72 -469.46 -2.68 -23.13 16 8 C 0.11 3.54 2.31 44.92 0.10 3.65 16 9 C -0.09 -3.29 5.30 30.60 0.16 -3.13 16 10 C -0.09 -3.58 5.41 30.60 0.17 -3.41 16 11 C 0.00 0.07 2.18 -11.54 -0.03 0.04 16 12 C -0.49 -27.25 7.19 25.60 0.18 -27.07 16 13 H 0.04 2.21 6.95 -2.91 -0.02 2.19 16 14 C 0.01 0.55 5.45 84.65 0.46 1.01 16 15 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 16 Si 0.94 45.54 24.38 68.60 1.67 47.21 16 17 H -0.27 -12.54 6.87 99.48 0.68 -11.86 16 18 H -0.31 -14.95 7.11 99.48 0.71 -14.24 16 19 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 20 C -0.11 -4.57 4.94 30.59 0.15 -4.41 16 21 C -0.13 -4.69 4.96 30.59 0.15 -4.54 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 24 H 0.05 1.23 7.89 -2.39 -0.02 1.21 16 25 H 0.05 1.43 7.75 -2.39 -0.02 1.41 16 26 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.39 5.20 9.12 -74.06 -0.68 4.53 16 30 H 0.34 11.34 7.63 -89.70 -0.68 10.65 16 31 H 0.08 2.39 7.48 -2.39 -0.02 2.38 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.04 1.60 6.62 -2.39 -0.02 1.59 16 34 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.02 0.88 7.20 -2.39 -0.02 0.87 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.03 1.17 3.28 -2.38 -0.01 1.16 16 39 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.05 1.76 8.13 -2.38 -0.02 1.74 16 41 H 0.04 1.92 7.20 -2.39 -0.02 1.90 16 Total: -1.00 -65.76 307.00 -0.24 -66.00 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: -0.44 Total: 23.01 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 2.79 Total: -38.44 kcal Atomic # 7 Polarization: -80.65 SS G_CDS: -2.39 Total: -83.04 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -1.89 Total: -14.74 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.67 Total: 47.21 kcal Total: -65.76 -0.24 -66.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324982.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.683 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds