Wall clock time and date at job start Sun Mar 29 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 H 1.09000 * 109.47004 * 305.33711 * 3 2 1 5 5 C 1.52998 * 109.46790 * 185.33696 * 3 2 1 6 6 O 1.42901 * 109.47003 * 304.99756 * 5 3 2 7 7 N 1.46903 * 109.46863 * 65.33375 * 3 2 1 8 8 C 1.46898 * 110.99834 * 205.71032 * 7 3 2 9 9 C 1.53002 * 109.46922 * 86.67525 * 8 7 3 10 10 C 1.52993 * 109.47277 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47082 * 299.99877 * 10 9 8 12 12 C 1.50697 * 109.47345 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00293 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00193 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99790 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47086 * 90.00054 * 16 14 12 18 18 H 1.48499 * 109.47305 * 210.00028 * 16 14 12 19 19 H 1.48499 * 109.47394 * 329.99843 * 16 14 12 20 20 C 1.53002 * 109.46964 * 59.99932 * 11 10 9 21 21 C 1.52991 * 109.47166 * 206.67397 * 8 7 3 22 22 H 1.08997 * 109.47421 * 294.89563 * 1 2 3 23 23 H 1.09002 * 109.47073 * 54.90030 * 1 2 3 24 24 H 1.09002 * 109.47228 * 174.89832 * 1 2 3 25 25 H 1.08996 * 109.47059 * 240.00184 * 2 1 3 26 26 H 1.09004 * 109.47079 * 120.00025 * 2 1 3 27 27 H 1.08992 * 109.47532 * 64.99864 * 5 3 2 28 28 H 1.09001 * 109.46566 * 185.00592 * 5 3 2 29 29 H 0.96700 * 113.99978 * 180.02562 * 6 5 3 30 30 H 1.00906 * 110.99890 * 81.76143 * 7 3 2 31 31 H 1.09003 * 109.47169 * 326.67635 * 8 7 3 32 32 H 1.09002 * 109.47085 * 59.99517 * 9 8 7 33 33 H 1.09002 * 109.47218 * 299.99951 * 9 8 7 34 34 H 1.08999 * 109.47342 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47581 * 59.99670 * 10 9 8 36 36 H 1.09003 * 109.47186 * 300.00006 * 11 10 9 37 37 H 0.97008 * 119.99903 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47085 * 60.00583 * 20 11 10 39 39 H 1.09002 * 109.47218 * 180.02562 * 20 11 10 40 40 H 1.08998 * 109.47678 * 60.00341 * 21 8 7 41 41 H 1.09003 * 109.47270 * 300.00175 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6007 1.9832 -0.8383 5 6 3.5641 1.4446 -0.1342 6 8 4.1343 0.6386 0.8990 7 7 1.6582 2.0968 1.2587 8 6 1.5620 3.5526 1.0871 9 6 0.1599 3.9165 0.5948 10 6 0.0598 5.4326 0.4155 11 6 0.3252 6.1231 1.7547 12 6 0.2272 7.6165 1.5781 13 1 -0.0018 8.0316 0.6077 14 6 0.4301 8.4530 2.6552 15 7 0.3441 9.7562 2.5011 16 14 0.8256 7.7350 4.3337 17 1 2.2972 7.5985 4.4794 18 1 0.3049 8.6362 5.3929 19 1 0.1893 6.3995 4.4633 20 6 1.7274 5.7592 2.2471 21 6 1.8272 4.2426 2.4266 22 1 -0.3634 0.4326 0.9321 23 1 -0.3633 0.5909 -0.8408 24 1 -0.3634 -1.0236 -0.0914 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8438 1.0399 -1.1067 28 1 3.9352 2.4656 -0.0450 29 1 5.1000 0.5945 0.8756 30 1 2.3029 1.8617 1.9984 31 1 2.3006 3.8819 0.3562 32 1 -0.5787 3.5871 1.3256 33 1 -0.0291 3.4249 -0.3596 34 1 -0.9390 5.6918 0.0643 35 1 0.7983 5.7616 -0.3156 36 1 -0.4134 5.7942 2.4858 37 1 0.4872 10.3447 3.2589 38 1 2.4659 6.0883 1.5160 39 1 1.9163 6.2508 3.2014 40 1 2.8261 3.9834 2.7775 41 1 1.0886 3.9132 3.1575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:37 Heat of formation + Delta-G solvation = -76.554950 kcal Electronic energy + Delta-G solvation = -18416.376719 eV Core-core repulsion = 15715.950221 eV Total energy + Delta-G solvation = -2700.426497 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00370 -37.33318 -35.17809 -33.02973 -31.67141 -30.09962 -29.24640 -27.30360 -24.10627 -23.25075 -22.19054 -20.51712 -20.20602 -18.87550 -17.59934 -16.58625 -15.63677 -15.33615 -15.10916 -14.49663 -14.14255 -13.78662 -13.45818 -13.12392 -13.05292 -12.61090 -12.47424 -12.18415 -11.77530 -11.57415 -11.42698 -11.13561 -11.06570 -10.72534 -10.66381 -10.54693 -10.38906 -10.15472 -9.94421 -9.76280 -9.50844 -8.95285 -8.85428 -8.47300 -8.15357 -6.02951 -4.01128 3.29742 3.41366 3.44267 3.98968 4.43672 4.45510 4.75803 4.94421 5.17397 5.24760 5.27658 5.32493 5.37583 5.48846 5.60545 5.72492 5.77938 5.98713 6.01173 6.03279 6.11848 6.18456 6.25627 6.27873 6.38657 6.42820 6.48461 6.59235 6.72608 6.80681 6.97006 7.08461 7.32186 7.34160 7.42768 7.63166 7.67211 7.84480 8.58532 9.01900 9.60610 11.10595 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.005819 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.684053 B = 4811.020489 C = 5099.087300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C 0.089 3.911 4 H 0.087 0.913 5 C 0.043 3.957 6 O -0.568 6.568 7 N -0.677 5.677 8 C 0.091 3.909 9 C -0.103 4.103 10 C -0.099 4.099 11 C 0.014 3.986 12 C -0.511 4.511 13 H 0.072 0.928 14 C 0.067 3.933 15 N -0.905 5.905 16 Si 0.888 3.112 17 H -0.281 1.281 18 H -0.299 1.299 19 H -0.264 1.264 20 C -0.116 4.116 21 C -0.121 4.121 22 H 0.067 0.933 23 H 0.047 0.953 24 H 0.042 0.958 25 H 0.053 0.947 26 H 0.068 0.932 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.376 0.624 30 H 0.346 0.654 31 H 0.039 0.961 32 H 0.062 0.938 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.026 0.974 37 H 0.262 0.738 38 H 0.056 0.944 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.792 -18.268 -4.471 19.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.141 4.141 3 C -0.021 4.021 4 H 0.105 0.895 5 C -0.037 4.037 6 O -0.372 6.372 7 N -0.308 5.308 8 C -0.018 4.018 9 C -0.141 4.141 10 C -0.137 4.137 11 C -0.005 4.005 12 C -0.549 4.549 13 H 0.090 0.910 14 C -0.134 4.134 15 N -0.543 5.543 16 Si 0.718 3.282 17 H -0.208 1.208 18 H -0.227 1.227 19 H -0.189 1.189 20 C -0.154 4.154 21 C -0.159 4.159 22 H 0.086 0.914 23 H 0.066 0.934 24 H 0.061 0.939 25 H 0.072 0.928 26 H 0.086 0.914 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.223 0.777 30 H 0.165 0.835 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.044 0.956 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.483 -18.278 -4.317 19.309 hybrid contribution 1.970 0.211 0.673 2.093 sum 6.453 -18.067 -3.644 19.528 Atomic orbital electron populations 1.21663 0.95475 1.00226 1.02670 1.21350 0.96201 0.95033 1.01522 1.21782 0.90034 0.96378 0.93940 0.89497 1.23000 0.96546 0.93864 0.90274 1.86461 1.25041 1.72145 1.53591 1.60584 1.55165 1.08713 1.06385 1.21550 0.97406 0.85811 0.96993 1.21574 0.95846 0.96876 0.99806 1.21446 1.00720 0.92397 0.99156 1.19144 0.91887 0.96103 0.93325 1.21118 1.47705 0.88787 0.97314 0.91003 1.25038 0.94855 0.94681 0.98793 1.69910 1.50504 1.02599 1.31324 0.86836 0.78204 0.79009 0.84113 1.20816 1.22688 1.18906 1.21944 1.01182 0.91969 1.00318 1.21789 1.00089 0.97606 0.96431 0.91410 0.93430 0.93874 0.92821 0.91376 0.93632 0.93682 0.77745 0.83501 0.94342 0.91915 0.93532 0.92674 0.93158 0.95552 0.92798 0.92481 0.93579 0.93600 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.74 37.16 0.36 -1.21 16 2 C -0.10 -1.13 5.32 -26.73 -0.14 -1.27 16 3 C 0.09 1.04 2.22 -67.71 -0.15 0.89 16 4 H 0.09 1.04 7.24 -51.93 -0.38 0.67 16 5 C 0.04 0.44 6.69 37.16 0.25 0.69 16 6 O -0.57 -5.70 12.25 -35.23 -0.43 -6.13 16 7 N -0.68 -9.20 5.63 -99.74 -0.56 -9.77 16 8 C 0.09 1.43 2.28 -67.72 -0.15 1.28 16 9 C -0.10 -1.72 5.43 -26.73 -0.15 -1.86 16 10 C -0.10 -1.97 5.14 -26.73 -0.14 -2.11 16 11 C 0.01 0.33 1.69 -91.77 -0.16 0.18 16 12 C -0.51 -14.46 9.14 -34.44 -0.31 -14.77 16 13 H 0.07 2.19 7.99 -52.49 -0.42 1.78 16 14 C 0.07 1.96 5.45 -17.82 -0.10 1.86 16 15 N -0.90 -28.05 13.96 55.43 0.77 -27.27 16 16 Si 0.89 22.37 24.37 -169.99 -4.14 18.22 16 17 H -0.28 -6.89 6.87 56.52 0.39 -6.51 16 18 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 19 H -0.26 -6.40 6.53 56.52 0.37 -6.03 16 20 C -0.12 -2.50 4.68 -26.70 -0.13 -2.62 16 21 C -0.12 -2.13 5.18 -26.71 -0.14 -2.27 16 22 H 0.07 0.85 7.91 -51.93 -0.41 0.44 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.82 7.74 -51.93 -0.40 0.41 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.49 7.46 -51.93 -0.39 0.10 16 29 H 0.38 2.22 9.12 45.56 0.42 2.63 16 30 H 0.35 4.77 7.52 -39.29 -0.30 4.47 16 31 H 0.04 0.61 7.15 -51.93 -0.37 0.24 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.05 0.70 7.56 -51.93 -0.39 0.31 16 34 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.05 1.06 3.27 -51.93 -0.17 0.89 16 40 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 41 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 309.54 15.07 4.66 4.66 Total: -1.00 -30.52 309.54 -7.24 -37.75 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -6.59 Total: 3.75 kcal Atomic # 6 Polarization: -20.28 SS G_CDS: -0.95 Total: -21.22 kcal Atomic # 7 Polarization: -37.25 SS G_CDS: 0.21 Total: -37.04 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.43 Total: -6.13 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.14 Total: 18.22 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.52 -7.24 -37.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.803 kcal (2) G-P(sol) polarization free energy of solvation -30.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds