Wall clock time and date at job start Sun Mar 29 2020 23:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46992 * 2 1 4 4 H 1.09000 * 109.47004 * 305.33711 * 3 2 1 5 5 C 1.52998 * 109.46790 * 185.33696 * 3 2 1 6 6 O 1.42901 * 109.47003 * 304.99756 * 5 3 2 7 7 N 1.46903 * 109.46863 * 65.33375 * 3 2 1 8 8 C 1.46898 * 110.99834 * 205.71032 * 7 3 2 9 9 C 1.53002 * 109.46922 * 86.67525 * 8 7 3 10 10 C 1.52993 * 109.47277 * 180.02562 * 9 8 7 11 11 C 1.52999 * 109.47082 * 299.99877 * 10 9 8 12 12 C 1.50697 * 109.47345 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00293 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00193 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00014 * 180.02562 * 14 12 11 16 16 Si 1.86795 * 119.99790 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47086 * 90.00054 * 16 14 12 18 18 H 1.48499 * 109.47305 * 210.00028 * 16 14 12 19 19 H 1.48499 * 109.47394 * 329.99843 * 16 14 12 20 20 C 1.53002 * 109.46964 * 59.99932 * 11 10 9 21 21 C 1.52991 * 109.47166 * 206.67397 * 8 7 3 22 22 H 1.08997 * 109.47421 * 294.89563 * 1 2 3 23 23 H 1.09002 * 109.47073 * 54.90030 * 1 2 3 24 24 H 1.09002 * 109.47228 * 174.89832 * 1 2 3 25 25 H 1.08996 * 109.47059 * 240.00184 * 2 1 3 26 26 H 1.09004 * 109.47079 * 120.00025 * 2 1 3 27 27 H 1.08992 * 109.47532 * 64.99864 * 5 3 2 28 28 H 1.09001 * 109.46566 * 185.00592 * 5 3 2 29 29 H 0.96700 * 113.99978 * 180.02562 * 6 5 3 30 30 H 1.00906 * 110.99890 * 81.76143 * 7 3 2 31 31 H 1.09003 * 109.47169 * 326.67635 * 8 7 3 32 32 H 1.09002 * 109.47085 * 59.99517 * 9 8 7 33 33 H 1.09002 * 109.47218 * 299.99951 * 9 8 7 34 34 H 1.08999 * 109.47342 * 179.97438 * 10 9 8 35 35 H 1.09002 * 109.47581 * 59.99670 * 10 9 8 36 36 H 1.09003 * 109.47186 * 300.00006 * 11 10 9 37 37 H 0.97008 * 119.99903 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.47085 * 60.00583 * 20 11 10 39 39 H 1.09002 * 109.47218 * 180.02562 * 20 11 10 40 40 H 1.08998 * 109.47678 * 60.00341 * 21 8 7 41 41 H 1.09003 * 109.47270 * 300.00175 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6007 1.9832 -0.8383 5 6 3.5641 1.4446 -0.1342 6 8 4.1343 0.6386 0.8990 7 7 1.6582 2.0968 1.2587 8 6 1.5620 3.5526 1.0871 9 6 0.1599 3.9165 0.5948 10 6 0.0598 5.4326 0.4155 11 6 0.3252 6.1231 1.7547 12 6 0.2272 7.6165 1.5781 13 1 -0.0018 8.0316 0.6077 14 6 0.4301 8.4530 2.6552 15 7 0.3441 9.7562 2.5011 16 14 0.8256 7.7350 4.3337 17 1 2.2972 7.5985 4.4794 18 1 0.3049 8.6362 5.3929 19 1 0.1893 6.3995 4.4633 20 6 1.7274 5.7592 2.2471 21 6 1.8272 4.2426 2.4266 22 1 -0.3634 0.4326 0.9321 23 1 -0.3633 0.5909 -0.8408 24 1 -0.3634 -1.0236 -0.0914 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8900 27 1 3.8438 1.0399 -1.1067 28 1 3.9352 2.4656 -0.0450 29 1 5.1000 0.5945 0.8756 30 1 2.3029 1.8617 1.9984 31 1 2.3006 3.8819 0.3562 32 1 -0.5787 3.5871 1.3256 33 1 -0.0291 3.4249 -0.3596 34 1 -0.9390 5.6918 0.0643 35 1 0.7983 5.7616 -0.3156 36 1 -0.4134 5.7942 2.4858 37 1 0.4872 10.3447 3.2589 38 1 2.4659 6.0883 1.5160 39 1 1.9163 6.2508 3.2014 40 1 2.8261 3.9834 2.7775 41 1 1.0886 3.9132 3.1575 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173324983.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:08:37 Heat of formation + Delta-G solvation = -99.122291 kcal Electronic energy + Delta-G solvation = -18417.355312 eV Core-core repulsion = 15715.950221 eV Total energy + Delta-G solvation = -2701.405091 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.21497 -38.48606 -36.21370 -34.73509 -33.23390 -31.64062 -30.55585 -28.48698 -25.83436 -24.23502 -23.65401 -22.08980 -21.17178 -20.45978 -18.75121 -18.35642 -17.08054 -16.45179 -16.20548 -15.83814 -15.15101 -15.06779 -14.94345 -14.78049 -14.52264 -14.31418 -13.55431 -13.31825 -13.23400 -12.89875 -12.87944 -12.67168 -12.32998 -12.03364 -11.91756 -11.80333 -11.71095 -11.60246 -11.54812 -11.21059 -10.91643 -10.88592 -10.70760 -10.50234 -9.21122 -8.29567 -6.32253 1.28780 1.35451 1.46275 2.32681 3.05864 3.10933 3.56027 3.84890 3.94933 3.99946 4.14671 4.33628 4.40289 4.46048 4.50698 4.55687 4.64688 4.71404 4.74068 4.76052 4.80403 4.88461 4.90079 5.04948 5.13774 5.16422 5.23308 5.29755 5.39162 5.45095 5.48995 5.61645 5.62733 5.72390 5.82886 6.25704 6.34469 6.59336 6.75748 6.88254 7.33365 8.87614 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.036229 B = 0.005819 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.684053 B = 4811.020489 C = 5099.087300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 C 0.084 3.916 4 H 0.086 0.914 5 C 0.047 3.953 6 O -0.581 6.581 7 N -0.676 5.676 8 C 0.101 3.899 9 C -0.092 4.092 10 C -0.094 4.094 11 C 0.013 3.987 12 C -0.518 4.518 13 H 0.031 0.969 14 C 0.009 3.991 15 N -0.953 5.953 16 Si 0.951 3.049 17 H -0.267 1.267 18 H -0.301 1.301 19 H -0.247 1.247 20 C -0.114 4.114 21 C -0.114 4.114 22 H 0.050 0.950 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.068 0.932 26 H 0.058 0.942 27 H 0.063 0.937 28 H 0.039 0.961 29 H 0.394 0.606 30 H 0.347 0.653 31 H 0.041 0.959 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.046 0.954 35 H 0.046 0.954 36 H 0.019 0.981 37 H 0.264 0.736 38 H 0.052 0.948 39 H 0.032 0.968 40 H 0.067 0.933 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -21.091 -4.178 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.135 4.135 3 C -0.026 4.026 4 H 0.104 0.896 5 C -0.032 4.032 6 O -0.389 6.389 7 N -0.307 5.307 8 C -0.009 4.009 9 C -0.131 4.131 10 C -0.133 4.133 11 C -0.006 4.006 12 C -0.556 4.556 13 H 0.050 0.950 14 C -0.187 4.187 15 N -0.594 5.594 16 Si 0.778 3.222 17 H -0.193 1.193 18 H -0.229 1.229 19 H -0.171 1.171 20 C -0.152 4.152 21 C -0.151 4.151 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.243 0.757 30 H 0.167 0.833 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.086 0.914 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.591 -21.133 -4.040 22.230 hybrid contribution 1.603 1.117 0.477 2.011 sum 7.194 -20.016 -3.563 21.566 Atomic orbital electron populations 1.21635 0.95661 1.00809 1.01723 1.21292 0.95935 0.94490 1.01735 1.21874 0.91392 0.96509 0.92817 0.89595 1.22879 0.95345 0.93779 0.91203 1.86415 1.26867 1.71987 1.53618 1.60515 1.55642 1.07071 1.07484 1.21345 0.96531 0.87155 0.95851 1.21447 0.96680 0.94044 1.00882 1.21351 1.00123 0.94760 0.97036 1.19119 0.93242 0.93042 0.95192 1.21481 1.46699 0.91768 0.95617 0.95044 1.25896 0.94895 0.94856 1.03044 1.70060 1.52427 1.04242 1.32685 0.85808 0.78798 0.78767 0.78837 1.19346 1.22871 1.17121 1.21809 0.99181 0.95016 0.99213 1.21692 1.01400 0.94479 0.97573 0.93086 0.93380 0.92792 0.91345 0.92328 0.91884 0.94296 0.75671 0.83334 0.94098 0.92330 0.91520 0.93514 0.93491 0.96303 0.92680 0.92902 0.94944 0.91414 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 9.74 71.98 0.70 -2.06 16 2 C -0.10 -1.83 5.32 30.60 0.16 -1.66 16 3 C 0.08 1.71 2.22 44.92 0.10 1.81 16 4 H 0.09 1.78 7.24 -2.39 -0.02 1.77 16 5 C 0.05 0.82 6.69 71.98 0.48 1.30 16 6 O -0.58 -9.82 12.25 -148.98 -1.82 -11.64 16 7 N -0.68 -16.40 5.63 -469.47 -2.64 -19.04 16 8 C 0.10 2.88 2.28 44.91 0.10 2.98 16 9 C -0.09 -2.89 5.43 30.59 0.17 -2.73 16 10 C -0.09 -3.72 5.14 30.59 0.16 -3.56 16 11 C 0.01 0.60 1.69 -11.54 -0.02 0.58 16 12 C -0.52 -30.09 9.14 25.60 0.23 -29.85 16 13 H 0.03 2.02 7.99 -2.91 -0.02 1.99 16 14 C 0.01 0.56 5.45 84.66 0.46 1.02 16 15 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 16 Si 0.95 46.21 24.37 68.60 1.67 47.88 16 17 H -0.27 -12.33 6.87 99.48 0.68 -11.64 16 18 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 19 H -0.25 -11.23 6.53 99.48 0.65 -10.58 16 20 C -0.11 -4.73 4.68 30.61 0.14 -4.59 16 21 C -0.11 -3.67 5.18 30.61 0.16 -3.52 16 22 H 0.05 1.17 7.91 -2.39 -0.02 1.15 16 23 H 0.05 0.92 8.14 -2.39 -0.02 0.91 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 26 H 0.06 1.24 7.74 -2.39 -0.02 1.22 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.04 0.72 7.46 -2.39 -0.02 0.71 16 29 H 0.39 3.40 9.12 -74.06 -0.68 2.73 16 30 H 0.35 8.47 7.52 -89.69 -0.67 7.80 16 31 H 0.04 1.18 7.15 -2.39 -0.02 1.16 16 32 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.07 1.84 7.56 -2.39 -0.02 1.82 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 37 H 0.26 15.82 8.31 -92.70 -0.77 15.05 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.03 1.43 3.27 -2.39 -0.01 1.42 16 40 H 0.07 1.92 8.12 -2.39 -0.02 1.90 16 41 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -66.54 309.54 -0.08 -66.62 By element: Atomic # 1 Polarization: 17.48 SS G_CDS: -0.43 Total: 17.05 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 2.85 Total: -40.28 kcal Atomic # 7 Polarization: -77.28 SS G_CDS: -2.34 Total: -79.62 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -1.82 Total: -11.64 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.67 Total: 47.88 kcal Total: -66.54 -0.08 -66.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324983.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.501 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.621 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds