Wall clock time and date at job start Sun Mar 29 2020 23:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47004 * 2 1 4 4 H 1.09000 * 109.47213 * 304.99905 * 3 2 1 5 5 O 1.42899 * 109.47174 * 65.00169 * 3 2 1 6 6 C 1.53004 * 109.47259 * 184.99881 * 3 2 1 7 7 N 1.46897 * 109.47336 * 180.02562 * 6 3 2 8 8 C 1.46898 * 111.00210 * 179.97438 * 7 6 3 9 9 C 1.53002 * 109.47184 * 275.00106 * 8 7 6 10 10 C 1.52998 * 109.46944 * 299.99829 * 9 8 7 11 11 C 1.52994 * 109.47260 * 300.00042 * 10 9 8 12 12 C 1.50702 * 109.47509 * 180.02562 * 11 10 9 13 13 H 1.07993 * 120.00323 * 245.44746 * 12 11 10 14 14 C 1.37877 * 119.99577 * 65.44146 * 12 11 10 15 15 N 1.31513 * 120.00364 * 9.58031 * 14 12 11 16 16 Si 1.86805 * 119.99690 * 189.57686 * 14 12 11 17 17 H 1.48495 * 109.46895 * 94.99568 * 16 14 12 18 18 H 1.48507 * 109.46942 * 214.99130 * 16 14 12 19 19 H 1.48497 * 109.47131 * 334.99206 * 16 14 12 20 20 C 1.53002 * 109.47176 * 60.00100 * 11 10 9 21 21 C 1.52993 * 109.47359 * 154.99693 * 8 7 6 22 22 H 1.08998 * 109.46982 * 60.00025 * 1 2 3 23 23 H 1.09005 * 109.47035 * 299.99941 * 1 2 3 24 24 H 1.08997 * 109.47206 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46982 * 119.99974 * 2 1 3 26 26 H 1.08996 * 109.46933 * 240.00181 * 2 1 3 27 27 H 0.96705 * 114.00302 * 59.99708 * 5 3 2 28 28 H 1.09000 * 109.47027 * 300.00138 * 6 3 2 29 29 H 1.08999 * 109.46595 * 59.99763 * 6 3 2 30 30 H 1.00894 * 110.99760 * 303.95540 * 7 6 3 31 31 H 1.09004 * 109.46964 * 34.99728 * 8 7 6 32 32 H 1.09001 * 109.46846 * 59.99599 * 9 8 7 33 33 H 1.09001 * 109.46758 * 179.97438 * 9 8 7 34 34 H 1.09005 * 109.46884 * 180.02562 * 10 9 8 35 35 H 1.08996 * 109.46968 * 60.00330 * 10 9 8 36 36 H 1.09006 * 109.46832 * 300.00140 * 11 10 9 37 37 H 0.96998 * 120.00235 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.46846 * 180.02562 * 20 11 10 39 39 H 1.08989 * 109.47097 * 60.00108 * 20 11 10 40 40 H 1.08996 * 109.47597 * 180.02562 * 21 8 7 41 41 H 1.09005 * 109.47338 * 300.00392 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0545 2.8294 -0.1251 8 6 5.5181 2.8703 -0.2439 9 6 6.1469 2.7167 1.1424 10 6 5.6764 3.8589 2.0451 11 6 6.1014 5.1972 1.4378 12 6 5.6386 6.3223 2.3272 13 1 4.8962 7.0213 1.9717 14 6 6.1629 6.4590 3.5951 15 7 7.1952 5.7313 3.9618 16 14 5.4069 7.6778 4.7919 17 1 4.4247 6.9772 5.6576 18 1 6.4756 8.2709 5.6355 19 1 4.7197 8.7543 4.0342 20 6 5.4726 5.3508 0.0514 21 6 5.9432 4.2086 -0.8514 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 1.8933 -0.5138 0.8900 26 1 1.8932 -0.5138 -0.8900 27 1 2.0141 1.6542 2.0140 28 1 3.9994 0.9054 0.7161 29 1 3.8531 0.9570 -1.0571 30 1 3.6167 3.3680 -0.8573 31 1 5.8533 2.0566 -0.8871 32 1 5.8440 1.7633 1.5751 33 1 7.2329 2.7467 1.0541 34 1 6.1247 3.7497 3.0327 35 1 4.5904 3.8285 2.1334 36 1 7.1875 5.2276 1.3496 37 1 7.5642 5.8278 4.8536 38 1 5.7759 6.3041 -0.3814 39 1 4.3868 5.3205 0.1396 40 1 7.0291 4.2389 -0.9400 41 1 5.4952 4.3180 -1.8391 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173325756.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:48 Heat of formation + Delta-G solvation = -102.805178 kcal Electronic energy + Delta-G solvation = -18311.927732 eV Core-core repulsion = 15610.362939 eV Total energy + Delta-G solvation = -2701.564793 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.00528 -38.59867 -35.69785 -33.97620 -33.45310 -31.34890 -30.79499 -28.08018 -26.26732 -23.79542 -23.11034 -22.28820 -22.05549 -19.66555 -18.33693 -17.48952 -16.88521 -16.61421 -16.11020 -15.92250 -15.53389 -15.07323 -14.62201 -14.28457 -14.08282 -13.85766 -13.28009 -13.19741 -13.07132 -12.88845 -12.72807 -12.69239 -12.50082 -12.36350 -11.87668 -11.86632 -11.80854 -11.59537 -11.55801 -11.14833 -10.63987 -10.51480 -10.40367 -10.28662 -9.04047 -8.06461 -6.13132 1.40270 1.42384 1.51937 2.47152 3.18211 3.23838 3.76550 3.87851 4.07332 4.13309 4.19958 4.24986 4.33840 4.48560 4.64201 4.69741 4.75551 4.81872 4.92169 4.93638 4.95375 5.00682 5.04120 5.11765 5.14066 5.22131 5.34637 5.39553 5.43322 5.50340 5.65987 5.71581 5.82089 6.17162 6.22635 6.31873 6.52826 6.65376 6.99794 7.00751 7.52367 9.01769 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.025368 B = 0.006031 C = 0.005336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.498425 B = 4641.525903 C = 5245.682856 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.149 4.149 3 C 0.112 3.888 4 H 0.090 0.910 5 O -0.569 6.569 6 C 0.031 3.969 7 N -0.679 5.679 8 C 0.103 3.897 9 C -0.099 4.099 10 C -0.076 4.076 11 C 0.047 3.953 12 C -0.530 4.530 13 H 0.045 0.955 14 C 0.014 3.986 15 N -0.920 5.920 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.284 1.284 19 H -0.269 1.269 20 C -0.093 4.093 21 C -0.113 4.113 22 H 0.053 0.947 23 H 0.048 0.952 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.379 0.621 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.341 0.659 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.041 0.959 34 H 0.020 0.980 35 H 0.044 0.956 36 H -0.013 1.013 37 H 0.258 0.742 38 H 0.032 0.968 39 H 0.054 0.946 40 H 0.057 0.943 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.871 -12.583 -10.222 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.187 4.187 3 C 0.053 3.947 4 H 0.108 0.892 5 O -0.375 6.375 6 C -0.098 4.098 7 N -0.311 5.311 8 C -0.006 4.006 9 C -0.137 4.137 10 C -0.114 4.114 11 C 0.028 3.972 12 C -0.568 4.568 13 H 0.064 0.936 14 C -0.184 4.184 15 N -0.560 5.560 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.210 1.210 19 H -0.194 1.194 20 C -0.130 4.130 21 C -0.150 4.150 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.100 0.900 27 H 0.227 0.773 28 H 0.085 0.915 29 H 0.065 0.935 30 H 0.160 0.840 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.038 0.962 35 H 0.063 0.937 36 H 0.005 0.995 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.053 -12.156 -9.813 18.056 hybrid contribution 0.476 0.208 0.521 0.736 sum -8.577 -11.948 -9.292 17.397 Atomic orbital electron populations 1.21675 0.95114 1.01786 1.01828 1.22155 0.97030 0.96096 1.03397 1.21964 0.92017 0.93164 0.87593 0.89180 1.86570 1.76455 1.58317 1.16191 1.22743 0.96170 0.89951 1.00957 1.60216 1.04865 1.12115 1.53916 1.21343 0.87835 0.96317 0.95118 1.21490 0.98090 0.98004 0.96123 1.21074 0.98824 0.94583 0.96907 1.18596 0.93505 0.93069 0.91993 1.21623 1.22500 1.12802 0.99849 0.93650 1.25674 0.94911 0.97829 0.99982 1.70100 1.23320 1.42982 1.19594 0.85754 0.78309 0.79538 0.79338 1.20332 1.20965 1.19366 1.21353 0.99970 0.96084 0.95626 1.21692 1.00636 0.94504 0.98205 0.92817 0.93297 0.91823 0.91267 0.89979 0.77309 0.91510 0.93494 0.83991 0.93156 0.93108 0.94014 0.96162 0.93747 0.99453 0.93327 0.94885 0.92708 0.92439 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.81 71.98 0.71 -1.63 16 2 C -0.15 -2.35 5.61 30.59 0.17 -2.18 16 3 C 0.11 2.34 3.17 30.60 0.10 2.43 16 4 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 5 O -0.57 -15.30 12.74 -148.98 -1.90 -17.20 16 6 C 0.03 0.70 5.15 86.31 0.44 1.14 16 7 N -0.68 -19.52 4.69 -491.58 -2.31 -21.82 16 8 C 0.10 3.20 2.82 44.91 0.13 3.33 16 9 C -0.10 -3.77 5.53 30.59 0.17 -3.60 16 10 C -0.08 -3.67 4.88 30.59 0.15 -3.52 16 11 C 0.05 2.44 1.96 -11.54 -0.02 2.42 16 12 C -0.53 -30.82 8.48 25.60 0.22 -30.60 16 13 H 0.05 2.63 7.77 -2.91 -0.02 2.61 16 14 C 0.01 0.82 5.20 84.65 0.44 1.26 16 15 N -0.92 -55.94 12.16 21.45 0.26 -55.68 16 16 Si 0.94 45.80 29.55 68.60 2.03 47.83 16 17 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 20 C -0.09 -3.91 4.99 30.60 0.15 -3.76 16 21 C -0.11 -3.70 5.30 30.59 0.16 -3.54 16 22 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 23 H 0.05 0.91 7.82 -2.38 -0.02 0.89 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 27 H 0.38 8.67 9.05 -74.05 -0.67 8.00 16 28 H 0.07 1.58 7.43 -2.39 -0.02 1.56 16 29 H 0.05 0.89 8.06 -2.39 -0.02 0.87 16 30 H 0.34 9.24 8.19 -89.70 -0.73 8.50 16 31 H 0.05 1.34 7.80 -2.39 -0.02 1.32 16 32 H 0.05 1.77 7.45 -2.39 -0.02 1.76 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.02 1.11 6.91 -2.38 -0.02 1.09 16 35 H 0.04 2.20 7.60 -2.39 -0.02 2.18 16 36 H -0.01 -0.75 8.09 -2.38 -0.02 -0.77 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 2.33 7.48 -2.39 -0.02 2.31 16 40 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.00 8.12 -2.38 -0.02 1.98 16 Total: -1.00 -65.82 318.58 0.48 -65.33 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -0.42 Total: 19.78 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 2.81 Total: -38.24 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -2.04 Total: -77.50 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -1.90 Total: -17.20 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -65.82 0.48 -65.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325756.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.471 kcal (2) G-P(sol) polarization free energy of solvation -65.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds