Wall clock time and date at job start Sun Mar 29 2020 23:06:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.47136 * 2 1 4 4 H 1.09000 * 109.46715 * 55.00573 * 3 2 1 5 5 O 1.42897 * 109.47298 * 295.00261 * 3 2 1 6 6 C 1.52998 * 109.47113 * 175.00135 * 3 2 1 7 7 N 1.46892 * 109.47299 * 185.00476 * 6 3 2 8 8 C 1.46894 * 111.00365 * 179.97438 * 7 6 3 9 9 C 1.53005 * 109.47416 * 154.99774 * 8 7 6 10 10 C 1.53002 * 109.47271 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.46945 * 300.00268 * 10 9 8 12 12 C 1.50702 * 109.46933 * 299.99580 * 11 10 9 13 13 H 1.07994 * 119.99850 * 5.43130 * 12 11 10 14 14 C 1.37873 * 119.99618 * 185.42739 * 12 11 10 15 15 N 1.31521 * 120.00400 * 9.55221 * 14 12 11 16 16 Si 1.86800 * 119.99835 * 189.54905 * 14 12 11 17 17 H 1.48501 * 109.47290 * 94.99450 * 16 14 12 18 18 H 1.48503 * 109.47352 * 214.99403 * 16 14 12 19 19 H 1.48498 * 109.47058 * 334.99111 * 16 14 12 20 20 C 1.52996 * 109.47401 * 59.99926 * 11 10 9 21 21 C 1.53001 * 109.47206 * 274.99871 * 8 7 6 22 22 H 1.09000 * 109.46631 * 59.99747 * 1 2 3 23 23 H 1.08997 * 109.47032 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.46850 * 299.99685 * 1 2 3 25 25 H 1.09006 * 109.47272 * 240.00560 * 2 1 3 26 26 H 1.08997 * 109.47316 * 120.00491 * 2 1 3 27 27 H 0.96703 * 113.99993 * 299.99983 * 5 3 2 28 28 H 1.09003 * 109.47201 * 64.99588 * 6 3 2 29 29 H 1.09002 * 109.47209 * 305.00678 * 6 3 2 30 30 H 1.00906 * 111.00005 * 56.04417 * 7 6 3 31 31 H 1.09008 * 109.47169 * 34.99728 * 8 7 6 32 32 H 1.08998 * 109.46876 * 60.00387 * 9 8 7 33 33 H 1.08996 * 109.47124 * 299.99885 * 9 8 7 34 34 H 1.08999 * 109.46879 * 59.99559 * 10 9 8 35 35 H 1.08993 * 109.47057 * 180.02562 * 10 9 8 36 36 H 1.09004 * 109.46780 * 179.97438 * 11 10 9 37 37 H 0.96998 * 119.99661 * 180.02562 * 15 14 12 38 38 H 1.09008 * 109.47082 * 60.00143 * 20 11 10 39 39 H 1.09001 * 109.47366 * 179.97438 * 20 11 10 40 40 H 1.09002 * 109.46866 * 59.99767 * 21 8 7 41 41 H 1.08998 * 109.47440 * 299.99830 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6055 1.9815 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 3.5649 1.4444 0.1257 7 7 4.0446 2.8275 0.2462 8 6 5.5078 2.8684 0.3697 9 6 6.0235 4.2226 -0.1213 10 6 7.5475 4.2650 0.0068 11 6 7.9418 4.0699 1.4722 12 6 7.3369 5.1700 2.3058 13 1 6.6614 5.8809 1.8536 14 6 7.6460 5.2688 3.6458 15 7 8.6055 4.5278 4.1558 16 14 6.7020 6.4552 4.7371 17 1 5.5922 5.7331 5.4095 18 1 7.6168 7.0207 5.7611 19 1 6.1465 7.5550 3.9082 20 6 7.4261 2.7157 1.9632 21 6 5.9015 2.6736 1.8353 22 1 -0.3632 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 2.0141 1.6543 -2.0139 28 1 4.0030 0.9836 -0.7597 29 1 3.8571 0.8800 1.0112 30 1 3.6032 3.2970 1.0227 31 1 5.9457 2.0726 -0.2330 32 1 5.5857 5.0183 0.4814 33 1 5.7430 4.3614 -1.1654 34 1 7.9850 3.4692 -0.5961 35 1 7.9148 5.2298 -0.3426 36 1 9.0276 4.0996 1.5634 37 1 8.8226 4.5971 5.0987 38 1 7.8637 1.9199 1.3602 39 1 7.7074 2.5765 3.0071 40 1 5.5341 1.7088 2.1851 41 1 5.4637 3.4693 2.4380 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173325757.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 23:06:51 Heat of formation + Delta-G solvation = -85.847325 kcal Electronic energy + Delta-G solvation = -18162.988093 eV Core-core repulsion = 15462.158648 eV Total energy + Delta-G solvation = -2700.829445 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.64204 -37.56453 -34.40130 -32.85596 -31.99005 -29.58684 -29.15569 -26.59581 -24.57505 -22.70802 -21.57928 -21.39307 -20.49883 -18.75005 -16.56693 -15.90512 -15.70733 -15.24770 -14.65383 -14.32642 -14.25353 -13.78964 -13.21651 -13.08940 -12.64561 -12.42229 -12.25942 -12.01917 -11.62742 -11.39767 -11.32574 -11.14452 -11.01830 -10.87393 -10.78246 -10.53699 -10.34596 -10.07328 -9.84654 -9.70102 -9.12673 -8.93644 -8.66906 -8.25776 -7.80105 -5.97343 -3.96309 3.31230 3.39465 3.42768 4.19530 4.47663 4.56617 4.80805 4.96503 5.01517 5.28020 5.35751 5.40080 5.57204 5.62082 5.68226 5.76954 5.79409 5.84497 6.05708 6.07844 6.15631 6.35379 6.41618 6.48588 6.53707 6.71580 6.78106 6.92120 7.12374 7.18088 7.28410 7.46703 7.58376 7.68166 7.78309 7.84028 7.96264 8.07679 8.52913 9.06973 9.65616 11.12193 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.028723 B = 0.005483 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.602950 B = 5105.600564 C = 5461.474134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.095 0.905 5 O -0.549 6.549 6 C 0.027 3.973 7 N -0.680 5.680 8 C 0.094 3.906 9 C -0.092 4.092 10 C -0.107 4.107 11 C 0.042 3.958 12 C -0.502 4.502 13 H 0.057 0.943 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.880 3.120 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.274 1.274 20 C -0.097 4.097 21 C -0.129 4.129 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.369 0.631 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.339 0.661 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.031 0.969 35 H 0.048 0.952 36 H 0.030 0.970 37 H 0.258 0.742 38 H 0.017 0.983 39 H 0.070 0.930 40 H 0.027 0.973 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.154 -8.618 -7.587 16.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.195 4.195 3 C 0.050 3.950 4 H 0.112 0.888 5 O -0.354 6.354 6 C -0.103 4.103 7 N -0.309 5.309 8 C -0.015 4.015 9 C -0.130 4.130 10 C -0.145 4.145 11 C 0.023 3.977 12 C -0.540 4.540 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.708 3.292 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.199 1.199 20 C -0.136 4.136 21 C -0.168 4.168 22 H 0.079 0.921 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.216 0.784 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.157 0.843 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.067 0.933 38 H 0.035 0.965 39 H 0.088 0.912 40 H 0.046 0.954 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.373 -8.137 -7.695 15.961 hybrid contribution 0.007 -0.232 1.453 1.472 sum -11.366 -8.369 -6.241 15.433 Atomic orbital electron populations 1.21688 0.95188 1.01190 1.02410 1.22229 0.97045 0.97550 1.02637 1.21954 0.92961 0.91991 0.88141 0.88760 1.86591 1.76279 1.57303 1.15198 1.22671 0.95295 0.91532 1.00791 1.60634 1.06757 1.13874 1.49655 1.21580 0.85629 0.98299 0.95990 1.21348 0.96179 0.96453 0.99024 1.21559 0.94528 0.99055 0.99369 1.18700 0.96631 0.92770 0.89583 1.21162 1.26822 1.12341 0.93644 0.92520 1.24943 0.94802 0.95796 0.98321 1.69971 1.28689 1.41193 1.13137 0.86771 0.80087 0.81555 0.80790 1.20921 1.21456 1.19859 1.21387 0.92697 0.97824 1.01676 1.22069 0.99360 0.99265 0.96139 0.92073 0.93065 0.92790 0.91716 0.91212 0.78417 0.91290 0.94719 0.84300 0.92244 0.91286 0.93900 0.95028 0.93344 0.95173 0.93252 0.96471 0.91182 0.95396 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.81 37.16 0.36 -0.91 16 2 C -0.16 -1.41 5.61 -26.73 -0.15 -1.56 16 3 C 0.11 1.22 3.14 -26.73 -0.08 1.13 16 4 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 5 O -0.55 -6.65 12.82 -35.23 -0.45 -7.10 16 6 C 0.03 0.35 5.12 -3.83 -0.02 0.33 16 7 N -0.68 -10.63 6.20 -106.73 -0.66 -11.29 16 8 C 0.09 1.68 2.47 -67.71 -0.17 1.51 16 9 C -0.09 -1.78 5.30 -26.73 -0.14 -1.92 16 10 C -0.11 -2.24 5.42 -26.73 -0.14 -2.38 16 11 C 0.04 1.02 2.45 -91.77 -0.22 0.79 16 12 C -0.50 -13.34 6.64 -34.44 -0.23 -13.57 16 13 H 0.06 1.51 6.54 -52.49 -0.34 1.17 16 14 C 0.06 1.70 5.20 -17.82 -0.09 1.61 16 15 N -0.89 -25.51 12.16 55.43 0.67 -24.84 16 16 Si 0.88 21.21 29.55 -169.99 -5.02 16.18 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 20 C -0.10 -2.23 5.30 -26.71 -0.14 -2.37 16 21 C -0.13 -2.60 4.95 -26.70 -0.13 -2.73 16 22 H 0.06 0.55 7.82 -51.93 -0.41 0.15 16 23 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 24 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.37 3.32 9.05 45.56 0.41 3.73 16 28 H 0.07 0.85 8.06 -51.93 -0.42 0.43 16 29 H 0.03 0.46 7.44 -51.93 -0.39 0.07 16 30 H 0.34 5.41 8.47 -39.29 -0.33 5.08 16 31 H 0.06 1.05 7.80 -51.92 -0.41 0.65 16 32 H 0.07 1.45 6.52 -51.93 -0.34 1.11 16 33 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 38 H 0.02 0.36 8.14 -51.92 -0.42 -0.06 16 39 H 0.07 1.81 6.91 -51.93 -0.36 1.45 16 40 H 0.03 0.52 7.45 -51.93 -0.39 0.13 16 41 H 0.07 1.61 7.21 -51.93 -0.37 1.24 16 LS Contribution 316.39 15.07 4.77 4.77 Total: -1.00 -28.45 316.39 -8.55 -37.01 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.70 Total: 5.33 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: -1.16 Total: -20.06 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.01 Total: -36.13 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.45 Total: -7.10 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -28.45 -8.55 -37.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173325757.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.842 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds