Wall clock time and date at job start Sun Mar 29 2020 22:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47207 * 2 1 4 4 C 1.52998 * 109.47452 * 59.99558 * 3 2 1 5 5 C 1.52999 * 109.46976 * 299.99515 * 3 2 1 6 6 C 1.53007 * 109.47275 * 180.02562 * 3 2 1 7 7 C 1.52994 * 109.47046 * 179.97438 * 6 3 2 8 8 N 1.46904 * 109.47076 * 179.97438 * 7 6 3 9 9 C 1.47960 * 110.99975 * 190.00073 * 8 7 6 10 10 C 1.53940 * 86.18020 * 222.41827 * 9 8 7 11 11 O 1.42900 * 113.73337 * 269.26005 * 10 9 8 12 12 C 1.50694 * 113.73364 * 138.08016 * 10 9 8 13 13 H 1.08000 * 120.00563 * 1.89939 * 12 10 9 14 14 C 1.37885 * 119.99902 * 181.90102 * 12 10 9 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 10 17 17 H 1.48506 * 109.46985 * 179.97438 * 16 14 12 18 18 H 1.48494 * 109.47276 * 299.99832 * 16 14 12 19 19 H 1.48498 * 109.47150 * 60.00043 * 16 14 12 20 20 C 1.48189 * 111.06803 * 90.56485 * 8 7 6 21 21 H 1.08999 * 109.47667 * 300.00171 * 1 2 3 22 22 H 1.09005 * 109.47179 * 59.99930 * 1 2 3 23 23 H 1.09001 * 109.47330 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47178 * 239.99841 * 2 1 3 25 25 H 1.08997 * 109.47224 * 119.99694 * 2 1 3 26 26 H 1.09001 * 109.47155 * 180.02562 * 4 3 2 27 27 H 1.09001 * 109.47106 * 300.00512 * 4 3 2 28 28 H 1.09005 * 109.46511 * 60.00189 * 4 3 2 29 29 H 1.08994 * 109.47400 * 300.00422 * 5 3 2 30 30 H 1.09002 * 109.47129 * 60.00373 * 5 3 2 31 31 H 1.09003 * 109.47645 * 179.97438 * 5 3 2 32 32 H 1.08994 * 109.47018 * 59.99628 * 6 3 2 33 33 H 1.08995 * 109.46394 * 299.99713 * 6 3 2 34 34 H 1.09003 * 109.47110 * 59.99953 * 7 6 3 35 35 H 1.09005 * 109.47409 * 300.00082 * 7 6 3 36 36 H 1.09000 * 113.75922 * 108.10132 * 9 8 7 37 37 H 1.08996 * 113.85941 * 336.74802 * 9 8 7 38 38 H 0.96699 * 113.99865 * 178.10203 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 40 40 H 1.08996 * 113.76245 * 23.24297 * 20 8 7 41 41 H 1.08999 * 113.82580 * 251.80952 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.5299 2.1638 1.2491 5 6 1.5300 2.1637 -1.2493 6 6 3.5700 1.4425 -0.0006 7 6 4.0800 2.8850 -0.0013 8 7 5.5490 2.8850 -0.0013 9 6 6.0792 4.2454 0.2380 10 6 7.1011 3.9304 -0.8694 11 8 8.3134 3.3494 -0.3849 12 6 7.3374 5.0754 -1.8202 13 1 6.8317 6.0174 -1.6675 14 6 8.1994 4.9205 -2.8851 15 7 8.8157 3.7736 -3.0708 16 14 8.4919 6.3397 -4.0640 17 1 9.4540 5.9202 -5.1146 18 1 7.2066 6.7304 -4.6968 19 1 9.0481 7.4967 -3.3176 20 6 6.0817 2.8980 -1.3841 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8929 3.1916 1.2489 27 1 0.4399 2.1638 1.2491 28 1 1.8933 1.6500 2.1392 29 1 1.8933 1.6498 -2.1392 30 1 0.4400 2.1637 -1.2494 31 1 1.8930 3.1915 -1.2492 32 1 3.9329 0.9288 -0.8908 33 1 3.9336 0.9286 0.8891 34 1 3.7170 3.3991 0.8887 35 1 3.7162 3.3986 -0.8913 36 1 6.5260 4.3756 1.2237 37 1 5.3822 5.0422 -0.0214 38 1 8.9464 3.1232 -1.0801 39 1 9.4219 3.6646 -3.8202 40 1 5.3842 3.2986 -2.1197 41 1 6.5305 1.9536 -1.6919 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193715231.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:14:34 Heat of formation + Delta-G solvation = -40.434651 kcal Electronic energy + Delta-G solvation = -18211.746175 eV Core-core repulsion = 15512.885971 eV Total energy + Delta-G solvation = -2698.860204 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.20075 -37.92519 -34.26010 -32.06575 -31.57101 -28.92713 -27.26069 -26.71126 -25.19638 -24.94260 -23.09190 -20.71403 -18.58168 -18.24488 -17.16871 -15.51687 -15.17457 -14.85945 -14.64264 -14.45804 -13.98274 -13.75034 -13.49420 -12.96144 -12.57601 -12.20771 -12.12823 -11.90265 -11.68895 -11.53937 -11.35027 -11.27222 -11.10890 -10.97472 -10.84266 -10.54277 -10.41567 -10.27124 -10.21182 -9.89731 -9.81629 -9.21687 -8.60671 -8.15213 -7.71317 -6.22999 -4.32924 3.22219 3.27583 3.30092 4.27502 4.64161 4.86739 4.88797 4.99583 5.10478 5.26420 5.42092 5.47235 5.51247 5.70933 5.73226 5.78974 5.89401 5.97638 6.00138 6.02783 6.03563 6.06231 6.14377 6.18554 6.22582 6.33934 6.39126 6.47081 6.50019 6.63892 6.68727 6.75425 7.09749 7.30193 7.41585 7.78802 8.03782 8.10251 8.68513 9.36893 9.66204 10.82787 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037285 B = 0.005081 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.799869 B = 5509.070070 C = 5738.241948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.113 4.113 3 C -0.065 4.065 4 C -0.143 4.143 5 C -0.145 4.145 6 C -0.096 4.096 7 C 0.018 3.982 8 N -0.482 5.482 9 C 0.009 3.991 10 C 0.243 3.757 11 O -0.572 6.572 12 C -0.539 4.539 13 H 0.064 0.936 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.902 3.098 17 H -0.285 1.285 18 H -0.276 1.276 19 H -0.274 1.274 20 C -0.010 4.010 21 H 0.055 0.945 22 H 0.056 0.944 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.039 0.961 36 H 0.073 0.927 37 H 0.062 0.938 38 H 0.387 0.613 39 H 0.271 0.729 40 H 0.057 0.943 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.288 -4.359 3.667 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.150 4.150 3 C -0.065 4.065 4 C -0.200 4.200 5 C -0.202 4.202 6 C -0.134 4.134 7 C -0.111 4.111 8 N -0.204 5.204 9 C -0.120 4.120 10 C 0.202 3.798 11 O -0.383 6.383 12 C -0.577 4.577 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.538 5.538 16 Si 0.729 3.271 17 H -0.210 1.210 18 H -0.201 1.201 19 H -0.200 1.200 20 C -0.139 4.139 21 H 0.074 0.926 22 H 0.075 0.925 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.241 0.759 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.288 -4.911 4.566 14.884 hybrid contribution 0.031 1.245 -1.837 2.220 sum -13.257 -3.667 2.728 14.022 Atomic orbital electron populations 1.21888 0.96307 1.01069 1.01924 1.21555 0.95499 0.96122 1.01846 1.20563 0.95603 0.94890 0.95477 1.21961 1.00369 1.00551 0.97153 1.21979 1.00352 1.00688 0.97195 1.21472 0.92563 0.97163 1.02243 1.22748 0.91574 0.96543 1.00208 1.68490 1.06292 1.25031 1.20621 1.24077 0.97135 0.90051 1.00735 1.19762 0.82283 0.89243 0.88525 1.86042 1.29518 1.83353 1.39367 1.21631 1.26906 0.99194 1.09979 0.91820 1.25049 0.94755 0.95972 0.97269 1.69425 1.29344 1.23786 1.31241 0.86497 0.78167 0.82242 0.80185 1.21013 1.20112 1.19965 1.24735 0.98982 1.01424 0.88774 0.92585 0.92547 0.93296 0.92131 0.92142 0.92450 0.92885 0.92817 0.92795 0.92881 0.92369 0.92229 0.91727 0.92010 0.94274 0.90899 0.92000 0.75903 0.91925 0.92438 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.21 37.15 0.34 -1.09 16 2 C -0.11 -1.22 4.99 -26.74 -0.13 -1.35 16 3 C -0.06 -0.78 0.57 -154.51 -0.09 -0.87 16 4 C -0.14 -1.61 7.77 37.16 0.29 -1.32 16 5 C -0.15 -1.74 7.77 37.16 0.29 -1.45 16 6 C -0.10 -1.46 4.58 -26.73 -0.12 -1.58 16 7 C 0.02 0.31 4.09 -3.83 -0.02 0.30 16 8 N -0.48 -10.35 6.16 -238.02 -1.47 -11.81 16 9 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 10 C 0.24 6.30 1.40 -90.83 -0.13 6.17 16 11 O -0.57 -15.79 13.48 -35.23 -0.48 -16.26 16 12 C -0.54 -14.61 8.61 -34.44 -0.30 -14.91 16 13 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 14 C 0.07 1.91 5.40 -17.82 -0.10 1.81 16 15 N -0.90 -24.36 11.20 55.43 0.62 -23.74 16 16 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 C -0.01 -0.24 7.37 -2.63 -0.02 -0.26 16 21 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 22 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 27 H 0.05 0.52 6.43 -51.93 -0.33 0.19 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 31 H 0.06 0.74 6.43 -51.93 -0.33 0.41 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.06 1.01 6.37 -51.93 -0.33 0.68 16 35 H 0.04 0.69 5.68 -51.93 -0.29 0.40 16 36 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.06 1.31 7.88 -51.93 -0.41 0.90 16 38 H 0.39 10.79 6.60 45.56 0.30 11.09 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.06 1.36 7.44 -51.93 -0.39 0.97 16 41 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 312.72 15.07 4.71 4.71 Total: -1.00 -27.52 312.72 -8.10 -35.62 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.47 Total: 10.30 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 0.00 Total: -14.37 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.85 Total: -35.55 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.48 Total: -16.26 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -27.52 -8.10 -35.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193715231.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.812 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds