Wall clock time and date at job start Sun Mar 29 2020 22:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47283 * 2 1 4 4 C 1.52997 * 109.46923 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47182 * 180.02562 * 4 3 2 6 6 C 1.36938 * 120.00395 * 270.00524 * 5 4 3 7 7 H 1.07996 * 119.99556 * 326.48328 * 6 5 4 8 8 C 1.38813 * 120.00130 * 146.47796 * 6 5 4 9 9 N 1.31615 * 120.00192 * 334.90001 * 8 6 5 10 10 Si 1.86805 * 119.99603 * 154.89831 * 8 6 5 11 11 H 1.48497 * 109.47082 * 90.00290 * 10 8 6 12 12 H 1.48496 * 109.46816 * 210.00232 * 10 8 6 13 13 H 1.48494 * 109.47285 * 330.00294 * 10 8 6 14 14 C 1.46500 * 119.99889 * 89.99628 * 5 4 3 15 15 C 1.53009 * 109.46959 * 95.75594 * 14 5 4 16 16 C 1.53176 * 109.53932 * 295.95892 * 15 14 5 17 17 C 1.53094 * 109.16217 * 183.15272 * 16 15 14 18 18 O 1.42902 * 109.41494 * 57.60405 * 17 16 15 19 19 C 1.42896 * 114.10168 * 298.84454 * 18 17 16 20 20 C 1.53097 * 109.41697 * 61.15534 * 19 18 17 21 21 H 1.09007 * 109.46961 * 59.99384 * 1 2 3 22 22 H 1.08999 * 109.47727 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47206 * 300.00158 * 1 2 3 24 24 H 1.09002 * 109.46810 * 240.00396 * 2 1 3 25 25 H 1.09000 * 109.47115 * 120.00227 * 2 1 3 26 26 H 1.09002 * 109.46874 * 60.00436 * 3 2 1 27 27 H 1.09000 * 109.47231 * 300.00157 * 3 2 1 28 28 H 1.09002 * 109.46902 * 60.00560 * 4 3 2 29 29 H 1.09000 * 109.47383 * 300.00171 * 4 3 2 30 30 H 0.97001 * 120.00094 * 179.97438 * 9 8 6 31 31 H 1.08999 * 109.47480 * 335.76063 * 14 5 4 32 32 H 1.08997 * 109.47639 * 215.75274 * 14 5 4 33 33 H 1.09002 * 109.61483 * 56.17368 * 15 14 5 34 34 H 1.09002 * 109.52102 * 303.05521 * 16 15 14 35 35 H 1.08999 * 109.53042 * 63.24444 * 16 15 14 36 36 H 1.09003 * 109.47968 * 297.62224 * 17 16 15 37 37 H 1.08995 * 109.48106 * 177.58804 * 17 16 15 38 38 H 1.09008 * 109.48149 * 301.17983 * 19 18 17 39 39 H 1.08997 * 109.49668 * 181.14703 * 19 18 17 40 40 H 1.08994 * 109.52486 * 182.48622 * 20 19 18 41 41 H 1.09003 * 109.51821 * 62.29734 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2871 3.4696 -1.1843 7 1 4.6392 2.9155 -2.0419 8 6 4.0663 4.8364 -1.2839 9 7 3.2107 5.4254 -0.4756 10 14 4.9837 5.8397 -2.5650 11 1 4.1973 5.8724 -3.8243 12 1 5.1751 7.2248 -2.0649 13 1 6.3078 5.2197 -2.8243 14 6 4.3020 3.5138 1.2703 15 6 5.7818 3.3937 1.6403 16 6 6.1314 1.9222 1.8829 17 6 7.5924 1.8197 2.3287 18 8 7.7865 2.6075 3.5051 19 6 7.5203 3.9999 3.3255 20 6 6.0564 4.1900 2.9197 21 1 -0.3633 0.5140 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8900 26 1 1.6767 1.9563 0.8901 27 1 1.6767 1.9564 -0.8900 28 1 3.9336 0.9285 -0.8892 29 1 3.9330 0.9287 0.8908 30 1 3.0567 6.3806 -0.5449 31 1 3.6939 3.0605 2.0531 32 1 4.0374 4.5662 1.1682 33 1 6.3949 3.7850 0.8285 34 1 5.4840 1.5175 2.6608 35 1 5.9915 1.3577 0.9611 36 1 8.2416 2.1873 1.5340 37 1 7.8346 0.7791 2.5441 38 1 8.1685 4.3960 2.5437 39 1 7.7106 4.5300 4.2586 40 1 5.8628 5.2473 2.7392 41 1 5.4075 3.8310 3.7185 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202597103.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:28 Heat of formation + Delta-G solvation = -57.624220 kcal Electronic energy + Delta-G solvation = -18521.771262 eV Core-core repulsion = 15822.165663 eV Total energy + Delta-G solvation = -2699.605599 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.93707 -36.41835 -34.33586 -32.85084 -31.14363 -30.54691 -28.08963 -26.36723 -24.10579 -23.00447 -22.52539 -20.77107 -19.84098 -19.34424 -16.62916 -15.65242 -15.55924 -14.87388 -14.77359 -14.35024 -14.05380 -13.67858 -13.44233 -13.24055 -12.82368 -12.26267 -12.07597 -11.89352 -11.64403 -11.22239 -11.07955 -10.87758 -10.77135 -10.57238 -10.50981 -10.36078 -10.26543 -10.07698 -10.01514 -9.67059 -9.53799 -9.45150 -9.00581 -8.45979 -6.56154 -5.74058 -3.27076 3.35631 3.44012 3.47251 4.22242 4.50603 5.19831 5.30670 5.37150 5.46419 5.47789 5.50259 5.58811 5.64407 5.69162 5.79973 5.86922 6.00959 6.08582 6.09403 6.22755 6.35078 6.37772 6.41192 6.44072 6.51119 6.55077 6.63934 6.70993 6.73794 6.84800 6.97584 7.11055 7.29274 7.31710 7.54069 7.75465 7.86443 8.52864 9.22426 9.87640 10.44095 11.23800 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013539 B = 0.009885 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.613027 B = 2831.897470 C = 4374.555139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.135 4.135 4 C 0.146 3.854 5 N -0.583 5.583 6 C -0.253 4.253 7 H 0.060 0.940 8 C 0.009 3.991 9 N -0.884 5.884 10 Si 0.889 3.111 11 H -0.287 1.287 12 H -0.290 1.290 13 H -0.279 1.279 14 C 0.150 3.850 15 C -0.105 4.105 16 C -0.140 4.140 17 C 0.060 3.940 18 O -0.392 6.392 19 C 0.063 3.937 20 C -0.147 4.147 21 H 0.051 0.949 22 H 0.043 0.957 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.253 0.747 31 H 0.021 0.979 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.069 0.931 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.019 -6.085 5.059 8.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.020 3.980 5 N -0.303 5.303 6 C -0.383 4.383 7 H 0.077 0.923 8 C -0.191 4.191 9 N -0.527 5.527 10 Si 0.718 3.282 11 H -0.214 1.214 12 H -0.216 1.216 13 H -0.205 1.205 14 C 0.024 3.976 15 C -0.125 4.125 16 C -0.177 4.177 17 C -0.016 4.016 18 O -0.311 6.311 19 C -0.014 4.014 20 C -0.186 4.186 21 H 0.070 0.930 22 H 0.062 0.938 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.114 0.886 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.102 0.898 40 H 0.088 0.912 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.023 -5.993 5.231 8.510 hybrid contribution 0.235 0.790 -0.967 1.271 sum 3.258 -5.203 4.264 7.475 Atomic orbital electron populations 1.21761 0.96853 1.00345 1.01656 1.21536 0.95068 0.98730 1.00790 1.22198 0.99447 0.93822 1.02015 1.20988 0.91290 0.87708 0.98018 1.43870 1.74303 1.09792 1.02299 1.19003 1.37712 0.90977 0.90597 0.92275 1.24993 0.97428 0.98540 0.98106 1.70002 1.32227 1.10109 1.40411 0.86521 0.80432 0.79696 0.81524 1.21431 1.21588 1.20500 1.20971 0.89580 1.01450 0.85611 1.21775 1.02292 0.93158 0.95312 1.22179 0.95292 0.98911 1.01350 1.22615 0.96786 0.94862 0.87371 1.87828 1.89210 1.18966 1.35138 1.22550 0.95955 0.82183 1.00694 1.22170 0.96166 1.01218 0.99018 0.92962 0.93753 0.93137 0.92774 0.93013 0.93160 0.91974 0.94334 0.94725 0.93733 0.96037 0.88629 0.91383 0.92434 0.90547 0.93713 0.89915 0.93699 0.89797 0.91248 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.91 37.16 0.37 -1.72 16 2 C -0.12 -1.92 5.93 -26.73 -0.16 -2.07 16 3 C -0.13 -2.64 5.54 -26.73 -0.15 -2.79 16 4 C 0.15 3.01 4.77 -4.04 -0.02 2.99 16 5 N -0.58 -13.93 2.17 -173.24 -0.38 -14.31 16 6 C -0.25 -6.73 9.44 -15.06 -0.14 -6.87 16 7 H 0.06 1.59 7.95 -52.49 -0.42 1.17 16 8 C 0.01 0.25 4.95 -17.43 -0.09 0.16 16 9 N -0.88 -24.94 11.36 55.49 0.63 -24.31 16 10 Si 0.89 21.32 29.62 -169.99 -5.04 16.28 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 14 C 0.15 3.41 4.78 -4.04 -0.02 3.40 16 15 C -0.10 -2.04 2.46 -90.43 -0.22 -2.27 16 16 C -0.14 -2.42 4.38 -26.59 -0.12 -2.54 16 17 C 0.06 0.93 6.84 37.21 0.25 1.19 16 18 O -0.39 -6.49 10.76 -35.23 -0.38 -6.87 16 19 C 0.06 0.96 6.84 37.21 0.25 1.21 16 20 C -0.15 -2.50 5.42 -26.59 -0.14 -2.65 16 21 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 23 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.04 0.79 8.04 -51.93 -0.42 0.37 16 29 H 0.03 0.66 6.72 -51.93 -0.35 0.31 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 31 H 0.02 0.47 8.03 -51.93 -0.42 0.06 16 32 H 0.10 2.49 5.37 -51.93 -0.28 2.21 16 33 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.38 6.64 -51.93 -0.35 1.04 16 36 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.04 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -27.85 319.69 -8.22 -36.07 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.70 Total: 0.27 kcal Atomic # 6 Polarization: -11.78 SS G_CDS: -0.18 Total: -11.95 kcal Atomic # 7 Polarization: -38.88 SS G_CDS: 0.25 Total: -38.62 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -0.38 Total: -6.87 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.04 Total: 16.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.85 -8.22 -36.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202597103.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.553 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds