Wall clock time and date at job start Sun Mar 29 2020 22:44:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47460 * 2 1 4 4 C 1.52994 * 109.47482 * 179.97438 * 3 2 1 5 5 N 1.46496 * 109.47497 * 184.60832 * 4 3 2 6 6 C 1.36931 * 120.00224 * 275.07266 * 5 4 3 7 7 H 1.08004 * 120.00033 * 318.91590 * 6 5 4 8 8 C 1.38814 * 120.00427 * 138.91781 * 6 5 4 9 9 N 1.31622 * 120.00179 * 159.09725 * 8 6 5 10 10 Si 1.86800 * 119.99587 * 339.10250 * 8 6 5 11 11 H 1.48499 * 109.47219 * 95.22616 * 10 8 6 12 12 H 1.48503 * 109.46877 * 215.22244 * 10 8 6 13 13 H 1.48492 * 109.47416 * 335.22706 * 10 8 6 14 14 C 1.46502 * 119.99834 * 95.07094 * 5 4 3 15 15 C 1.52998 * 109.47419 * 94.62623 * 14 5 4 16 16 C 1.52998 * 112.99954 * 183.99646 * 15 14 5 17 17 C 1.53001 * 109.46951 * 179.53805 * 16 15 14 18 18 C 1.54033 * 113.81468 * 315.82258 * 15 14 5 19 19 O 1.44453 * 85.42479 * 91.80661 * 18 15 14 20 20 C 1.44175 * 93.37853 * 24.08782 * 19 18 15 21 21 H 1.08995 * 109.47514 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47100 * 300.00264 * 1 2 3 23 23 H 1.09005 * 109.47120 * 59.99421 * 1 2 3 24 24 H 1.09004 * 109.46433 * 239.99997 * 2 1 3 25 25 H 1.08997 * 109.46747 * 120.00070 * 2 1 3 26 26 H 1.09000 * 109.47179 * 59.99785 * 3 2 1 27 27 H 1.09000 * 109.46986 * 300.00273 * 3 2 1 28 28 H 1.09001 * 109.46795 * 64.60922 * 4 3 2 29 29 H 1.08995 * 109.47360 * 304.61426 * 4 3 2 30 30 H 0.97002 * 119.99685 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47021 * 334.62806 * 14 5 4 32 32 H 1.09004 * 109.47123 * 214.63042 * 14 5 4 33 33 H 1.08995 * 109.47332 * 299.53841 * 16 15 14 34 34 H 1.09000 * 109.47138 * 59.54168 * 16 15 14 35 35 H 1.08997 * 109.47230 * 180.02562 * 17 16 15 36 36 H 1.09005 * 109.47008 * 300.00043 * 17 16 15 37 37 H 1.08998 * 109.47522 * 59.99787 * 17 16 15 38 38 H 1.08997 * 113.86388 * 205.90915 * 18 15 14 39 39 H 1.09000 * 113.86811 * 337.62457 * 18 15 14 40 40 H 1.08999 * 113.86854 * 221.76521 * 20 19 18 41 41 H 1.08999 * 113.86575 * 90.05725 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8191 0.1116 6 6 4.1883 3.5921 -1.0111 7 1 4.5840 3.1627 -1.9197 8 6 3.8114 4.9278 -0.9817 9 7 4.2925 5.7672 -1.8742 10 14 2.6217 5.5339 0.3246 11 1 3.3855 6.0963 1.4672 12 1 1.7474 6.5866 -0.2523 13 1 1.7864 4.4009 0.7974 14 6 4.4078 3.3689 1.4239 15 6 5.9084 3.1956 1.6664 16 6 6.3461 3.6558 3.0583 17 6 7.8520 3.4368 3.2177 18 6 6.4457 1.8066 1.2729 19 8 6.7176 2.4041 -0.0139 20 6 6.7896 3.7391 0.5258 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 1.8933 -0.5139 -0.8901 25 1 1.8933 -0.5138 0.8900 26 1 1.6768 1.9563 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 3.9337 1.0016 -0.9276 29 1 3.9331 0.8588 0.8466 30 1 4.0288 6.7005 -1.8538 31 1 3.8513 2.8414 2.1986 32 1 4.1550 4.4288 1.4528 33 1 6.1182 4.7147 3.1793 34 1 5.8132 3.0805 3.8154 35 1 8.1638 3.7642 4.2095 36 1 8.0799 2.3777 3.0968 37 1 8.3850 4.0119 2.4606 38 1 7.3410 1.5092 1.8189 39 1 5.6820 1.0294 1.2471 40 1 6.2980 4.4913 -0.0911 41 1 7.7900 4.0330 0.8434 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202962686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:30 Heat of formation + Delta-G solvation = -16.642759 kcal Electronic energy + Delta-G solvation = -19118.736110 eV Core-core repulsion = 16420.907600 eV Total energy + Delta-G solvation = -2697.828510 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.66712 -37.79055 -35.48944 -34.71174 -33.46537 -30.51225 -29.12802 -27.33129 -26.56362 -25.56033 -24.21872 -22.41332 -21.58587 -19.64720 -18.47941 -17.44725 -17.08210 -16.62603 -16.25925 -16.11433 -15.67052 -14.84716 -14.79253 -14.59410 -14.42750 -14.03475 -13.77328 -13.43706 -13.29681 -13.04105 -12.73149 -12.69552 -12.35726 -12.16090 -12.08007 -11.85615 -11.77430 -11.68587 -11.53339 -11.27820 -10.93482 -10.89717 -10.51231 -10.10909 -8.56226 -8.09825 -5.46966 1.29000 1.41287 1.51845 2.46647 3.05601 3.17979 3.41416 3.48334 4.00094 4.15308 4.20721 4.26182 4.28975 4.38666 4.42330 4.54699 4.62937 4.67346 4.73672 4.83033 4.87953 4.92705 5.00776 5.05304 5.07698 5.10804 5.13923 5.19536 5.33071 5.38879 5.40623 5.49426 5.51902 5.58096 5.63358 5.68362 6.06899 6.33027 7.11069 7.73801 8.17972 9.10595 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.010757 C = 0.008204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.295516 B = 2602.372806 C = 3412.276723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.133 4.133 4 C 0.155 3.845 5 N -0.604 5.604 6 C -0.210 4.210 7 H 0.024 0.976 8 C -0.020 4.020 9 N -0.953 5.953 10 Si 0.931 3.069 11 H -0.277 1.277 12 H -0.318 1.318 13 H -0.254 1.254 14 C 0.153 3.847 15 C -0.136 4.136 16 C -0.113 4.113 17 C -0.152 4.152 18 C 0.045 3.955 19 O -0.388 6.388 20 C 0.043 3.957 21 H 0.069 0.931 22 H 0.051 0.949 23 H 0.042 0.958 24 H 0.059 0.941 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.031 0.969 28 H 0.030 0.970 29 H 0.067 0.933 30 H 0.257 0.743 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.055 0.945 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.429 -9.436 12.683 15.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.173 4.173 4 C 0.030 3.970 5 N -0.325 5.325 6 C -0.341 4.341 7 H 0.042 0.958 8 C -0.215 4.215 9 N -0.599 5.599 10 Si 0.761 3.239 11 H -0.204 1.204 12 H -0.248 1.248 13 H -0.178 1.178 14 C 0.028 3.972 15 C -0.138 4.138 16 C -0.151 4.151 17 C -0.209 4.209 18 C -0.031 4.031 19 O -0.307 6.307 20 C -0.033 4.033 21 H 0.088 0.912 22 H 0.070 0.930 23 H 0.061 0.939 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.091 0.909 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.079 0.921 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 0.445 -9.422 12.352 15.542 hybrid contribution -0.584 1.189 -0.111 1.329 sum -0.139 -8.233 12.241 14.753 Atomic orbital electron populations 1.21754 0.95559 1.01999 1.01280 1.21452 0.96146 0.95493 1.02248 1.22119 0.98123 0.96889 1.00123 1.21023 0.91796 0.84910 0.99263 1.44004 1.74504 1.11523 1.02436 1.18279 1.33027 0.91786 0.91004 0.95788 1.25983 0.99679 0.96966 0.98840 1.70009 1.45884 1.03625 1.40343 0.86034 0.80956 0.77440 0.79509 1.20418 1.24757 1.17829 1.20992 0.91808 0.97070 0.87357 1.24180 0.97994 0.96227 0.95432 1.21455 0.97532 1.01186 0.94929 1.21921 0.94752 1.02196 1.01994 1.24196 0.99385 0.95644 0.83910 1.89725 1.93402 1.19979 1.27548 1.23957 0.98092 0.87067 0.94212 0.91203 0.93007 0.93873 0.92200 0.90774 0.93632 0.94971 0.95191 0.91453 0.93371 0.90877 0.95072 0.92659 0.89886 0.91012 0.91608 0.93383 0.88769 0.89806 0.92146 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.91 71.98 0.71 -2.81 16 2 C -0.12 -3.07 5.93 30.59 0.18 -2.89 16 3 C -0.13 -4.71 5.51 30.59 0.17 -4.55 16 4 C 0.15 5.94 4.83 86.38 0.42 6.36 16 5 N -0.60 -27.45 1.02 -702.01 -0.71 -28.17 16 6 C -0.21 -11.83 7.38 84.03 0.62 -11.21 16 7 H 0.02 1.60 8.06 -2.91 -0.02 1.57 16 8 C -0.02 -1.14 4.82 84.86 0.41 -0.73 16 9 N -0.95 -60.09 13.97 21.65 0.30 -59.78 16 10 Si 0.93 46.30 25.11 68.60 1.72 48.02 16 11 H -0.28 -13.08 6.70 99.48 0.67 -12.42 16 12 H -0.32 -16.43 7.11 99.48 0.71 -15.72 16 13 H -0.25 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.15 6.13 4.35 86.38 0.38 6.50 16 15 C -0.14 -4.71 1.38 -51.48 -0.07 -4.79 16 16 C -0.11 -2.98 5.71 30.59 0.17 -2.81 16 17 C -0.15 -3.32 9.14 71.98 0.66 -2.66 16 18 C 0.04 1.46 7.65 72.30 0.55 2.01 16 19 O -0.39 -17.00 11.07 -148.98 -1.65 -18.65 16 20 C 0.04 1.81 7.49 72.30 0.54 2.35 16 21 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 22 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 23 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 24 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 27 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.03 1.25 8.08 -2.39 -0.02 1.23 16 29 H 0.07 2.17 6.25 -2.39 -0.01 2.15 16 30 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.07 2.50 8.04 -2.38 -0.02 2.48 16 32 H 0.03 1.41 3.42 -2.38 -0.01 1.40 16 33 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.31 6.07 -2.38 -0.01 1.30 16 37 H 0.05 1.15 6.08 -2.39 -0.01 1.14 16 38 H 0.09 2.47 5.81 -2.39 -0.01 2.46 16 39 H 0.08 2.61 5.57 -2.39 -0.01 2.60 16 40 H 0.06 3.16 6.31 -2.39 -0.02 3.15 16 41 H 0.08 2.89 5.85 -2.39 -0.01 2.87 16 Total: -1.00 -67.11 305.46 5.35 -61.76 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: 0.94 Total: 12.04 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: 4.74 Total: -15.22 kcal Atomic # 7 Polarization: -87.54 SS G_CDS: -0.41 Total: -87.95 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -1.65 Total: -18.65 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.72 Total: 48.02 kcal Total: -67.11 5.35 -61.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202962686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.121 kcal (2) G-P(sol) polarization free energy of solvation -67.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds