Wall clock time and date at job start Sun Mar 29 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46615 * 2 1 4 4 C 1.53000 * 109.47330 * 65.00322 * 3 2 1 5 5 C 1.53003 * 109.46788 * 186.41498 * 4 3 2 6 6 C 1.53005 * 109.46831 * 185.00482 * 3 2 1 7 7 O 1.42898 * 109.47058 * 173.55174 * 6 3 2 8 8 C 1.42902 * 113.99928 * 179.97438 * 7 6 3 9 9 C 1.53941 * 113.73166 * 111.23143 * 8 7 6 10 10 N 1.48196 * 86.09766 * 90.78428 * 9 8 7 11 11 C 1.46899 * 111.07062 * 137.52411 * 10 9 8 12 12 C 1.50703 * 109.47215 * 70.56198 * 11 10 9 13 13 H 1.07998 * 119.99898 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99779 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99864 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47098 * 60.00327 * 16 14 12 18 18 H 1.48498 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47123 * 300.00147 * 16 14 12 20 20 C 1.47958 * 90.79893 * 24.59933 * 10 9 8 21 21 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47165 * 299.99536 * 1 2 3 23 23 H 1.08994 * 109.47444 * 60.00346 * 1 2 3 24 24 H 1.08998 * 109.46682 * 240.00263 * 2 1 3 25 25 H 1.08993 * 109.46946 * 119.99826 * 2 1 3 26 26 H 1.09002 * 109.47457 * 304.99874 * 3 2 1 27 27 H 1.09002 * 109.47052 * 306.41484 * 4 3 2 28 28 H 1.08993 * 109.46878 * 66.41568 * 4 3 2 29 29 H 1.08999 * 109.47416 * 291.68202 * 5 4 3 30 30 H 1.09000 * 109.47305 * 51.68885 * 5 4 3 31 31 H 1.09008 * 109.46522 * 171.68153 * 5 4 3 32 32 H 1.09001 * 109.47539 * 53.54774 * 6 3 2 33 33 H 1.09005 * 109.46886 * 293.55150 * 6 3 2 34 34 H 1.09002 * 112.94129 * 339.66740 * 8 7 6 35 35 H 1.08994 * 113.76035 * 205.05883 * 9 8 7 36 36 H 1.08996 * 113.75608 * 336.43176 * 9 8 7 37 37 H 1.08994 * 109.46781 * 190.56458 * 11 10 9 38 38 H 1.09002 * 109.46559 * 310.56652 * 11 10 9 39 39 H 0.97003 * 119.99607 * 179.97438 * 15 14 12 40 40 H 1.09001 * 113.75745 * 221.08177 * 20 10 9 41 41 H 1.09002 * 113.75737 * 89.71960 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0034 3.6102 1.2419 6 6 3.5648 1.4444 -0.1258 7 8 4.0286 2.7876 -0.2768 8 6 5.4475 2.9018 -0.4028 9 6 5.9113 3.3485 -1.8010 10 7 5.8242 4.7320 -1.2768 11 6 6.9764 5.5341 -1.7093 12 6 6.8713 5.8083 -3.1874 13 1 6.0322 5.4254 -3.7493 14 6 7.8457 6.5489 -3.8221 15 7 8.8672 7.0156 -3.1378 16 14 7.7150 6.8895 -5.6542 17 1 6.4607 7.6348 -5.9309 18 1 8.8798 7.7002 -6.0913 19 1 7.7008 5.6037 -6.3969 20 6 6.0089 4.2415 0.1068 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6053 1.9816 -0.8418 27 1 0.5597 2.0251 1.4527 28 1 2.1601 1.6583 2.1400 29 1 3.0882 3.7158 1.2452 30 1 1.5987 4.0450 0.3279 31 1 1.5853 4.1267 2.1059 32 1 3.8583 0.8586 -0.9969 33 1 4.0039 1.0070 0.7709 34 1 5.9794 2.0300 -0.0219 35 1 6.9258 3.0356 -2.0479 36 1 5.1935 3.1314 -2.5920 37 1 6.9869 6.4780 -1.1644 38 1 7.8969 4.9868 -1.5059 39 1 9.5529 7.5363 -3.5845 40 1 5.3689 4.7364 0.8372 41 1 7.0520 4.1902 0.4190 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204938012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:15 Heat of formation + Delta-G solvation = -32.526606 kcal Electronic energy + Delta-G solvation = -17773.719998 eV Core-core repulsion = 15075.202713 eV Total energy + Delta-G solvation = -2698.517285 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.42919 -37.75593 -35.32527 -32.75739 -31.63356 -29.27765 -28.16876 -25.56615 -24.89712 -23.69520 -22.68900 -21.62573 -20.03518 -19.11125 -16.60463 -16.18916 -15.97625 -15.37771 -14.70164 -14.41614 -14.28784 -13.81367 -13.68884 -13.23532 -12.88126 -12.50256 -12.39779 -11.98519 -11.96177 -11.75452 -11.58198 -11.16699 -11.03552 -10.96310 -10.78812 -10.68889 -10.54202 -10.43940 -10.33337 -10.11914 -9.52761 -9.13560 -8.98974 -8.44611 -7.62241 -6.01811 -4.03198 3.34817 3.38290 3.42134 3.74065 4.44550 4.68670 4.75777 4.84544 5.01758 5.08879 5.14016 5.32559 5.34117 5.36947 5.38849 5.48299 5.57981 5.67318 5.75380 5.81351 5.84163 5.88362 6.00371 6.07621 6.15887 6.20632 6.24192 6.28455 6.37001 6.43991 6.57072 6.77745 6.83141 7.25224 7.60171 7.69911 7.94165 8.19229 8.49049 9.04522 9.61111 11.09547 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037189 B = 0.004380 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.738195 B = 6390.558078 C = 6681.627883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.113 4.113 5 C -0.153 4.153 6 C 0.064 3.936 7 O -0.343 6.343 8 C 0.053 3.947 9 C 0.003 3.997 10 N -0.466 5.466 11 C 0.158 3.842 12 C -0.508 4.508 13 H 0.061 0.939 14 C 0.055 3.945 15 N -0.900 5.900 16 Si 0.899 3.101 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.002 4.002 21 H 0.052 0.948 22 H 0.057 0.943 23 H 0.055 0.945 24 H 0.062 0.938 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.032 0.968 38 H -0.004 1.004 39 H 0.262 0.738 40 H 0.083 0.917 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.073 -13.836 8.513 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.151 4.151 5 C -0.210 4.210 6 C -0.013 4.013 7 O -0.261 6.261 8 C -0.005 4.005 9 C -0.127 4.127 10 N -0.189 5.189 11 C 0.032 3.968 12 C -0.547 4.547 13 H 0.079 0.921 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.201 1.201 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.131 4.131 21 H 0.071 0.929 22 H 0.076 0.924 23 H 0.074 0.926 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.098 0.902 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.050 0.950 38 H 0.014 0.986 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.580 -13.129 8.315 19.994 hybrid contribution 1.116 -0.328 -0.899 1.470 sum -11.465 -13.456 7.416 19.171 Atomic orbital electron populations 1.21808 0.95609 1.01379 1.02158 1.21487 0.96149 0.95930 1.01966 1.21264 0.93930 0.96011 0.99482 1.21560 1.00354 0.96827 0.96315 1.21882 1.03910 0.94629 1.00553 1.22578 0.94447 0.84961 0.99271 1.88062 1.20041 1.24982 1.93063 1.23707 0.82121 0.97154 0.97537 1.24194 1.00264 0.91905 0.96306 1.68622 1.41040 1.08518 1.00760 1.20224 0.86341 0.93511 0.96743 1.21075 1.07484 1.33013 0.93109 0.92067 1.24993 0.95268 0.95786 0.98533 1.69952 1.11436 1.36444 1.36086 0.86550 0.77489 0.78294 0.85034 1.20109 1.21322 1.20284 1.24123 0.99143 0.93887 0.95954 0.92929 0.92361 0.92620 0.91909 0.92013 0.90157 0.92369 0.92671 0.90205 0.92815 0.94213 0.93710 0.93864 0.92014 0.91221 0.90212 0.95036 0.98574 0.92878 0.89898 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.68 37.16 0.36 -0.83 16 2 C -0.12 -1.02 5.40 -26.73 -0.14 -1.16 16 3 C -0.09 -0.95 2.20 -90.62 -0.20 -1.15 16 4 C -0.11 -1.20 5.28 -26.73 -0.14 -1.34 16 5 C -0.15 -1.94 9.02 37.16 0.34 -1.60 16 6 C 0.06 0.79 5.13 37.16 0.19 0.98 16 7 O -0.34 -5.40 7.21 -35.23 -0.25 -5.66 16 8 C 0.05 0.88 4.48 -25.80 -0.12 0.76 16 9 C 0.00 0.06 7.32 -2.63 -0.02 0.04 16 10 N -0.47 -10.68 6.25 -239.75 -1.50 -12.18 16 11 C 0.16 4.27 4.58 -4.97 -0.02 4.25 16 12 C -0.51 -14.81 8.84 -34.44 -0.30 -15.11 16 13 H 0.06 1.78 7.80 -52.49 -0.41 1.37 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 16 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 C 0.00 -0.03 7.81 -2.76 -0.02 -0.05 16 21 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 22 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 27 H 0.06 0.55 6.29 -51.93 -0.33 0.23 16 28 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.08 1.16 5.92 -51.93 -0.31 0.86 16 30 H 0.05 0.74 8.10 -51.93 -0.42 0.32 16 31 H 0.04 0.46 8.14 -51.92 -0.42 0.03 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.04 0.48 8.13 -51.93 -0.42 0.06 16 34 H 0.06 0.87 7.89 -51.93 -0.41 0.46 16 35 H 0.07 1.41 7.79 -51.93 -0.40 1.00 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.00 -0.10 7.70 -51.93 -0.40 -0.50 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 41 H 0.07 1.23 7.79 -51.93 -0.40 0.82 16 LS Contribution 324.47 15.07 4.89 4.89 Total: -1.00 -30.73 324.47 -8.95 -39.68 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -7.62 Total: -3.61 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: -0.18 Total: -13.72 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.76 Total: -38.68 kcal Atomic # 8 Polarization: -5.40 SS G_CDS: -0.25 Total: -5.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.73 -8.95 -39.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204938012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.157 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds