Wall clock time and date at job start Sun Mar 29 2020 22:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46615 * 2 1 4 4 C 1.53000 * 109.47330 * 65.00322 * 3 2 1 5 5 C 1.53003 * 109.46788 * 186.41498 * 4 3 2 6 6 C 1.53005 * 109.46831 * 185.00482 * 3 2 1 7 7 O 1.42898 * 109.47058 * 173.55174 * 6 3 2 8 8 C 1.42902 * 113.99928 * 179.97438 * 7 6 3 9 9 C 1.53941 * 113.73166 * 111.23143 * 8 7 6 10 10 N 1.48196 * 86.09766 * 90.78428 * 9 8 7 11 11 C 1.46899 * 111.07062 * 137.52411 * 10 9 8 12 12 C 1.50703 * 109.47215 * 70.56198 * 11 10 9 13 13 H 1.07998 * 119.99898 * 0.02562 * 12 11 10 14 14 C 1.37872 * 119.99779 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99864 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47098 * 60.00327 * 16 14 12 18 18 H 1.48498 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47123 * 300.00147 * 16 14 12 20 20 C 1.47958 * 90.79893 * 24.59933 * 10 9 8 21 21 H 1.09003 * 109.46885 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47165 * 299.99536 * 1 2 3 23 23 H 1.08994 * 109.47444 * 60.00346 * 1 2 3 24 24 H 1.08998 * 109.46682 * 240.00263 * 2 1 3 25 25 H 1.08993 * 109.46946 * 119.99826 * 2 1 3 26 26 H 1.09002 * 109.47457 * 304.99874 * 3 2 1 27 27 H 1.09002 * 109.47052 * 306.41484 * 4 3 2 28 28 H 1.08993 * 109.46878 * 66.41568 * 4 3 2 29 29 H 1.08999 * 109.47416 * 291.68202 * 5 4 3 30 30 H 1.09000 * 109.47305 * 51.68885 * 5 4 3 31 31 H 1.09008 * 109.46522 * 171.68153 * 5 4 3 32 32 H 1.09001 * 109.47539 * 53.54774 * 6 3 2 33 33 H 1.09005 * 109.46886 * 293.55150 * 6 3 2 34 34 H 1.09002 * 112.94129 * 339.66740 * 8 7 6 35 35 H 1.08994 * 113.76035 * 205.05883 * 9 8 7 36 36 H 1.08996 * 113.75608 * 336.43176 * 9 8 7 37 37 H 1.08994 * 109.46781 * 190.56458 * 11 10 9 38 38 H 1.09002 * 109.46559 * 310.56652 * 11 10 9 39 39 H 0.97003 * 119.99607 * 179.97438 * 15 14 12 40 40 H 1.09001 * 113.75745 * 221.08177 * 20 10 9 41 41 H 1.09002 * 113.75737 * 89.71960 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6352 2.1265 1.3074 5 6 2.0034 3.6102 1.2419 6 6 3.5648 1.4444 -0.1258 7 8 4.0286 2.7876 -0.2768 8 6 5.4475 2.9018 -0.4028 9 6 5.9113 3.3485 -1.8010 10 7 5.8242 4.7320 -1.2768 11 6 6.9764 5.5341 -1.7093 12 6 6.8713 5.8083 -3.1874 13 1 6.0322 5.4254 -3.7493 14 6 7.8457 6.5489 -3.8221 15 7 8.8672 7.0156 -3.1378 16 14 7.7150 6.8895 -5.6542 17 1 6.4607 7.6348 -5.9309 18 1 8.8798 7.7002 -6.0913 19 1 7.7008 5.6037 -6.3969 20 6 6.0089 4.2415 0.1068 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5137 -0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.6053 1.9816 -0.8418 27 1 0.5597 2.0251 1.4527 28 1 2.1601 1.6583 2.1400 29 1 3.0882 3.7158 1.2452 30 1 1.5987 4.0450 0.3279 31 1 1.5853 4.1267 2.1059 32 1 3.8583 0.8586 -0.9969 33 1 4.0039 1.0070 0.7709 34 1 5.9794 2.0300 -0.0219 35 1 6.9258 3.0356 -2.0479 36 1 5.1935 3.1314 -2.5920 37 1 6.9869 6.4780 -1.1644 38 1 7.8969 4.9868 -1.5059 39 1 9.5529 7.5363 -3.5845 40 1 5.3689 4.7364 0.8372 41 1 7.0520 4.1902 0.4190 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204938012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:15 Heat of formation + Delta-G solvation = -52.470675 kcal Electronic energy + Delta-G solvation = -17774.584838 eV Core-core repulsion = 15075.202713 eV Total energy + Delta-G solvation = -2699.382125 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89580 -38.85029 -36.49540 -34.91248 -32.45359 -31.05402 -29.25534 -27.28339 -26.67372 -24.65272 -23.55421 -23.45294 -21.06446 -20.43990 -18.60710 -17.66968 -17.09682 -16.97036 -16.24818 -15.66862 -15.45240 -15.18885 -14.85064 -14.69887 -14.13288 -13.89447 -13.66537 -13.47539 -13.14154 -12.98742 -12.84238 -12.64154 -12.47214 -12.41645 -12.27293 -12.03402 -11.87443 -11.59186 -11.35918 -11.34619 -11.14430 -11.06473 -10.66299 -10.22957 -9.43509 -8.25188 -6.35962 1.37689 1.41480 1.49699 2.37566 2.57388 3.07389 3.38412 3.56538 3.89366 3.99124 4.00967 4.13624 4.42127 4.42812 4.51384 4.54796 4.58969 4.67320 4.70125 4.75080 4.77588 4.82094 4.91849 5.01275 5.02025 5.03345 5.10348 5.15428 5.20841 5.30868 5.36283 5.48440 5.52701 5.58197 5.72367 5.79210 6.13445 6.40711 6.47874 6.79169 7.34028 8.86396 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037189 B = 0.004380 C = 0.004190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.738195 B = 6390.558078 C = 6681.627883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.086 4.086 4 C -0.109 4.109 5 C -0.151 4.151 6 C 0.057 3.943 7 O -0.360 6.360 8 C 0.081 3.919 9 C -0.002 4.002 10 N -0.492 5.492 11 C 0.174 3.826 12 C -0.531 4.531 13 H 0.055 0.945 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.970 3.030 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.003 4.003 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.048 0.952 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.034 0.966 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.062 0.938 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.073 0.927 37 H -0.001 1.001 38 H -0.022 1.022 39 H 0.266 0.734 40 H 0.089 0.911 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.994 -15.562 8.559 22.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.104 4.104 4 C -0.146 4.146 5 C -0.208 4.208 6 C -0.019 4.019 7 O -0.278 6.278 8 C 0.022 3.978 9 C -0.132 4.132 10 N -0.215 5.215 11 C 0.047 3.953 12 C -0.569 4.569 13 H 0.074 0.926 14 C -0.195 4.195 15 N -0.573 5.573 16 Si 0.794 3.206 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.132 4.132 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.116 0.884 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.017 0.983 38 H -0.005 1.005 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.520 -14.873 8.374 21.774 hybrid contribution 1.351 0.200 -0.854 1.611 sum -12.169 -14.673 7.520 20.492 Atomic orbital electron populations 1.21811 0.95015 1.02142 1.01985 1.21459 0.96615 0.94245 1.02697 1.21259 0.92949 0.97396 0.98840 1.21543 1.01350 0.95149 0.96583 1.21840 1.02495 0.96455 0.99997 1.22847 0.95356 0.83310 1.00386 1.88072 1.19348 1.27490 1.92904 1.23375 0.83051 0.97183 0.94197 1.24227 1.00049 0.90414 0.98461 1.68536 1.39081 1.10127 1.03766 1.19883 0.87219 0.92548 0.95641 1.21367 1.07614 1.33623 0.94301 0.92636 1.25928 0.94653 0.95197 1.03722 1.70071 1.12131 1.36843 1.38231 0.85424 0.77774 0.78599 0.78763 1.19564 1.20359 1.19066 1.24191 0.99958 0.95247 0.93813 0.91716 0.92095 0.93274 0.91658 0.90793 0.92037 0.91059 0.91548 0.92051 0.94698 0.93307 0.93166 0.91966 0.88364 0.91776 0.90836 0.98311 1.00467 0.92508 0.89265 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.68 71.98 0.70 -1.33 16 2 C -0.11 -1.65 5.40 30.60 0.17 -1.48 16 3 C -0.09 -1.69 2.20 -10.79 -0.02 -1.72 16 4 C -0.11 -2.09 5.28 30.60 0.16 -1.93 16 5 C -0.15 -3.71 9.02 71.98 0.65 -3.06 16 6 C 0.06 1.26 5.13 71.98 0.37 1.63 16 7 O -0.36 -10.84 7.21 -148.98 -1.07 -11.92 16 8 C 0.08 2.53 4.48 31.24 0.14 2.67 16 9 C 0.00 -0.08 7.32 86.37 0.63 0.55 16 10 N -0.49 -22.99 6.25 -915.62 -5.72 -28.72 16 11 C 0.17 9.76 4.58 85.56 0.39 10.15 16 12 C -0.53 -31.64 8.84 25.60 0.23 -31.41 16 13 H 0.06 3.29 7.80 -2.91 -0.02 3.27 16 14 C 0.00 0.19 5.46 84.65 0.46 0.66 16 15 N -0.93 -57.37 13.29 21.45 0.28 -57.08 16 16 Si 0.97 45.48 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C 0.00 -0.11 7.81 86.41 0.67 0.56 16 21 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 22 H 0.06 0.77 6.43 -2.39 -0.02 0.76 16 23 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 24 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 1.45 8.11 -2.39 -0.02 1.43 16 27 H 0.07 1.19 6.29 -2.39 -0.02 1.18 16 28 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 29 H 0.06 1.74 5.92 -2.39 -0.01 1.73 16 30 H 0.03 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.05 16 33 H 0.06 1.16 8.13 -2.38 -0.02 1.14 16 34 H 0.10 2.43 7.89 -2.39 -0.02 2.41 16 35 H 0.06 2.61 7.79 -2.39 -0.02 2.59 16 36 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 38 H -0.02 -1.30 7.70 -2.39 -0.02 -1.32 16 39 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 41 H 0.07 2.66 7.79 -2.39 -0.02 2.64 16 Total: -1.00 -66.97 324.47 1.02 -65.95 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: 0.96 Total: 8.96 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 4.55 Total: -24.70 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -5.44 Total: -85.80 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: -1.07 Total: -11.92 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -66.97 1.02 -65.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204938012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.482 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds