Wall clock time and date at job start Sun Mar 29 2020 22:20:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47292 * 2 1 4 4 C 1.53001 * 109.46984 * 64.99933 * 3 2 1 5 5 C 1.53000 * 109.47181 * 184.18107 * 4 3 2 6 6 C 1.52997 * 109.47270 * 184.99944 * 3 2 1 7 7 O 1.42904 * 109.47311 * 175.57128 * 6 3 2 8 8 C 1.42895 * 114.00046 * 180.02562 * 7 6 3 9 9 H 1.08999 * 110.64587 * 26.84716 * 8 7 6 10 10 C 1.55154 * 110.72012 * 149.99992 * 8 7 6 11 11 C 1.54913 * 101.58139 * 153.86202 * 10 8 7 12 12 N 1.47425 * 104.83120 * 322.98539 * 11 10 8 13 13 C 1.36936 * 125.64665 * 204.09358 * 12 11 10 14 14 H 1.07993 * 119.99607 * 156.24477 * 13 12 11 15 15 C 1.38807 * 119.99833 * 335.96773 * 13 12 11 16 16 N 1.31619 * 119.99674 * 160.78792 * 15 13 12 17 17 Si 1.86795 * 120.00411 * 340.78704 * 15 13 12 18 18 H 1.48506 * 109.47091 * 84.99518 * 17 15 13 19 19 H 1.48494 * 109.47321 * 204.99309 * 17 15 13 20 20 H 1.48497 * 109.47274 * 324.99646 * 17 15 13 21 21 C 1.47020 * 108.70476 * 24.35856 * 12 11 10 22 22 H 1.09000 * 109.46813 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47301 * 300.00290 * 1 2 3 24 24 H 1.08994 * 109.47050 * 60.00203 * 1 2 3 25 25 H 1.09001 * 109.47301 * 239.99710 * 2 1 3 26 26 H 1.09003 * 109.47292 * 119.99791 * 2 1 3 27 27 H 1.09004 * 109.46831 * 304.99808 * 3 2 1 28 28 H 1.09001 * 109.46870 * 304.17808 * 4 3 2 29 29 H 1.08993 * 109.47658 * 64.17542 * 4 3 2 30 30 H 1.08994 * 109.47339 * 173.34526 * 5 4 3 31 31 H 1.09000 * 109.46702 * 293.34175 * 5 4 3 32 32 H 1.09000 * 109.47204 * 53.33447 * 5 4 3 33 33 H 1.08995 * 109.47242 * 55.57002 * 6 3 2 34 34 H 1.09002 * 109.46712 * 295.56668 * 6 3 2 35 35 H 1.08990 * 111.00804 * 35.78325 * 10 8 7 36 36 H 1.09006 * 111.03259 * 271.94800 * 10 8 7 37 37 H 1.09000 * 110.36093 * 204.14876 * 11 10 8 38 38 H 1.08998 * 110.37064 * 81.82634 * 11 10 8 39 39 H 0.97005 * 120.00277 * 180.02562 * 16 15 13 40 40 H 1.08996 * 109.88504 * 118.12307 * 21 12 11 41 41 H 1.09000 * 109.88595 * 239.29871 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6353 2.1265 1.3074 5 6 2.0537 3.5976 1.2641 6 6 3.5648 1.4443 -0.1257 7 8 4.0327 2.7906 -0.2295 8 6 5.4517 2.9050 -0.3525 9 1 5.8717 2.0075 -0.8067 10 6 5.8317 4.1653 -1.1737 11 6 7.2479 4.4765 -0.6284 12 7 7.1780 4.1549 0.8086 13 6 7.9855 4.6772 1.7835 14 1 7.6475 4.7013 2.8089 15 6 9.2406 5.1703 1.4546 16 7 9.8579 5.9967 2.2721 17 14 10.0536 4.6611 -0.1483 18 1 9.5772 5.5404 -1.2461 19 1 11.5274 4.7870 -0.0176 20 1 9.7025 3.2514 -0.4554 21 6 6.1020 3.1757 1.0209 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 1.6054 1.9815 -0.8419 28 1 0.5546 2.0598 1.4329 29 1 2.1293 1.6327 2.1440 30 1 1.6626 4.1125 2.1415 31 1 3.1416 3.6658 1.2577 32 1 1.6553 4.0623 0.3623 33 1 3.8566 0.8886 -1.0168 34 1 4.0025 0.9745 0.7551 35 1 5.1451 4.9866 -0.9692 36 1 5.8641 3.9422 -2.2402 37 1 7.4857 5.5308 -0.7701 38 1 7.9907 3.8496 -1.1217 39 1 10.7349 6.3417 2.0421 40 1 6.5157 2.2522 1.4257 41 1 5.3594 3.5837 1.7065 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001204939219.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:24 Heat of formation + Delta-G solvation = -59.846590 kcal Electronic energy + Delta-G solvation = -18192.698954 eV Core-core repulsion = 15492.996986 eV Total energy + Delta-G solvation = -2699.701969 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.23097 -38.58525 -36.62760 -34.35005 -32.47981 -31.49789 -29.83288 -28.95524 -26.12359 -24.60524 -23.47188 -22.73547 -21.80032 -20.73320 -19.00187 -17.99690 -17.29295 -16.86114 -16.15069 -15.69786 -15.36466 -15.09679 -15.01266 -14.71628 -14.03368 -13.87868 -13.83393 -13.59234 -13.21101 -13.09864 -12.83539 -12.78533 -12.59352 -12.38602 -12.17042 -12.10037 -11.86852 -11.67226 -11.49720 -11.44167 -11.31010 -11.05739 -10.81603 -10.24560 -9.02761 -8.21424 -5.54042 1.30025 1.37579 1.47680 2.39432 2.61132 3.03061 3.38162 3.74146 3.83975 3.90793 3.97776 4.10289 4.16596 4.34149 4.41808 4.50042 4.57922 4.59981 4.65895 4.68699 4.77825 4.79359 4.95974 4.97025 4.97453 5.01568 5.04581 5.15131 5.17803 5.21590 5.29595 5.34954 5.48244 5.56981 5.67967 5.74321 6.07166 6.37901 6.73143 7.48908 8.06992 8.99001 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.046341 B = 0.005087 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.076908 B = 5503.126642 C = 5738.851235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.081 4.081 4 C -0.111 4.111 5 C -0.155 4.155 6 C 0.057 3.943 7 O -0.369 6.369 8 C 0.088 3.912 9 H 0.087 0.913 10 C -0.113 4.113 11 C 0.103 3.897 12 N -0.626 5.626 13 C -0.242 4.242 14 H 0.051 0.949 15 C -0.034 4.034 16 N -0.958 5.958 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.304 1.304 20 H -0.265 1.265 21 C 0.113 3.887 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.055 0.945 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.040 0.960 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.106 0.894 37 H 0.044 0.956 38 H 0.031 0.969 39 H 0.265 0.735 40 H 0.028 0.972 41 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.790 -12.491 -9.292 23.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.100 4.100 4 C -0.149 4.149 5 C -0.212 4.212 6 C -0.020 4.020 7 O -0.288 6.288 8 C 0.029 3.971 9 H 0.104 0.896 10 C -0.151 4.151 11 C -0.022 4.022 12 N -0.354 5.354 13 C -0.371 4.371 14 H 0.069 0.931 15 C -0.229 4.229 16 N -0.604 5.604 17 Si 0.781 3.219 18 H -0.191 1.191 19 H -0.233 1.233 20 H -0.191 1.191 21 C -0.012 4.012 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.074 0.926 25 H 0.089 0.911 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.124 0.876 37 H 0.062 0.938 38 H 0.048 0.952 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -17.766 -12.228 -9.189 23.443 hybrid contribution 1.149 0.026 0.041 1.150 sum -16.616 -12.202 -9.148 22.554 Atomic orbital electron populations 1.21797 0.94807 1.02125 1.02111 1.21474 0.96765 0.94410 1.02574 1.21240 0.92646 0.97327 0.98772 1.21542 1.01143 0.95390 0.96809 1.21920 1.02649 0.96427 1.00200 1.22815 0.95430 0.83323 1.00399 1.88041 1.19700 1.27333 1.93736 1.22951 0.81694 0.98673 0.93767 0.89562 1.22770 0.94730 0.97531 1.00076 1.22105 0.96927 0.98599 0.84521 1.44739 1.38634 1.48523 1.03501 1.18542 0.95409 1.33619 0.89537 0.93124 1.25823 0.96875 0.98637 1.01542 1.69947 1.16482 1.33317 1.40665 0.85812 0.76246 0.79509 0.80321 1.19101 1.23268 1.19066 1.21938 0.90258 0.91578 0.97453 0.91886 0.92459 0.92570 0.91112 0.91734 0.90594 0.90890 0.92816 0.94118 0.92056 0.93334 0.92067 0.93727 0.90563 0.87605 0.93754 0.95175 0.92650 0.95436 0.95182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.67 71.98 0.70 -1.18 16 2 C -0.11 -1.64 5.40 30.59 0.17 -1.47 16 3 C -0.08 -1.52 2.24 -10.79 -0.02 -1.54 16 4 C -0.11 -2.29 5.26 30.59 0.16 -2.13 16 5 C -0.15 -3.95 8.98 71.98 0.65 -3.31 16 6 C 0.06 1.25 5.13 71.98 0.37 1.62 16 7 O -0.37 -10.44 6.65 -148.98 -0.99 -11.43 16 8 C 0.09 2.77 3.44 31.79 0.11 2.88 16 9 H 0.09 2.39 7.82 -2.39 -0.02 2.37 16 10 C -0.11 -3.66 6.81 31.99 0.22 -3.44 16 11 C 0.10 4.39 4.73 86.86 0.41 4.80 16 12 N -0.63 -31.41 3.14 -691.96 -2.17 -33.59 16 13 C -0.24 -14.59 10.57 84.03 0.89 -13.70 16 14 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 15 C -0.03 -2.06 5.46 84.86 0.46 -1.59 16 16 N -0.96 -61.82 13.97 21.65 0.30 -61.52 16 17 Si 0.95 47.39 24.31 68.60 1.67 49.06 16 18 H -0.27 -12.29 6.69 99.48 0.67 -11.62 16 19 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 20 H -0.27 -12.61 6.63 99.48 0.66 -11.95 16 21 C 0.11 4.66 7.03 86.74 0.61 5.27 16 22 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.06 0.73 6.48 -2.39 -0.02 0.71 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 28 H 0.07 1.28 6.38 -2.39 -0.02 1.26 16 29 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.06 1.91 5.16 -2.39 -0.01 1.89 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.16 8.11 -2.39 -0.02 1.14 16 34 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 2.53 8.14 -2.39 -0.02 2.52 16 36 H 0.11 2.67 8.14 -2.38 -0.02 2.65 16 37 H 0.04 2.02 7.09 -2.39 -0.02 2.01 16 38 H 0.03 1.28 5.36 -2.39 -0.01 1.27 16 39 H 0.26 16.08 8.31 -92.70 -0.77 15.31 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.03 1.30 7.54 -2.39 -0.02 1.29 16 Total: -1.00 -68.03 311.23 4.40 -63.64 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.88 Total: 7.64 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.71 Total: -13.80 kcal Atomic # 7 Polarization: -93.23 SS G_CDS: -1.87 Total: -95.10 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: -0.99 Total: -11.43 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.67 Total: 49.06 kcal Total: -68.03 4.40 -63.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204939219.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.789 kcal (2) G-P(sol) polarization free energy of solvation -68.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds