Wall clock time and date at job start Sun Mar 29 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46906 * 109.46907 * 119.99683 * 2 1 3 6 6 C 1.46853 * 110.99832 * 184.21088 * 5 2 1 7 7 C 1.53033 * 109.52262 * 174.16246 * 6 5 2 8 8 C 1.53112 * 109.27992 * 59.17361 * 7 6 5 9 9 O 1.42905 * 109.52334 * 182.44192 * 8 7 6 10 10 C 1.42908 * 113.99815 * 269.68468 * 9 8 7 11 11 C 1.50703 * 109.46995 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99542 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47394 * 89.99993 * 15 13 11 17 17 H 1.48504 * 109.47319 * 210.00571 * 15 13 11 18 18 H 1.48511 * 109.47227 * 330.00061 * 15 13 11 19 19 C 1.53120 * 109.16707 * 302.34582 * 8 7 6 20 20 C 1.46844 * 110.99887 * 59.99965 * 5 2 1 21 21 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 22 22 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 23 23 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 26 26 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 27 27 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 28 28 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 29 29 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46125 * 294.17808 * 6 5 2 31 31 H 1.09003 * 109.46462 * 54.14202 * 6 5 2 32 32 H 1.09007 * 109.50330 * 299.23709 * 7 6 5 33 33 H 1.09002 * 109.50417 * 179.12117 * 7 6 5 34 34 H 1.09005 * 109.52421 * 62.25399 * 8 7 6 35 35 H 1.08999 * 109.46924 * 299.99873 * 10 9 8 36 36 H 1.08998 * 109.47034 * 60.00022 * 10 9 8 37 37 H 0.97004 * 119.99949 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.49890 * 297.71825 * 19 8 7 39 39 H 1.08994 * 109.50831 * 177.59288 * 19 8 7 40 40 H 1.09000 * 109.46299 * 305.85220 * 20 5 2 41 41 H 1.08997 * 109.46352 * 65.82665 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 3.4841 -0.6255 1.2849 7 6 3.9470 -1.2268 2.6138 8 6 3.4779 -2.6817 2.7010 9 8 3.8582 -3.2312 3.9642 10 6 5.1429 -3.8571 3.9627 11 6 5.4400 -4.3975 5.3378 12 1 4.7195 -4.2756 6.1331 13 6 6.6310 -5.0484 5.5801 14 7 7.5080 -5.1972 4.6115 15 14 6.9989 -5.7189 7.2843 16 1 6.5021 -7.1147 7.3851 17 1 8.4651 -5.6972 7.5190 18 1 6.3220 -4.8778 8.3041 19 6 1.9538 -2.7278 2.5610 20 6 1.5487 -2.0829 1.2335 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2489 30 1 3.9220 -1.1874 0.4599 31 1 3.8042 0.4148 1.2258 32 1 3.5205 -0.6569 3.4393 33 1 5.0350 -1.1912 2.6701 34 1 3.9351 -3.2606 1.8985 35 1 5.1480 -4.6745 3.2417 36 1 5.9030 -3.1257 3.6881 37 1 8.3461 -5.6549 4.7821 38 1 1.4961 -2.1814 3.3856 39 1 1.6178 -3.7645 2.5795 40 1 0.4631 -2.1012 1.1373 41 1 1.9957 -2.6380 0.4088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205622780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:03 Heat of formation + Delta-G solvation = -58.352389 kcal Electronic energy + Delta-G solvation = -18193.116423 eV Core-core repulsion = 15493.479248 eV Total energy + Delta-G solvation = -2699.637175 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.80872 -37.11260 -34.39177 -32.60691 -30.93482 -29.82183 -27.46565 -27.37957 -27.03220 -23.44767 -22.63930 -22.03222 -19.87259 -18.72865 -16.57910 -16.26166 -15.42111 -14.84123 -14.56770 -14.47851 -14.28144 -13.98241 -13.79280 -13.56701 -12.72871 -12.65753 -12.29428 -12.03542 -11.95019 -11.83397 -11.58017 -11.50071 -11.12440 -11.06073 -10.91480 -10.89011 -10.68039 -10.48573 -10.22663 -10.15730 -9.72576 -9.07144 -8.75560 -8.18163 -8.09248 -6.09247 -4.10794 3.31577 3.36436 3.42151 3.87103 4.35976 4.67532 4.74311 4.90747 4.99674 5.10353 5.19232 5.27222 5.41032 5.44179 5.49281 5.53744 5.62382 5.66357 5.68455 5.73524 5.77805 5.82436 5.91903 5.96179 5.98870 6.13615 6.20018 6.23691 6.34373 6.43639 6.62275 6.73082 7.15446 7.23573 7.25117 7.46430 7.82182 8.18607 8.63173 9.03596 9.54223 11.02271 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056030 B = 0.004376 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.609231 B = 6396.292577 C = 6525.576396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.100 3.900 3 C -0.141 4.141 4 C -0.182 4.182 5 N -0.525 5.525 6 C 0.055 3.945 7 C -0.136 4.136 8 C 0.090 3.910 9 O -0.388 6.388 10 C 0.196 3.804 11 C -0.514 4.514 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.907 3.093 16 H -0.279 1.279 17 H -0.285 1.285 18 H -0.271 1.271 19 C -0.112 4.112 20 C 0.055 3.945 21 H 0.063 0.937 22 H 0.056 0.944 23 H 0.056 0.944 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.068 0.932 34 H 0.044 0.956 35 H 0.003 0.997 36 H 0.004 0.996 37 H 0.263 0.737 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.078 0.922 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.562 10.381 -11.461 19.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.010 3.990 3 C -0.199 4.199 4 C -0.241 4.241 5 N -0.250 5.250 6 C -0.073 4.073 7 C -0.174 4.174 8 C 0.031 3.969 9 O -0.308 6.308 10 C 0.121 3.879 11 C -0.553 4.553 12 H 0.085 0.915 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.734 3.266 16 H -0.205 1.205 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.150 4.150 20 C -0.072 4.072 21 H 0.082 0.918 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.062 0.938 35 H 0.021 0.979 36 H 0.022 0.978 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.684 10.555 -10.913 19.158 hybrid contribution 0.965 -0.888 -0.198 1.327 sum -10.718 9.667 -11.111 18.215 Atomic orbital electron populations 1.21892 0.93863 1.02001 1.01896 1.21059 0.95362 0.94320 0.88217 1.21927 1.01217 0.94783 1.01936 1.22509 1.01723 1.01167 0.98700 1.62198 1.10579 1.14951 1.37312 1.22158 0.87088 1.00791 0.97265 1.22085 1.00949 0.97400 0.97012 1.21851 0.94035 0.92656 0.88338 1.87897 1.38730 1.75177 1.29006 1.20216 0.78891 0.91083 0.97665 1.21083 1.02686 1.35855 0.95632 0.91549 1.24943 0.95701 0.96017 0.97816 1.69966 1.08843 1.42899 1.32158 0.86347 0.77316 0.79298 0.83603 1.20476 1.21091 1.19595 1.21630 0.95690 1.00552 0.97116 1.22144 1.00132 0.87917 0.97038 0.91753 0.92524 0.92467 0.92344 0.92497 0.91725 0.92319 0.92304 0.92362 0.94942 0.90477 0.90673 0.91352 0.93761 0.97919 0.97772 0.92700 0.90611 0.91276 0.90399 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 8.25 37.16 0.31 -0.97 16 2 C 0.10 1.04 0.71 -131.60 -0.09 0.95 16 3 C -0.14 -1.34 8.12 37.16 0.30 -1.04 16 4 C -0.18 -1.81 7.79 37.16 0.29 -1.52 16 5 N -0.53 -6.79 4.47 -219.01 -0.98 -7.77 16 6 C 0.05 0.76 4.67 -3.83 -0.02 0.74 16 7 C -0.14 -2.35 5.72 -26.66 -0.15 -2.50 16 8 C 0.09 1.75 2.68 -26.61 -0.07 1.68 16 9 O -0.39 -9.64 9.98 -35.23 -0.35 -9.99 16 10 C 0.20 5.47 5.51 36.01 0.20 5.67 16 11 C -0.51 -15.40 9.43 -34.44 -0.32 -15.73 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 15 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.11 -1.80 5.75 -26.65 -0.15 -1.96 16 20 C 0.06 0.73 4.64 -3.83 -0.02 0.71 16 21 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 22 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.52 6.28 -51.93 -0.33 0.20 16 24 H 0.06 0.57 6.22 -51.93 -0.32 0.24 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.60 6.54 -51.93 -0.34 0.26 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.62 6.63 -51.93 -0.34 0.27 16 30 H 0.03 0.45 6.71 -51.93 -0.35 0.10 16 31 H 0.08 0.97 5.90 -51.93 -0.31 0.66 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 34 H 0.04 0.88 7.79 -51.93 -0.40 0.47 16 35 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 36 H 0.00 0.13 7.96 -51.93 -0.41 -0.29 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.08 0.90 6.01 -51.93 -0.31 0.59 16 41 H 0.03 0.44 6.63 -51.93 -0.34 0.10 16 LS Contribution 311.28 15.07 4.69 4.69 Total: -1.00 -30.87 311.28 -7.98 -38.85 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -7.22 Total: -3.96 kcal Atomic # 6 Polarization: -12.58 SS G_CDS: 0.17 Total: -12.42 kcal Atomic # 7 Polarization: -33.98 SS G_CDS: -0.24 Total: -34.22 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.87 -7.98 -38.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.504 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds