Wall clock time and date at job start Sun Mar 29 2020 22:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99603 * 2 1 3 5 5 N 1.46906 * 109.46907 * 119.99683 * 2 1 3 6 6 C 1.46853 * 110.99832 * 184.21088 * 5 2 1 7 7 C 1.53033 * 109.52262 * 174.16246 * 6 5 2 8 8 C 1.53112 * 109.27992 * 59.17361 * 7 6 5 9 9 O 1.42905 * 109.52334 * 182.44192 * 8 7 6 10 10 C 1.42908 * 113.99815 * 269.68468 * 9 8 7 11 11 C 1.50703 * 109.46995 * 179.97438 * 10 9 8 12 12 H 1.08005 * 119.99542 * 0.02562 * 11 10 9 13 13 C 1.37869 * 119.99846 * 179.97438 * 11 10 9 14 14 N 1.31512 * 120.00114 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99941 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47394 * 89.99993 * 15 13 11 17 17 H 1.48504 * 109.47319 * 210.00571 * 15 13 11 18 18 H 1.48511 * 109.47227 * 330.00061 * 15 13 11 19 19 C 1.53120 * 109.16707 * 302.34582 * 8 7 6 20 20 C 1.46844 * 110.99887 * 59.99965 * 5 2 1 21 21 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 22 22 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 23 23 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 26 26 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 27 27 H 1.09001 * 109.46832 * 300.00199 * 4 2 1 28 28 H 1.09002 * 109.47153 * 60.00008 * 4 2 1 29 29 H 1.08996 * 109.46952 * 180.02562 * 4 2 1 30 30 H 1.09001 * 109.46125 * 294.17808 * 6 5 2 31 31 H 1.09003 * 109.46462 * 54.14202 * 6 5 2 32 32 H 1.09007 * 109.50330 * 299.23709 * 7 6 5 33 33 H 1.09002 * 109.50417 * 179.12117 * 7 6 5 34 34 H 1.09005 * 109.52421 * 62.25399 * 8 7 6 35 35 H 1.08999 * 109.46924 * 299.99873 * 10 9 8 36 36 H 1.08998 * 109.47034 * 60.00022 * 10 9 8 37 37 H 0.97004 * 119.99949 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.49890 * 297.71825 * 19 8 7 39 39 H 1.08994 * 109.50831 * 177.59288 * 19 8 7 40 40 H 1.09000 * 109.46299 * 305.85220 * 20 5 2 41 41 H 1.08997 * 109.46352 * 65.82665 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0196 -0.6925 1.1995 6 6 3.4841 -0.6255 1.2849 7 6 3.9470 -1.2268 2.6138 8 6 3.4779 -2.6817 2.7010 9 8 3.8582 -3.2312 3.9642 10 6 5.1429 -3.8571 3.9627 11 6 5.4400 -4.3975 5.3378 12 1 4.7195 -4.2756 6.1331 13 6 6.6310 -5.0484 5.5801 14 7 7.5080 -5.1972 4.6115 15 14 6.9989 -5.7189 7.2843 16 1 6.5021 -7.1147 7.3851 17 1 8.4651 -5.6972 7.5190 18 1 6.3220 -4.8778 8.3041 19 6 1.9538 -2.7278 2.5610 20 6 1.5487 -2.0829 1.2335 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.6766 -1.7490 -1.2491 28 1 1.6767 -0.2075 -2.1392 29 1 3.1300 -0.7217 -1.2489 30 1 3.9220 -1.1874 0.4599 31 1 3.8042 0.4148 1.2258 32 1 3.5205 -0.6569 3.4393 33 1 5.0350 -1.1912 2.6701 34 1 3.9351 -3.2606 1.8985 35 1 5.1480 -4.6745 3.2417 36 1 5.9030 -3.1257 3.6881 37 1 8.3461 -5.6549 4.7821 38 1 1.4961 -2.1814 3.3856 39 1 1.6178 -3.7645 2.5795 40 1 0.4631 -2.1012 1.1373 41 1 1.9957 -2.6380 0.4088 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205622780.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:44:03 Heat of formation + Delta-G solvation = -78.293442 kcal Electronic energy + Delta-G solvation = -18193.981132 eV Core-core repulsion = 15493.479248 eV Total energy + Delta-G solvation = -2700.501884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.92466 -38.75466 -35.82666 -34.73033 -32.13886 -31.16073 -29.18139 -28.22834 -28.17490 -25.05045 -24.16466 -23.65202 -21.19869 -19.73834 -18.64358 -17.74372 -17.04149 -16.33748 -16.10515 -15.87496 -15.59191 -15.13124 -14.95358 -14.79790 -14.41791 -13.98143 -13.53863 -13.36966 -13.21105 -12.87469 -12.73215 -12.68997 -12.65382 -12.59459 -12.28067 -12.19991 -11.98486 -11.85662 -11.78233 -11.47708 -11.25778 -11.22866 -10.80203 -10.12822 -9.20003 -8.34092 -6.47188 1.38784 1.41926 1.54122 2.33355 2.86245 2.99451 3.11902 3.78725 3.81457 3.98260 4.03862 4.14916 4.26102 4.27709 4.36154 4.42256 4.58077 4.69305 4.73147 4.77158 4.78824 4.80744 4.88697 4.92055 4.99351 5.04128 5.05163 5.10745 5.12535 5.23427 5.27198 5.30608 5.40659 5.49222 5.54488 5.94477 6.15862 6.27632 6.52696 6.81228 7.25285 8.78280 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056030 B = 0.004376 C = 0.004290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.609231 B = 6396.292577 C = 6525.576396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.096 3.904 3 C -0.140 4.140 4 C -0.180 4.180 5 N -0.533 5.533 6 C 0.065 3.935 7 C -0.130 4.130 8 C 0.078 3.922 9 O -0.405 6.405 10 C 0.213 3.787 11 C -0.552 4.552 12 H 0.061 0.939 13 C 0.007 3.993 14 N -0.931 5.931 15 Si 0.985 3.015 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.264 1.264 19 C -0.105 4.105 20 C 0.063 3.937 21 H 0.059 0.941 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.048 0.952 30 H 0.032 0.968 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.035 0.965 35 H -0.019 1.019 36 H -0.015 1.015 37 H 0.271 0.729 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.564 10.927 -11.735 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.008 3.992 3 C -0.197 4.197 4 C -0.238 4.238 5 N -0.259 5.259 6 C -0.063 4.063 7 C -0.169 4.169 8 C 0.020 3.980 9 O -0.325 6.325 10 C 0.138 3.862 11 C -0.589 4.589 12 H 0.080 0.920 13 C -0.191 4.191 14 N -0.570 5.570 15 Si 0.807 3.193 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.189 1.189 19 C -0.143 4.143 20 C -0.065 4.065 21 H 0.078 0.922 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.067 0.933 30 H 0.050 0.950 31 H 0.112 0.888 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.053 0.947 35 H -0.001 1.001 36 H 0.002 0.998 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.119 0.881 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.706 11.117 -11.212 20.267 hybrid contribution 1.251 -1.019 -0.189 1.625 sum -11.455 10.098 -11.401 19.057 Atomic orbital electron populations 1.21881 0.92575 1.02286 1.02633 1.21217 0.96326 0.94528 0.87168 1.21926 1.00931 0.94171 1.02694 1.22483 1.01083 1.01106 0.99166 1.62192 1.09565 1.14813 1.39280 1.22023 0.88132 1.01333 0.94810 1.21987 0.99790 0.95999 0.99075 1.22242 0.96480 0.93467 0.85809 1.87846 1.37051 1.75367 1.32215 1.19808 0.79894 0.89885 0.96616 1.21410 1.03648 1.37579 0.96265 0.92039 1.25977 0.94944 0.95557 1.02639 1.70073 1.09337 1.42957 1.34608 0.85166 0.77665 0.78849 0.77628 1.19171 1.19766 1.18859 1.21601 0.92687 1.01057 0.98945 1.22089 1.01464 0.87992 0.94919 0.92208 0.90644 0.92393 0.92800 0.90561 0.92183 0.92708 0.90486 0.93332 0.94971 0.88822 0.91377 0.93180 0.94694 1.00084 0.99754 0.91991 0.91123 0.91235 0.88065 0.94643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.25 71.98 0.59 -1.51 16 2 C 0.10 1.78 0.71 3.52 0.00 1.79 16 3 C -0.14 -2.30 8.12 71.98 0.58 -1.72 16 4 C -0.18 -3.14 7.79 71.98 0.56 -2.58 16 5 N -0.53 -12.99 4.47 -846.82 -3.79 -16.78 16 6 C 0.06 1.76 4.67 86.32 0.40 2.17 16 7 C -0.13 -4.62 5.72 30.64 0.18 -4.45 16 8 C 0.08 3.14 2.68 30.67 0.08 3.22 16 9 O -0.40 -20.94 9.98 -148.98 -1.49 -22.43 16 10 C 0.21 12.48 5.51 71.24 0.39 12.87 16 11 C -0.55 -33.89 9.43 25.60 0.24 -33.65 16 12 H 0.06 3.74 7.81 -2.91 -0.02 3.72 16 13 C 0.01 0.43 5.46 84.65 0.46 0.89 16 14 N -0.93 -56.95 13.29 21.44 0.28 -56.67 16 15 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 19 C -0.10 -3.38 5.75 30.65 0.18 -3.20 16 20 C 0.06 1.57 4.64 86.33 0.40 1.97 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 0.88 6.28 -2.39 -0.01 0.87 16 24 H 0.05 0.93 6.22 -2.39 -0.01 0.92 16 25 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.05 1.00 6.54 -2.39 -0.02 0.98 16 28 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 0.94 6.63 -2.39 -0.02 0.93 16 30 H 0.03 0.88 6.71 -2.39 -0.02 0.87 16 31 H 0.09 2.25 5.90 -2.39 -0.01 2.24 16 32 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 33 H 0.05 1.92 7.96 -2.39 -0.02 1.90 16 34 H 0.03 1.45 7.79 -2.38 -0.02 1.44 16 35 H -0.02 -1.14 8.09 -2.39 -0.02 -1.16 16 36 H -0.02 -0.93 7.96 -2.39 -0.02 -0.95 16 37 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 39 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 40 H 0.10 2.10 6.01 -2.39 -0.01 2.08 16 41 H 0.04 0.89 6.63 -2.39 -0.02 0.87 16 Total: -1.00 -67.11 311.28 2.09 -65.03 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.97 Total: 7.93 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 4.07 Total: -24.21 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -3.50 Total: -73.45 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -1.49 Total: -22.43 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -67.11 2.09 -65.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205622780.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.266 kcal (2) G-P(sol) polarization free energy of solvation -67.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds