Wall clock time and date at job start Sun Mar 29 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00213 * 2 1 3 5 5 N 1.46904 * 109.47012 * 240.00619 * 2 1 3 6 6 C 1.47475 * 110.99923 * 156.74426 * 5 2 1 7 7 C 1.53516 * 87.93219 * 221.29617 * 6 5 2 8 8 O 1.42902 * 114.16836 * 272.37941 * 7 6 5 9 9 C 1.42904 * 114.00034 * 243.84114 * 8 7 6 10 10 C 1.52993 * 109.47077 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46940 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47147 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00223 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99801 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99502 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00171 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47255 * 90.00053 * 16 14 12 18 18 H 1.48498 * 109.47366 * 209.99820 * 16 14 12 19 19 H 1.48497 * 109.47132 * 329.99842 * 16 14 12 20 20 C 1.47482 * 111.00064 * 60.77197 * 5 2 1 21 21 H 1.08997 * 109.47441 * 60.00146 * 1 2 3 22 22 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47047 * 299.99214 * 1 2 3 24 24 H 1.09006 * 109.46966 * 50.31049 * 3 2 1 25 25 H 1.08998 * 109.46925 * 170.30684 * 3 2 1 26 26 H 1.08999 * 109.47368 * 290.31007 * 3 2 1 27 27 H 1.09000 * 109.47263 * 60.00342 * 4 2 1 28 28 H 1.08995 * 109.47204 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.47137 * 300.00019 * 4 2 1 30 30 H 1.09002 * 113.47469 * 336.05569 * 6 5 2 31 31 H 1.08998 * 113.47995 * 106.52569 * 6 5 2 32 32 H 1.08994 * 114.17202 * 139.66879 * 7 6 5 33 33 H 1.08998 * 109.46723 * 299.99850 * 9 8 7 34 34 H 1.08996 * 109.46912 * 59.99447 * 9 8 7 35 35 H 1.08998 * 109.47191 * 299.99527 * 10 9 8 36 36 H 1.09005 * 109.47599 * 59.99795 * 10 9 8 37 37 H 1.09005 * 109.47172 * 299.99574 * 11 10 9 38 38 H 1.08991 * 109.47479 * 59.99943 * 11 10 9 39 39 H 0.97007 * 119.99431 * 180.02562 * 15 14 12 40 40 H 1.09004 * 113.47112 * 253.46716 * 20 5 2 41 41 H 1.09001 * 113.47527 * 23.87197 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0197 -0.6924 -1.1995 6 6 3.3884 -0.2599 -1.5377 7 6 2.9610 -0.2488 -3.0121 8 8 3.1134 -1.5056 -3.6749 9 6 4.0614 -1.4877 -4.7441 10 6 4.1415 -2.8778 -5.3779 11 6 5.1560 -2.8585 -6.5231 12 6 5.2354 -4.2279 -7.1470 13 1 4.6232 -5.0316 -6.7653 14 6 6.0889 -4.4546 -8.2059 15 7 6.1585 -5.6499 -8.7501 16 14 7.1462 -3.0640 -8.8675 17 1 8.4448 -3.0438 -8.1475 18 1 7.3876 -3.2727 -10.3178 19 1 6.4467 -1.7701 -8.6633 20 6 1.5620 -0.0129 -2.4259 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.5422 2.0038 0.7909 25 1 3.1161 1.4474 0.1730 26 1 1.8248 1.9040 -0.9637 27 1 1.6768 -1.7490 1.2491 28 1 3.1300 -0.7209 1.2494 29 1 1.6768 -0.2075 2.1392 30 1 3.6397 0.7278 -1.1511 31 1 4.1485 -1.0077 -1.3115 32 1 3.3528 0.5923 -3.5840 33 1 3.7474 -0.7635 -5.4959 34 1 5.0408 -1.2075 -4.3566 35 1 4.4552 -3.6023 -4.6264 36 1 3.1618 -3.1575 -5.7656 37 1 4.8418 -2.1341 -7.2746 38 1 6.1357 -2.5787 -6.1359 39 1 6.7593 -5.8094 -9.4948 40 1 0.7741 -0.5515 -2.9524 41 1 1.3248 1.0404 -2.2759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205664655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:42 Heat of formation + Delta-G solvation = -13.586212 kcal Electronic energy + Delta-G solvation = -17506.606329 eV Core-core repulsion = 14808.910361 eV Total energy + Delta-G solvation = -2697.695968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.02000 -37.39645 -34.75318 -33.52845 -31.55308 -28.15933 -27.73819 -27.48879 -26.32625 -25.43885 -22.70769 -20.84125 -19.94360 -18.81954 -16.98216 -16.58480 -16.32177 -15.59636 -14.88843 -14.68771 -14.37624 -14.03660 -13.94821 -13.36587 -13.09271 -12.63733 -12.55379 -12.32969 -12.14894 -12.05721 -11.69562 -11.59616 -11.32445 -11.25268 -10.92715 -10.81506 -10.67923 -10.54538 -9.99285 -9.80010 -9.64627 -9.17160 -9.16899 -8.82538 -8.52168 -6.02154 -4.00233 3.31509 3.38641 3.41851 3.58887 4.04702 4.37308 4.46419 4.53537 4.55458 4.76392 4.86442 5.01487 5.20091 5.24203 5.31257 5.35737 5.38123 5.47869 5.58310 5.59214 5.61265 5.63980 5.74517 5.78627 5.81816 5.86213 5.92916 6.06742 6.09661 6.31867 6.55758 6.56684 6.90314 6.99364 7.30396 7.43315 7.56172 7.81474 8.56923 9.03656 9.59726 11.11391 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056027 B = 0.003611 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.640654 B = 7751.258726 C = 7897.782986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.061 3.939 3 C -0.184 4.184 4 C -0.131 4.131 5 N -0.446 5.446 6 C -0.035 4.035 7 C 0.063 3.937 8 O -0.352 6.352 9 C 0.058 3.942 10 C -0.100 4.100 11 C -0.011 4.011 12 C -0.519 4.519 13 H 0.073 0.927 14 C 0.065 3.935 15 N -0.904 5.904 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.266 1.266 20 C -0.011 4.011 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.044 0.956 34 H 0.043 0.957 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.016 0.984 38 H 0.012 0.988 39 H 0.263 0.737 40 H 0.092 0.908 41 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.558 16.737 17.673 25.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.242 4.242 4 C -0.189 4.189 5 N -0.168 5.168 6 C -0.164 4.164 7 C 0.003 3.997 8 O -0.270 6.270 9 C -0.018 4.018 10 C -0.137 4.137 11 C -0.048 4.048 12 C -0.557 4.557 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.708 3.292 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.191 1.191 20 C -0.139 4.139 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.095 0.905 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.073 0.927 40 H 0.110 0.890 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.749 15.745 17.740 25.281 hybrid contribution 0.930 1.751 -0.497 2.044 sum -7.820 17.496 17.242 25.779 Atomic orbital electron populations 1.21844 0.93596 1.02674 1.01553 1.21597 0.95906 0.92135 0.93303 1.22574 1.01803 0.97397 1.02438 1.21714 1.00982 1.00872 0.95331 1.69294 1.03893 1.43628 1.00024 1.24660 0.94226 1.01394 0.96157 1.23019 0.96205 0.88085 0.92407 1.88007 1.61889 1.28933 1.48153 1.22901 0.90846 1.00330 0.87714 1.21446 1.01131 0.92963 0.98205 1.19518 0.93816 0.98176 0.93299 1.21123 1.24093 0.95062 1.15444 0.90868 1.25039 0.96734 0.95472 0.96335 1.69924 1.38469 1.21207 1.24661 0.86762 0.81042 0.83286 0.78085 1.20289 1.21369 1.19061 1.24217 0.98667 0.98714 0.92345 0.92643 0.91690 0.92326 0.91907 0.91717 0.91975 0.91746 0.92744 0.92563 0.89619 0.89254 0.90529 0.93801 0.93818 0.91926 0.91938 0.96562 0.96992 0.92740 0.89009 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.37 37.16 0.31 -0.88 16 2 C 0.06 0.57 0.73 -131.60 -0.10 0.47 16 3 C -0.18 -1.40 7.10 37.16 0.26 -1.14 16 4 C -0.13 -1.18 8.66 37.16 0.32 -0.86 16 5 N -0.45 -5.33 6.14 -228.88 -1.41 -6.74 16 6 C -0.04 -0.40 7.07 -7.55 -0.05 -0.46 16 7 C 0.06 0.79 4.65 -26.20 -0.12 0.67 16 8 O -0.35 -5.92 10.39 -35.23 -0.37 -6.29 16 9 C 0.06 1.00 5.78 37.15 0.21 1.22 16 10 C -0.10 -2.10 5.52 -26.73 -0.15 -2.24 16 11 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 12 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 13 H 0.07 2.30 7.99 -52.49 -0.42 1.88 16 14 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 15 N -0.90 -28.31 13.96 55.43 0.77 -27.53 16 16 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 19 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 20 C -0.01 -0.12 6.12 -7.55 -0.05 -0.16 16 21 H 0.05 0.46 7.08 -51.93 -0.37 0.09 16 22 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.42 8.12 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 6.39 -51.93 -0.33 0.15 16 26 H 0.06 0.46 5.75 -51.93 -0.30 0.16 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.50 8.01 -51.93 -0.42 0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.78 4.93 -51.93 -0.26 0.53 16 31 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 0.84 7.88 -51.93 -0.41 0.43 16 33 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 38 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 39 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 0.71 5.52 -51.93 -0.29 0.42 16 LS Contribution 318.06 15.07 4.79 4.79 Total: -1.00 -31.59 318.06 -8.14 -39.73 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -7.37 Total: -3.74 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 0.10 Total: -17.43 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.63 Total: -34.27 kcal Atomic # 8 Polarization: -5.92 SS G_CDS: -0.37 Total: -6.29 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.59 -8.14 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.143 kcal (2) G-P(sol) polarization free energy of solvation -31.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds