Wall clock time and date at job start Sun Mar 29 2020 22:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.46827 * 2 1 4 4 C 1.52997 * 109.47356 * 120.00213 * 2 1 3 5 5 N 1.46904 * 109.47012 * 240.00619 * 2 1 3 6 6 C 1.47475 * 110.99923 * 156.74426 * 5 2 1 7 7 C 1.53516 * 87.93219 * 221.29617 * 6 5 2 8 8 O 1.42902 * 114.16836 * 272.37941 * 7 6 5 9 9 C 1.42904 * 114.00034 * 243.84114 * 8 7 6 10 10 C 1.52993 * 109.47077 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46940 * 179.97438 * 10 9 8 12 12 C 1.50702 * 109.47147 * 179.97438 * 11 10 9 13 13 H 1.08000 * 120.00223 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99801 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99502 * 179.97438 * 14 12 11 16 16 Si 1.86793 * 120.00171 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47255 * 90.00053 * 16 14 12 18 18 H 1.48498 * 109.47366 * 209.99820 * 16 14 12 19 19 H 1.48497 * 109.47132 * 329.99842 * 16 14 12 20 20 C 1.47482 * 111.00064 * 60.77197 * 5 2 1 21 21 H 1.08997 * 109.47441 * 60.00146 * 1 2 3 22 22 H 1.09000 * 109.46656 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47047 * 299.99214 * 1 2 3 24 24 H 1.09006 * 109.46966 * 50.31049 * 3 2 1 25 25 H 1.08998 * 109.46925 * 170.30684 * 3 2 1 26 26 H 1.08999 * 109.47368 * 290.31007 * 3 2 1 27 27 H 1.09000 * 109.47263 * 60.00342 * 4 2 1 28 28 H 1.08995 * 109.47204 * 180.02562 * 4 2 1 29 29 H 1.08999 * 109.47137 * 300.00019 * 4 2 1 30 30 H 1.09002 * 113.47469 * 336.05569 * 6 5 2 31 31 H 1.08998 * 113.47995 * 106.52569 * 6 5 2 32 32 H 1.08994 * 114.17202 * 139.66879 * 7 6 5 33 33 H 1.08998 * 109.46723 * 299.99850 * 9 8 7 34 34 H 1.08996 * 109.46912 * 59.99447 * 9 8 7 35 35 H 1.08998 * 109.47191 * 299.99527 * 10 9 8 36 36 H 1.09005 * 109.47599 * 59.99795 * 10 9 8 37 37 H 1.09005 * 109.47172 * 299.99574 * 11 10 9 38 38 H 1.08991 * 109.47479 * 59.99943 * 11 10 9 39 39 H 0.97007 * 119.99431 * 180.02562 * 15 14 12 40 40 H 1.09004 * 113.47112 * 253.46716 * 20 5 2 41 41 H 1.09001 * 113.47527 * 23.87197 * 20 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 7 2.0197 -0.6924 -1.1995 6 6 3.3884 -0.2599 -1.5377 7 6 2.9610 -0.2488 -3.0121 8 8 3.1134 -1.5056 -3.6749 9 6 4.0614 -1.4877 -4.7441 10 6 4.1415 -2.8778 -5.3779 11 6 5.1560 -2.8585 -6.5231 12 6 5.2354 -4.2279 -7.1470 13 1 4.6232 -5.0316 -6.7653 14 6 6.0889 -4.4546 -8.2059 15 7 6.1585 -5.6499 -8.7501 16 14 7.1462 -3.0640 -8.8675 17 1 8.4448 -3.0438 -8.1475 18 1 7.3876 -3.2727 -10.3178 19 1 6.4467 -1.7701 -8.6633 20 6 1.5620 -0.0129 -2.4259 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 1.5422 2.0038 0.7909 25 1 3.1161 1.4474 0.1730 26 1 1.8248 1.9040 -0.9637 27 1 1.6768 -1.7490 1.2491 28 1 3.1300 -0.7209 1.2494 29 1 1.6768 -0.2075 2.1392 30 1 3.6397 0.7278 -1.1511 31 1 4.1485 -1.0077 -1.3115 32 1 3.3528 0.5923 -3.5840 33 1 3.7474 -0.7635 -5.4959 34 1 5.0408 -1.2075 -4.3566 35 1 4.4552 -3.6023 -4.6264 36 1 3.1618 -3.1575 -5.7656 37 1 4.8418 -2.1341 -7.2746 38 1 6.1357 -2.5787 -6.1359 39 1 6.7593 -5.8094 -9.4948 40 1 0.7741 -0.5515 -2.9524 41 1 1.3248 1.0404 -2.2759 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205664655.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:43:42 Heat of formation + Delta-G solvation = -35.858440 kcal Electronic energy + Delta-G solvation = -17507.572126 eV Core-core repulsion = 14808.910361 eV Total energy + Delta-G solvation = -2698.661764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.86516 -38.57107 -36.06758 -35.07516 -33.52481 -29.16005 -28.84637 -28.37617 -27.44731 -26.25091 -24.50643 -22.12979 -21.36771 -19.64874 -18.94648 -17.66580 -17.36313 -16.81908 -16.31615 -15.71675 -15.65887 -15.24127 -14.79719 -14.68526 -14.54739 -14.23603 -13.60536 -13.40792 -13.20549 -12.95754 -12.76721 -12.70689 -12.48946 -12.31529 -12.08846 -12.00447 -11.87479 -11.69548 -11.63108 -11.44662 -11.36583 -11.29605 -10.76573 -10.32632 -9.61738 -8.29273 -6.34894 1.37565 1.40357 1.52486 2.37575 2.56374 3.05665 3.14991 3.50091 3.80345 3.83123 4.01095 4.14697 4.19237 4.24574 4.29055 4.39438 4.55678 4.58682 4.64767 4.71210 4.73244 4.80682 4.84443 4.88950 4.90893 4.93941 4.95676 5.03983 5.10497 5.17922 5.21418 5.40799 5.46633 5.55690 5.57381 5.64198 6.20526 6.27582 6.43366 6.73500 7.29514 8.88016 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.056027 B = 0.003611 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.640654 B = 7751.258726 C = 7897.782986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.056 3.944 3 C -0.180 4.180 4 C -0.130 4.130 5 N -0.478 5.478 6 C -0.028 4.028 7 C 0.048 3.952 8 O -0.380 6.380 9 C 0.071 3.929 10 C -0.095 4.095 11 C -0.005 4.005 12 C -0.539 4.539 13 H 0.026 0.974 14 C 0.000 4.000 15 N -0.954 5.954 16 Si 0.958 3.042 17 H -0.264 1.264 18 H -0.284 1.284 19 H -0.240 1.240 20 C -0.002 4.002 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.113 0.887 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.045 0.955 36 H 0.047 0.953 37 H 0.028 0.972 38 H 0.026 0.974 39 H 0.267 0.733 40 H 0.075 0.925 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.044 20.452 18.336 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.034 4.034 3 C -0.238 4.238 4 C -0.188 4.188 5 N -0.201 5.201 6 C -0.157 4.157 7 C -0.010 4.010 8 O -0.299 6.299 9 C -0.005 4.005 10 C -0.133 4.133 11 C -0.043 4.043 12 C -0.577 4.577 13 H 0.044 0.956 14 C -0.197 4.197 15 N -0.595 5.595 16 Si 0.781 3.219 17 H -0.189 1.189 18 H -0.209 1.209 19 H -0.164 1.164 20 C -0.131 4.131 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.085 0.915 26 H 0.086 0.914 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.093 0.907 41 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.256 19.470 18.430 28.052 hybrid contribution 0.673 0.480 -0.617 1.032 sum -7.582 19.949 17.813 27.799 Atomic orbital electron populations 1.21837 0.93173 1.01914 1.02551 1.21697 0.96283 0.93177 0.92196 1.22518 1.01990 0.95944 1.03309 1.21716 1.00653 1.00194 0.96244 1.69265 1.04366 1.45159 1.01288 1.24646 0.93588 1.02184 0.95257 1.23332 0.97679 0.87021 0.93014 1.87950 1.61826 1.31789 1.48296 1.22618 0.91987 0.97518 0.88411 1.21264 0.99336 0.95628 0.97094 1.19427 0.95404 0.95178 0.94276 1.21490 1.23571 0.96514 1.16098 0.95602 1.26133 0.98340 0.98678 0.96507 1.70094 1.39774 1.24039 1.25544 0.85542 0.79098 0.80006 0.77290 1.18934 1.20940 1.16355 1.24205 0.97247 0.99997 0.91627 0.92357 0.93365 0.90578 0.90515 0.91476 0.91386 0.93454 0.93217 0.90714 0.86906 0.91197 0.88131 0.92050 0.92354 0.93633 0.93429 0.95365 0.95612 0.92410 0.90657 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 8.37 71.98 0.60 -1.50 16 2 C 0.06 0.94 0.73 3.53 0.00 0.94 16 3 C -0.18 -2.13 7.10 71.98 0.51 -1.62 16 4 C -0.13 -2.19 8.66 71.98 0.62 -1.57 16 5 N -0.48 -10.84 6.14 -878.43 -5.40 -16.24 16 6 C -0.03 -0.59 7.07 83.58 0.59 0.00 16 7 C 0.05 1.12 4.65 30.94 0.14 1.26 16 8 O -0.38 -12.44 10.39 -148.98 -1.55 -13.98 16 9 C 0.07 2.31 5.78 71.98 0.42 2.72 16 10 C -0.10 -4.03 5.52 30.59 0.17 -3.86 16 11 C -0.01 -0.26 4.04 29.85 0.12 -0.14 16 12 C -0.54 -32.30 9.66 25.60 0.25 -32.06 16 13 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 14 C 0.00 -0.01 5.47 84.65 0.46 0.45 16 15 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 16 Si 0.96 44.27 27.47 68.60 1.88 46.15 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 19 H -0.24 -10.06 6.54 99.48 0.65 -9.41 16 20 C 0.00 -0.05 6.12 83.57 0.51 0.47 16 21 H 0.06 0.85 7.08 -2.39 -0.02 0.83 16 22 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 23 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 24 H 0.08 0.72 8.12 -2.38 -0.02 0.70 16 25 H 0.07 0.77 6.39 -2.39 -0.02 0.76 16 26 H 0.07 0.73 5.75 -2.39 -0.01 0.72 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.05 0.86 8.01 -2.39 -0.02 0.84 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 1.70 4.93 -2.39 -0.01 1.69 16 31 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.10 1.84 7.88 -2.39 -0.02 1.82 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.05 2.10 8.14 -2.38 -0.02 2.08 16 37 H 0.03 1.28 7.20 -2.38 -0.02 1.26 16 38 H 0.03 1.16 7.57 -2.39 -0.02 1.14 16 39 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 40 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.11 1.55 5.52 -2.39 -0.01 1.54 16 Total: -1.00 -70.31 318.06 0.55 -69.75 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: 0.91 Total: 10.24 kcal Atomic # 6 Polarization: -39.30 SS G_CDS: 4.40 Total: -34.90 kcal Atomic # 7 Polarization: -72.17 SS G_CDS: -5.10 Total: -77.26 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.55 Total: -13.98 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.88 Total: 46.15 kcal Total: -70.31 0.55 -69.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205664655.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.894 kcal (2) G-P(sol) polarization free energy of solvation -70.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds