Wall clock time and date at job start Sun Mar 29 2020 22:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47384 * 2 1 4 4 C 1.53000 * 109.47023 * 120.00216 * 2 1 3 5 5 C 1.53007 * 109.47028 * 64.99758 * 4 2 1 6 6 C 1.53000 * 109.47028 * 179.97438 * 5 4 2 7 7 O 1.42896 * 109.47351 * 179.97438 * 6 5 4 8 8 C 1.42901 * 114.00247 * 179.97438 * 7 6 5 9 9 H 1.08997 * 110.64120 * 333.14550 * 8 7 6 10 10 C 1.55154 * 110.72174 * 210.00295 * 8 7 6 11 11 C 1.54907 * 101.58377 * 206.13988 * 10 8 7 12 12 N 1.47421 * 104.83505 * 37.00496 * 11 10 8 13 13 C 1.36932 * 125.64985 * 155.83367 * 12 11 10 14 14 H 1.08003 * 120.00113 * 353.86283 * 13 12 11 15 15 C 1.38812 * 119.99976 * 173.85611 * 13 12 11 16 16 N 1.31619 * 120.00236 * 6.81502 * 15 13 12 17 17 Si 1.86804 * 120.00121 * 186.81341 * 15 13 12 18 18 H 1.48500 * 109.47151 * 94.98344 * 17 15 13 19 19 H 1.48497 * 109.47241 * 214.98759 * 17 15 13 20 20 H 1.48502 * 109.46858 * 334.98728 * 17 15 13 21 21 C 1.47026 * 108.70258 * 335.88086 * 12 11 10 22 22 H 1.08994 * 109.47473 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47162 * 59.99428 * 1 2 3 24 24 H 1.09004 * 109.46734 * 300.00136 * 1 2 3 25 25 H 1.09004 * 109.46734 * 239.99864 * 2 1 3 26 26 H 1.09004 * 109.47296 * 60.00208 * 3 2 1 27 27 H 1.09003 * 109.47288 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47435 * 299.99845 * 3 2 1 29 29 H 1.09000 * 109.47120 * 184.99116 * 4 2 1 30 30 H 1.08999 * 109.47537 * 304.99728 * 4 2 1 31 31 H 1.09000 * 109.46645 * 299.99648 * 5 4 2 32 32 H 1.08994 * 109.47055 * 60.00127 * 5 4 2 33 33 H 1.09002 * 109.47420 * 300.00266 * 6 5 4 34 34 H 1.09001 * 109.47290 * 59.99497 * 6 5 4 35 35 H 1.09005 * 111.00225 * 324.21187 * 10 8 7 36 36 H 1.08996 * 111.00690 * 88.06057 * 10 8 7 37 37 H 1.09000 * 110.37091 * 155.84892 * 11 10 8 38 38 H 1.09008 * 110.36243 * 278.16836 * 11 10 8 39 39 H 0.97001 * 120.00267 * 179.97438 * 16 15 13 40 40 H 1.09001 * 109.87706 * 241.63924 * 21 12 11 41 41 H 1.08991 * 109.88761 * 120.47345 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1956 1.1879 6 6 2.1456 -2.9170 2.4368 7 8 1.7671 -4.2937 2.3799 8 6 2.1979 -5.0621 3.5051 9 1 3.0932 -4.6259 3.9481 10 6 2.4498 -6.5379 3.0981 11 6 2.2196 -7.2746 4.4411 12 7 1.1088 -6.5492 5.0840 13 6 0.2552 -7.0655 6.0219 14 1 0.3033 -8.1139 6.2770 15 6 -0.6719 -6.2415 6.6451 16 7 -0.8232 -4.9979 6.2415 17 14 -1.7050 -6.8976 8.0564 18 1 -1.0575 -6.5506 9.3469 19 1 -3.0591 -6.2902 8.0028 20 1 -1.8197 -8.3737 7.9413 21 6 1.0686 -5.1798 4.5504 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 3.1263 -0.6445 1.2951 30 1 1.6054 -0.2618 2.1370 31 1 0.5488 -2.2723 1.1420 32 1 2.0697 -2.6550 0.3002 33 1 3.2320 -2.8401 2.4823 34 1 1.7115 -2.4576 3.3248 35 1 1.7316 -6.8637 2.3456 36 1 3.4720 -6.6771 2.7463 37 1 1.9409 -8.3130 4.2614 38 1 3.1151 -7.2231 5.0605 39 1 -1.4713 -4.4222 6.6767 40 1 1.2325 -4.4634 5.3554 41 1 0.1045 -4.9944 4.0770 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205970694.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:26 Heat of formation + Delta-G solvation = -67.446013 kcal Electronic energy + Delta-G solvation = -17595.559526 eV Core-core repulsion = 14895.528022 eV Total energy + Delta-G solvation = -2700.031504 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.91454 -38.22255 -37.15458 -34.36372 -32.71275 -30.72102 -29.07258 -28.00670 -26.92155 -26.01940 -22.73023 -22.02714 -21.75721 -20.78901 -18.95975 -17.79430 -17.16711 -16.74209 -15.95315 -15.74341 -15.60646 -15.09262 -14.61974 -14.35824 -14.23893 -13.89549 -13.54609 -13.28028 -13.10534 -13.00024 -12.71755 -12.63106 -12.54482 -12.45447 -12.11976 -11.94296 -11.92077 -11.74627 -11.52810 -11.41919 -11.36350 -11.33415 -10.73802 -10.35201 -8.93283 -7.87504 -5.24281 1.44364 1.47093 1.56206 2.46493 2.70622 3.31241 3.68697 3.86412 3.94249 3.96639 4.05896 4.09511 4.20311 4.24188 4.42439 4.49503 4.51912 4.64397 4.73124 4.79934 4.83223 4.87137 4.94789 4.98442 5.03640 5.05334 5.11901 5.22636 5.24422 5.29250 5.38072 5.42788 5.45102 5.52450 5.55393 5.68628 6.16096 6.42324 7.05947 7.73972 8.39132 9.23205 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027834 B = 0.004595 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.716804 B = 6092.278883 C = 6870.690062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.108 4.108 5 C -0.111 4.111 6 C 0.056 3.944 7 O -0.393 6.393 8 C 0.073 3.927 9 H 0.077 0.923 10 C -0.114 4.114 11 C 0.127 3.873 12 N -0.630 5.630 13 C -0.247 4.247 14 H 0.087 0.913 15 C -0.069 4.069 16 N -0.953 5.953 17 Si 0.982 3.018 18 H -0.285 1.285 19 H -0.295 1.295 20 H -0.265 1.265 21 C 0.174 3.826 22 H 0.048 0.952 23 H 0.062 0.938 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.031 0.969 35 H 0.066 0.934 36 H 0.107 0.893 37 H 0.052 0.948 38 H 0.036 0.964 39 H 0.246 0.754 40 H 0.008 0.992 41 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.378 8.583 -12.030 16.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.145 4.145 5 C -0.149 4.149 6 C -0.020 4.020 7 O -0.312 6.312 8 C 0.014 3.986 9 H 0.095 0.905 10 C -0.152 4.152 11 C 0.002 3.998 12 N -0.358 5.358 13 C -0.375 4.375 14 H 0.105 0.895 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.810 3.190 18 H -0.212 1.212 19 H -0.222 1.222 20 H -0.189 1.189 21 C 0.048 3.952 22 H 0.067 0.933 23 H 0.081 0.919 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.049 0.951 35 H 0.085 0.915 36 H 0.125 0.875 37 H 0.070 0.930 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.026 0.974 41 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges 8.120 8.560 -12.072 16.880 hybrid contribution -0.892 -0.022 1.258 1.542 sum 7.228 8.538 -10.815 15.560 Atomic orbital electron populations 1.21929 0.95704 1.01563 1.01840 1.21096 0.95644 0.96724 0.97815 1.21823 1.01270 0.95151 1.01981 1.21554 1.01518 0.92958 0.98503 1.21536 1.01308 0.95453 0.96576 1.22710 0.99098 0.81397 0.98780 1.87843 1.79541 1.21260 1.42581 1.23314 0.95799 0.92728 0.86760 0.90474 1.22792 1.02843 0.92458 0.97113 1.21813 0.90206 0.95783 0.91977 1.44729 1.33757 1.10010 1.47257 1.19548 1.11110 0.94251 1.12624 0.89478 1.25763 1.01503 0.96385 1.02482 1.70238 1.38545 1.07639 1.43738 0.85007 0.77137 0.77989 0.78897 1.21191 1.22196 1.18900 1.21252 0.94954 0.86253 0.92705 0.93318 0.91864 0.93171 0.90696 0.92952 0.92064 0.91990 0.90651 0.92411 0.92431 0.90684 0.91815 0.95094 0.91511 0.87495 0.93001 0.94629 0.94449 0.97415 0.97605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 8.95 71.98 0.64 -2.25 16 2 C -0.09 -1.65 2.92 -10.80 -0.03 -1.68 16 3 C -0.14 -2.11 9.19 71.98 0.66 -1.45 16 4 C -0.11 -2.18 4.68 30.60 0.14 -2.04 16 5 C -0.11 -2.84 5.34 30.60 0.16 -2.67 16 6 C 0.06 1.76 5.77 71.98 0.42 2.17 16 7 O -0.39 -15.23 10.07 -148.98 -1.50 -16.73 16 8 C 0.07 2.92 3.45 31.78 0.11 3.03 16 9 H 0.08 2.79 7.82 -2.39 -0.02 2.77 16 10 C -0.11 -4.07 6.81 31.98 0.22 -3.85 16 11 C 0.13 5.28 7.23 86.86 0.63 5.91 16 12 N -0.63 -34.19 3.39 -691.99 -2.35 -36.54 16 13 C -0.25 -14.38 10.26 84.03 0.86 -13.52 16 14 H 0.09 4.79 7.84 -2.91 -0.02 4.76 16 15 C -0.07 -4.05 5.48 84.86 0.47 -3.59 16 16 N -0.95 -59.98 10.36 21.65 0.22 -59.76 16 17 Si 0.98 46.98 29.56 68.60 2.03 49.00 16 18 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 19 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 20 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.17 9.29 5.15 86.73 0.45 9.74 16 22 H 0.05 1.03 6.57 -2.39 -0.02 1.01 16 23 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.06 1.64 6.57 -2.39 -0.02 1.63 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.67 8.11 -2.39 -0.02 1.65 16 34 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.07 2.48 8.14 -2.38 -0.02 2.47 16 36 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 40 H 0.01 0.45 7.36 -2.39 -0.02 0.44 16 41 H 0.01 0.35 7.46 -2.39 -0.02 0.33 16 Total: -1.00 -69.12 323.98 4.08 -65.04 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.95 Total: 9.18 kcal Atomic # 6 Polarization: -14.92 SS G_CDS: 4.73 Total: -10.19 kcal Atomic # 7 Polarization: -94.18 SS G_CDS: -2.12 Total: -96.30 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: -1.50 Total: -16.73 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.00 kcal Total: -69.12 4.08 -65.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205970694.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.410 kcal (2) G-P(sol) polarization free energy of solvation -69.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds