Wall clock time and date at job start Sun Mar 29 2020 22:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47103 * 120.00399 * 2 1 3 5 5 C 1.53004 * 109.46938 * 64.99568 * 4 2 1 6 6 C 1.53002 * 109.46731 * 180.02562 * 5 4 2 7 7 O 1.42901 * 109.47054 * 180.02562 * 6 5 4 8 8 C 1.42901 * 113.99953 * 179.97438 * 7 6 5 9 9 H 1.08999 * 110.64097 * 26.85773 * 8 7 6 10 10 C 1.55157 * 110.71738 * 149.99722 * 8 7 6 11 11 C 1.54918 * 101.58155 * 153.86327 * 10 8 7 12 12 N 1.47425 * 104.82827 * 322.99497 * 11 10 8 13 13 C 1.36938 * 125.64463 * 204.10316 * 12 11 10 14 14 H 1.07998 * 120.00330 * 180.02562 * 13 12 11 15 15 C 1.38823 * 119.99891 * 0.02562 * 13 12 11 16 16 N 1.31612 * 119.99977 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99878 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.46992 * 60.00214 * 17 15 13 19 19 H 1.48494 * 109.46988 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47358 * 300.00495 * 17 15 13 21 21 C 1.47015 * 108.70882 * 24.12597 * 12 11 10 22 22 H 1.08997 * 109.47468 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47050 * 300.00273 * 1 2 3 24 24 H 1.09001 * 109.46999 * 59.99327 * 1 2 3 25 25 H 1.09000 * 109.46661 * 240.00092 * 2 1 3 26 26 H 1.08999 * 109.47026 * 180.02562 * 3 2 1 27 27 H 1.09006 * 109.47381 * 299.99869 * 3 2 1 28 28 H 1.09000 * 109.47184 * 60.00413 * 3 2 1 29 29 H 1.08998 * 109.46886 * 305.00079 * 4 2 1 30 30 H 1.08995 * 109.46916 * 184.99793 * 4 2 1 31 31 H 1.08997 * 109.47425 * 60.00403 * 5 4 2 32 32 H 1.09002 * 109.47207 * 300.00091 * 5 4 2 33 33 H 1.08996 * 109.47559 * 59.99754 * 6 5 4 34 34 H 1.09002 * 109.47125 * 299.99867 * 6 5 4 35 35 H 1.09001 * 111.00846 * 271.94036 * 10 8 7 36 36 H 1.09000 * 111.00346 * 35.79567 * 10 8 7 37 37 H 1.08999 * 110.35942 * 81.82689 * 11 10 8 38 38 H 1.08996 * 110.36556 * 204.15522 * 11 10 8 39 39 H 0.96999 * 120.00060 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.88350 * 239.52260 * 21 12 11 41 41 H 1.08997 * 110.01690 * 118.42776 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6351 -2.1955 1.1878 6 6 2.1446 -2.9167 2.4373 7 8 1.7670 -4.2937 2.3798 8 6 2.1969 -5.0618 3.5055 9 1 2.3038 -4.4274 4.3854 10 6 1.2100 -6.2260 3.7849 11 6 2.1315 -7.2525 4.4898 12 7 3.4282 -7.1326 3.7987 13 6 4.3900 -8.1051 3.7320 14 1 5.3106 -7.9186 3.1992 15 6 4.1815 -9.3309 4.3495 16 7 3.0598 -9.5581 4.9993 17 14 5.4932 -10.6578 4.2580 18 1 6.7487 -10.1557 4.8719 19 1 5.0307 -11.8624 4.9929 20 1 5.7432 -11.0096 2.8372 21 6 3.5180 -5.7959 3.1932 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9564 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 1.6054 -0.2619 2.1369 30 1 3.1263 -0.6444 1.2950 31 1 2.0697 -2.6551 0.3001 32 1 0.5488 -2.2724 1.1419 33 1 1.7098 -2.4571 3.3249 34 1 3.2309 -2.8399 2.4837 35 1 0.4046 -5.9055 4.4457 36 1 0.8120 -6.6324 2.8550 37 1 2.2398 -7.0028 5.5453 38 1 1.7330 -8.2607 4.3764 39 1 2.9140 -10.4147 5.4305 40 1 3.6463 -5.8854 2.1145 41 1 4.3569 -5.2478 3.6219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205970695.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:28 Heat of formation + Delta-G solvation = -65.415794 kcal Electronic energy + Delta-G solvation = -17390.411727 eV Core-core repulsion = 14690.468260 eV Total energy + Delta-G solvation = -2699.943467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.95527 -38.22444 -37.18662 -34.29982 -32.64797 -31.02802 -28.89052 -27.98879 -26.91749 -26.02195 -22.73571 -22.03934 -21.76245 -20.77358 -18.98702 -17.93835 -16.79128 -16.75771 -16.23146 -15.85829 -15.50339 -15.08093 -14.61156 -14.55855 -14.25149 -13.75947 -13.60783 -13.24590 -13.05555 -12.96849 -12.77556 -12.65791 -12.43383 -12.39618 -12.07203 -12.03279 -11.90646 -11.75502 -11.53013 -11.39851 -11.35039 -11.27313 -10.76785 -10.44511 -8.93629 -7.79873 -5.25618 1.45998 1.50022 1.56530 2.46181 2.67380 3.30329 3.69107 3.82106 3.89825 3.99197 4.06281 4.08610 4.16711 4.23522 4.41664 4.52329 4.59338 4.65307 4.71011 4.79889 4.84152 4.87394 4.91181 5.00220 5.02118 5.04660 5.05856 5.12831 5.24177 5.28383 5.38361 5.42479 5.53720 5.55972 5.58568 5.75663 6.26120 6.37483 7.07378 7.73517 8.37569 9.22205 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.055692 B = 0.003648 C = 0.003506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.648375 B = 7674.376383 C = 7985.447232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.107 4.107 5 C -0.113 4.113 6 C 0.053 3.947 7 O -0.392 6.392 8 C 0.092 3.908 9 H 0.083 0.917 10 C -0.127 4.127 11 C 0.154 3.846 12 N -0.626 5.626 13 C -0.247 4.247 14 H 0.079 0.921 15 C -0.066 4.066 16 N -0.949 5.949 17 Si 0.986 3.014 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.277 1.277 21 C 0.114 3.886 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.046 0.954 35 H 0.092 0.908 36 H 0.062 0.938 37 H -0.003 1.003 38 H 0.078 0.922 39 H 0.250 0.750 40 H 0.023 0.977 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 19.664 -7.100 21.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.023 4.023 7 O -0.311 6.311 8 C 0.034 3.966 9 H 0.101 0.899 10 C -0.165 4.165 11 C 0.030 3.970 12 N -0.353 5.353 13 C -0.376 4.376 14 H 0.097 0.903 15 C -0.258 4.258 16 N -0.598 5.598 17 Si 0.813 3.187 18 H -0.203 1.203 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.011 4.011 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.077 0.923 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.065 0.935 35 H 0.110 0.890 36 H 0.081 0.919 37 H 0.015 0.985 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.041 0.959 41 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -4.474 19.409 -7.194 21.177 hybrid contribution 0.877 -0.878 0.330 1.284 sum -3.598 18.530 -6.863 20.085 Atomic orbital electron populations 1.21906 0.95043 1.01777 1.02016 1.21108 0.96187 0.96539 0.97766 1.21827 1.01028 0.95333 1.02114 1.21542 1.01177 0.93006 0.98744 1.21549 1.01875 0.95252 0.96375 1.22782 0.98967 0.81026 0.99567 1.87896 1.77963 1.21484 1.43748 1.22953 0.93307 0.92045 0.88280 0.89925 1.22988 0.97592 0.95113 1.00828 1.21751 0.84373 0.98929 0.91989 1.44702 1.17586 1.11164 1.61844 1.19442 0.96714 0.92846 1.28550 0.90279 1.25698 1.00149 1.00042 0.99952 1.70020 1.25952 1.23749 1.40112 0.85053 0.78018 0.77936 0.77706 1.20280 1.21576 1.20282 1.21826 0.96649 0.86518 0.96152 0.92925 0.92415 0.92301 0.91591 0.92612 0.92227 0.92385 0.91144 0.91609 0.92141 0.91016 0.92249 0.93518 0.88971 0.91916 0.98512 0.90426 0.94068 0.95869 0.95639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.95 71.98 0.64 -1.47 16 2 C -0.10 -1.43 2.92 -10.79 -0.03 -1.46 16 3 C -0.15 -1.80 9.19 71.98 0.66 -1.13 16 4 C -0.11 -1.74 4.68 30.59 0.14 -1.60 16 5 C -0.11 -2.38 5.34 30.60 0.16 -2.22 16 6 C 0.05 1.35 5.77 71.98 0.42 1.76 16 7 O -0.39 -13.38 10.07 -148.98 -1.50 -14.88 16 8 C 0.09 3.46 3.45 31.78 0.11 3.57 16 9 H 0.08 2.76 7.82 -2.39 -0.02 2.74 16 10 C -0.13 -5.11 6.81 31.99 0.22 -4.89 16 11 C 0.15 7.94 5.89 86.86 0.51 8.46 16 12 N -0.63 -34.25 3.39 -691.98 -2.35 -36.60 16 13 C -0.25 -14.45 10.27 84.04 0.86 -13.59 16 14 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 15 C -0.07 -3.83 5.49 84.87 0.47 -3.36 16 16 N -0.95 -57.56 10.09 21.65 0.22 -57.34 16 17 Si 0.99 46.42 29.55 68.60 2.03 48.45 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 21 C 0.11 5.16 7.02 86.73 0.61 5.77 16 22 H 0.05 0.82 6.56 -2.39 -0.02 0.80 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 1.02 8.14 -2.39 -0.02 1.01 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.51 6.56 -2.39 -0.02 1.49 16 33 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 34 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.18 16 38 H 0.08 4.50 5.87 -2.39 -0.01 4.49 16 39 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 40 H 0.02 1.08 8.06 -2.39 -0.02 1.07 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -65.49 323.33 4.12 -61.37 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.95 Total: 9.18 kcal Atomic # 6 Polarization: -14.94 SS G_CDS: 4.77 Total: -10.17 kcal Atomic # 7 Polarization: -91.81 SS G_CDS: -2.13 Total: -93.94 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -1.50 Total: -14.88 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -65.49 4.12 -61.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205970695.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.050 kcal (2) G-P(sol) polarization free energy of solvation -65.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds