Wall clock time and date at job start Sun Mar 29 2020 22:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47327 * 2 1 4 4 C 1.52998 * 109.47272 * 120.00400 * 2 1 3 5 5 C 1.53003 * 109.47325 * 64.99831 * 4 2 1 6 6 C 1.52998 * 109.47325 * 180.02562 * 5 4 2 7 7 O 1.42891 * 109.47249 * 179.97438 * 6 5 4 8 8 C 1.42903 * 114.00030 * 180.02562 * 7 6 5 9 9 C 1.53935 * 113.73471 * 111.23481 * 8 7 6 10 10 N 1.48193 * 86.10337 * 90.77945 * 9 8 7 11 11 C 1.46894 * 111.06841 * 137.52059 * 10 9 8 12 12 C 1.50700 * 109.47159 * 70.57068 * 11 10 9 13 13 H 1.07999 * 119.99907 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99829 * 179.97438 * 12 11 10 15 15 N 1.31511 * 120.00116 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 119.99852 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46860 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47096 * 119.99987 * 16 14 12 19 19 H 1.48500 * 109.47159 * 240.00037 * 16 14 12 20 20 C 1.47967 * 90.79407 * 24.60047 * 10 9 8 21 21 H 1.09002 * 109.46466 * 299.99451 * 1 2 3 22 22 H 1.08995 * 109.47514 * 59.99605 * 1 2 3 23 23 H 1.08998 * 109.46961 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46495 * 239.99998 * 2 1 3 25 25 H 1.08999 * 109.47719 * 180.02562 * 3 2 1 26 26 H 1.09004 * 109.47388 * 300.00569 * 3 2 1 27 27 H 1.09006 * 109.46998 * 59.99882 * 3 2 1 28 28 H 1.09000 * 109.47142 * 304.99783 * 4 2 1 29 29 H 1.09004 * 109.47224 * 184.99652 * 4 2 1 30 30 H 1.09000 * 109.47050 * 59.99896 * 5 4 2 31 31 H 1.09004 * 109.46824 * 300.00066 * 5 4 2 32 32 H 1.09010 * 109.46986 * 60.00051 * 6 5 4 33 33 H 1.08998 * 109.46857 * 300.00428 * 6 5 4 34 34 H 1.09002 * 112.93710 * 339.66760 * 8 7 6 35 35 H 1.09000 * 113.76137 * 205.06320 * 9 8 7 36 36 H 1.09002 * 113.75885 * 336.43020 * 9 8 7 37 37 H 1.08999 * 109.46814 * 190.56779 * 11 10 9 38 38 H 1.08996 * 109.47288 * 310.56415 * 11 10 9 39 39 H 0.96995 * 119.99693 * 179.97438 * 15 14 12 40 40 H 1.09001 * 113.75575 * 221.08036 * 20 10 9 41 41 H 1.08993 * 113.75515 * 89.72269 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6353 -2.1956 1.1879 6 6 2.1448 -2.9167 2.4373 7 8 1.7662 -4.2934 2.3803 8 6 2.1951 -5.0613 3.5067 9 6 1.0423 -5.5274 4.4140 10 7 1.0048 -6.7450 3.5701 11 6 0.8402 -7.9518 4.3913 12 6 -0.5550 -7.9860 4.9600 13 1 -1.2500 -7.1909 4.7336 14 6 -0.9444 -9.0328 5.7684 15 7 -0.0985 -10.0017 6.0429 16 14 -2.6736 -9.0749 6.4739 17 1 -3.4232 -7.8764 6.0186 18 1 -3.3690 -10.3011 6.0071 19 1 -2.6031 -9.0801 7.9572 20 6 2.4219 -6.5508 3.1910 21 1 -0.3632 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0276 0.0005 24 1 1.8932 -0.5139 -0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6767 1.9564 -0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6055 -0.2619 2.1369 29 1 3.1264 -0.6445 1.2950 30 1 2.0699 -2.6550 0.3001 31 1 0.5489 -2.2724 1.1420 32 1 1.7098 -2.4571 3.3249 33 1 3.2310 -2.8398 2.4837 34 1 3.0195 -4.5972 4.0481 35 1 1.3433 -5.7163 5.4445 36 1 0.1465 -4.9110 4.3375 37 1 1.0030 -8.8357 3.7748 38 1 1.5644 -7.9386 5.2058 39 1 -0.3725 -10.7379 6.6119 40 1 2.6263 -6.7506 2.1392 41 1 3.1271 -7.0397 3.8629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205976707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:17 Heat of formation + Delta-G solvation = -58.427224 kcal Electronic energy + Delta-G solvation = -17123.109971 eV Core-core repulsion = 14423.469551 eV Total energy + Delta-G solvation = -2699.640420 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.87484 -38.45353 -37.20930 -34.98403 -32.71477 -30.84190 -27.99453 -27.38110 -26.96720 -26.29779 -23.57492 -22.58412 -21.00161 -20.55404 -18.61438 -17.71961 -17.09090 -16.90804 -16.23852 -15.87801 -15.60044 -15.18976 -15.03715 -14.50170 -14.38066 -13.95675 -13.83574 -13.33792 -13.09893 -13.02217 -12.86342 -12.67547 -12.53515 -12.33980 -12.29051 -12.05279 -11.88084 -11.56711 -11.41549 -11.34232 -11.31685 -11.16003 -10.67705 -10.41062 -9.45697 -8.25861 -6.36457 1.37525 1.38732 1.52747 2.37361 2.53635 3.06756 3.35723 3.53482 3.94715 3.96684 3.99166 4.07361 4.23284 4.33708 4.49832 4.52582 4.55863 4.62191 4.70416 4.75180 4.76606 4.84098 4.88100 4.93920 4.98163 5.00097 5.05055 5.10960 5.13978 5.24536 5.29125 5.39098 5.52270 5.53994 5.56339 5.78045 6.12317 6.36984 6.45544 6.78969 7.33568 8.86159 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.037749 B = 0.003608 C = 0.003377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.573241 B = 7757.910792 C = 8289.342739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.145 4.145 4 C -0.105 4.105 5 C -0.115 4.115 6 C 0.053 3.947 7 O -0.378 6.378 8 C 0.082 3.918 9 C -0.002 4.002 10 N -0.496 5.496 11 C 0.173 3.827 12 C -0.529 4.529 13 H 0.055 0.945 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.972 3.028 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.273 1.273 20 C -0.005 4.005 21 H 0.054 0.946 22 H 0.058 0.942 23 H 0.049 0.951 24 H 0.068 0.932 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.102 0.898 35 H 0.068 0.932 36 H 0.074 0.926 37 H 0.000 1.000 38 H -0.021 1.021 39 H 0.266 0.734 40 H 0.089 0.911 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.449 21.243 -8.500 23.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.023 4.023 7 O -0.297 6.297 8 C 0.023 3.977 9 C -0.132 4.132 10 N -0.219 5.219 11 C 0.046 3.954 12 C -0.567 4.567 13 H 0.073 0.927 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.796 3.204 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.199 1.199 20 C -0.134 4.134 21 H 0.074 0.926 22 H 0.077 0.923 23 H 0.068 0.932 24 H 0.086 0.914 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.018 0.982 38 H -0.003 1.003 39 H 0.075 0.925 40 H 0.107 0.893 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.852 20.925 -9.070 23.545 hybrid contribution -0.179 -0.703 1.333 1.517 sum 5.673 20.221 -7.738 22.382 Atomic orbital electron populations 1.21921 0.95536 1.01596 1.01903 1.21108 0.95787 0.96671 0.97995 1.21823 1.01187 0.95232 1.02011 1.21531 1.01449 0.92831 0.98484 1.21551 1.01518 0.95446 0.96778 1.22814 0.99440 0.80874 0.99171 1.87944 1.78551 1.21401 1.41840 1.23395 0.95496 0.91430 0.87364 1.24245 0.99659 0.93172 0.96105 1.68541 1.19737 1.02852 1.30760 1.19902 0.95968 0.89201 0.90320 1.21418 0.98467 1.07628 1.29228 0.92655 1.25941 1.02215 0.94839 0.96600 1.70079 1.37244 1.11582 1.38357 0.85303 0.78759 0.78299 0.78075 1.19057 1.20178 1.19851 1.24219 0.91710 0.94895 1.02554 0.92646 0.92327 0.93235 0.91352 0.92227 0.92362 0.92557 0.91514 0.90869 0.91682 0.92063 0.92951 0.91825 0.87995 0.91364 0.90763 0.98214 1.00283 0.92496 0.89266 0.90317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 8.95 71.98 0.64 -1.66 16 2 C -0.10 -1.37 2.92 -10.80 -0.03 -1.40 16 3 C -0.15 -1.68 9.19 71.98 0.66 -1.01 16 4 C -0.11 -1.58 4.68 30.59 0.14 -1.43 16 5 C -0.12 -2.32 5.34 30.59 0.16 -2.16 16 6 C 0.05 1.21 5.79 71.98 0.42 1.63 16 7 O -0.38 -12.19 10.36 -148.98 -1.54 -13.73 16 8 C 0.08 2.64 4.48 31.24 0.14 2.78 16 9 C 0.00 -0.10 7.32 86.36 0.63 0.53 16 10 N -0.50 -23.49 6.25 -915.58 -5.72 -29.21 16 11 C 0.17 9.73 4.58 85.56 0.39 10.12 16 12 C -0.53 -31.58 8.84 25.60 0.23 -31.35 16 13 H 0.06 3.30 7.80 -2.91 -0.02 3.28 16 14 C 0.00 0.13 5.46 84.66 0.46 0.60 16 15 N -0.93 -57.25 13.29 21.45 0.28 -56.97 16 16 Si 0.97 45.50 29.54 68.60 2.03 47.52 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 C 0.00 -0.18 7.81 86.41 0.67 0.50 16 21 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.05 0.86 6.56 -2.39 -0.02 0.84 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.06 1.39 6.56 -2.39 -0.02 1.37 16 32 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.10 2.55 7.89 -2.39 -0.02 2.53 16 35 H 0.07 2.77 7.79 -2.39 -0.02 2.75 16 36 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H -0.02 -1.19 7.70 -2.39 -0.02 -1.21 16 39 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 40 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.08 2.81 7.79 -2.39 -0.02 2.79 16 Total: -1.00 -67.78 330.51 0.52 -67.27 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 0.95 Total: 7.99 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.52 Total: -22.87 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -5.44 Total: -86.18 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: -1.54 Total: -13.73 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.52 kcal Total: -67.78 0.52 -67.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205976707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.839 kcal (2) G-P(sol) polarization free energy of solvation -67.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds