Wall clock time and date at job start Sun Mar 29 2020 22:45:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.53004 * 109.47334 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99899 * 269.99500 * 5 4 3 7 7 H 1.07998 * 119.99800 * 8.84650 * 6 5 4 8 8 C 1.38813 * 119.99842 * 188.84183 * 6 5 4 9 9 N 1.31621 * 119.99877 * 25.52512 * 8 6 5 10 10 Si 1.86791 * 119.99790 * 205.52084 * 8 6 5 11 11 H 1.48503 * 109.47396 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47344 * 120.00218 * 10 8 6 13 13 H 1.48500 * 109.47460 * 240.00344 * 10 8 6 14 14 C 1.46499 * 120.00067 * 90.00618 * 5 4 3 15 15 C 1.52997 * 109.47420 * 87.39587 * 14 5 4 16 16 H 1.08995 * 109.52171 * 54.18639 * 15 14 5 17 17 C 1.53181 * 109.57473 * 174.34531 * 15 14 5 18 18 C 1.53177 * 109.03817 * 176.91820 * 17 15 14 19 19 C 1.53093 * 109.16066 * 303.01683 * 18 17 15 20 20 O 1.42907 * 109.41478 * 57.61234 * 19 18 17 21 21 C 1.42911 * 114.09428 * 298.83761 * 20 19 18 22 22 H 1.09005 * 109.47160 * 299.99553 * 1 2 3 23 23 H 1.09003 * 109.47862 * 59.99832 * 1 2 3 24 24 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47160 * 240.00447 * 2 1 3 26 26 H 1.09000 * 109.47140 * 120.00194 * 2 1 3 27 27 H 1.09005 * 109.46653 * 60.00137 * 3 2 1 28 28 H 1.09000 * 109.47186 * 300.00166 * 3 2 1 29 29 H 1.09003 * 109.46843 * 59.99985 * 4 3 2 30 30 H 1.09000 * 109.47087 * 300.00187 * 4 3 2 31 31 H 0.97003 * 119.99390 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46724 * 327.39180 * 14 5 4 33 33 H 1.09005 * 109.47028 * 207.39916 * 14 5 4 34 34 H 1.09010 * 109.53898 * 296.78301 * 17 15 14 35 35 H 1.08998 * 109.54282 * 57.04960 * 17 15 14 36 36 H 1.09000 * 109.52601 * 183.11063 * 18 17 15 37 37 H 1.08999 * 109.57544 * 62.95380 * 18 17 15 38 38 H 1.08997 * 109.48215 * 297.62444 * 19 18 17 39 39 H 1.09000 * 109.48804 * 177.59351 * 19 18 17 40 40 H 1.08997 * 109.48110 * 301.17852 * 21 20 19 41 41 H 1.09003 * 109.48460 * 181.14679 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2860 3.4699 -1.1857 7 1 3.9733 3.0183 -2.1156 8 6 4.9187 4.7055 -1.1924 9 7 5.7276 5.0359 -0.2080 10 14 4.6223 5.8990 -2.5983 11 1 3.6781 5.2931 -3.5713 12 1 4.0427 7.1579 -2.0651 13 1 5.9099 6.1951 -3.2762 14 6 4.3030 3.5135 1.2690 15 6 5.7279 3.2200 1.7426 16 1 6.4342 3.4762 0.9529 17 6 6.0345 4.0502 2.9928 18 6 7.4340 3.6901 3.5009 19 6 7.4980 2.1849 3.7729 20 8 7.1727 1.4720 2.5778 21 6 5.8578 1.7329 2.0825 22 1 -0.3634 0.5138 0.8901 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9288 -0.8909 30 1 3.9337 0.9285 0.8891 31 1 6.1700 5.8992 -0.2129 32 1 3.5919 3.1620 2.0166 33 1 4.1809 4.5875 1.1282 34 1 5.9986 5.1109 2.7440 35 1 5.2982 3.8305 3.7660 36 1 7.6387 4.2358 4.4220 37 1 8.1756 3.9560 2.7476 38 1 6.7852 1.9264 4.5559 39 1 8.5043 1.9159 4.0940 40 1 5.1236 1.4685 2.8434 41 1 5.6825 1.1384 1.1858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207470892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:34 Heat of formation + Delta-G solvation = -45.034712 kcal Electronic energy + Delta-G solvation = -18692.589454 eV Core-core repulsion = 15993.529776 eV Total energy + Delta-G solvation = -2699.059677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.70728 -36.40919 -34.34605 -32.74181 -31.32025 -30.48471 -27.86180 -25.48861 -24.37545 -23.78957 -21.84885 -20.77539 -19.92761 -19.12601 -16.61253 -15.50426 -15.38630 -14.90748 -14.82227 -13.96399 -13.78105 -13.65424 -13.46069 -13.31950 -12.49267 -12.27200 -11.93252 -11.81101 -11.54937 -11.32638 -11.19088 -10.73994 -10.66941 -10.52084 -10.51303 -10.31479 -10.25558 -10.01611 -9.78222 -9.66677 -9.61250 -9.14328 -8.69022 -8.23633 -6.80164 -5.70590 -3.02426 3.41046 3.50703 3.52150 4.54067 4.55472 5.21424 5.36098 5.39416 5.44892 5.53259 5.56795 5.57440 5.74566 5.90155 5.93564 6.00340 6.10028 6.13144 6.22099 6.27221 6.30180 6.33943 6.39384 6.45205 6.58200 6.60931 6.70834 6.73091 6.82961 6.93853 7.05636 7.19880 7.24944 7.64493 7.77030 7.91907 8.20222 8.38202 9.29587 9.91993 10.37200 11.30857 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.010629 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.647524 B = 2633.727452 C = 4393.712769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.138 4.138 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.245 4.245 7 H 0.072 0.928 8 C -0.002 4.002 9 N -0.893 5.893 10 Si 0.891 3.109 11 H -0.281 1.281 12 H -0.292 1.292 13 H -0.294 1.294 14 C 0.187 3.813 15 C -0.124 4.124 16 H 0.127 0.873 17 C -0.105 4.105 18 C -0.151 4.151 19 C 0.065 3.935 20 O -0.392 6.392 21 C 0.063 3.937 22 H 0.050 0.950 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.043 0.957 30 H 0.039 0.961 31 H 0.249 0.751 32 H 0.004 0.996 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.038 0.962 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.641 -5.548 6.205 8.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.178 4.178 4 C 0.018 3.982 5 N -0.320 5.320 6 C -0.374 4.374 7 H 0.090 0.910 8 C -0.199 4.199 9 N -0.540 5.540 10 Si 0.721 3.279 11 H -0.207 1.207 12 H -0.218 1.218 13 H -0.222 1.222 14 C 0.061 3.939 15 C -0.145 4.145 16 H 0.145 0.855 17 C -0.143 4.143 18 C -0.189 4.189 19 C -0.013 4.013 20 O -0.311 6.311 21 C -0.013 4.013 22 H 0.069 0.931 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.430 -5.525 6.111 8.589 hybrid contribution -0.323 0.954 -0.518 1.132 sum -2.753 -4.571 5.593 7.730 Atomic orbital electron populations 1.21763 0.96746 1.00595 1.01551 1.21505 0.95065 0.98338 1.01223 1.22233 0.99532 0.94437 1.01614 1.20902 0.91488 0.86920 0.98936 1.44161 1.75705 1.09263 1.02917 1.19268 1.31963 1.00200 0.85933 0.91000 1.24663 0.98099 0.99433 0.97716 1.70154 1.28698 1.21540 1.33572 0.86390 0.77532 0.81923 0.82052 1.20669 1.21849 1.22178 1.20621 0.90643 0.98446 0.84206 1.22573 1.03335 0.90878 0.97709 0.85528 1.21464 0.94113 1.01348 0.97373 1.22144 0.99716 0.96249 1.00816 1.22426 0.99560 0.91926 0.87340 1.87866 1.34229 1.66994 1.42036 1.23015 0.81904 0.99204 0.97211 0.93124 0.92999 0.93560 0.92513 0.92710 0.93079 0.92251 0.93833 0.94314 0.94007 0.97812 0.90129 0.91513 0.94361 0.92541 0.91242 0.94401 0.90286 0.95692 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.15 0.37 -1.50 16 2 C -0.12 -1.76 5.93 -26.74 -0.16 -1.92 16 3 C -0.14 -2.43 5.54 -26.73 -0.15 -2.58 16 4 C 0.14 2.89 4.81 -4.04 -0.02 2.87 16 5 N -0.60 -14.28 2.42 -173.24 -0.42 -14.70 16 6 C -0.24 -6.47 9.69 -15.06 -0.15 -6.61 16 7 H 0.07 1.90 7.95 -52.49 -0.42 1.48 16 8 C 0.00 -0.06 4.87 -17.43 -0.08 -0.15 16 9 N -0.89 -24.07 8.38 55.49 0.46 -23.61 16 10 Si 0.89 21.43 29.62 -169.99 -5.04 16.39 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 C 0.19 4.30 4.42 -4.04 -0.02 4.28 16 15 C -0.12 -2.71 1.91 -90.48 -0.17 -2.88 16 16 H 0.13 3.32 6.09 -51.93 -0.32 3.00 16 17 C -0.10 -1.99 5.32 -26.55 -0.14 -2.14 16 18 C -0.15 -2.54 6.14 -26.59 -0.16 -2.70 16 19 C 0.06 1.05 6.84 37.21 0.25 1.31 16 20 O -0.39 -7.80 10.77 -35.23 -0.38 -8.18 16 21 C 0.06 1.26 5.00 37.20 0.19 1.44 16 22 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.88 8.04 -51.93 -0.42 0.47 16 30 H 0.04 0.74 5.70 -51.93 -0.30 0.44 16 31 H 0.25 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.00 0.08 8.09 -51.93 -0.42 -0.34 16 33 H 0.08 2.08 6.15 -51.93 -0.32 1.76 16 34 H 0.07 1.35 8.14 -51.92 -0.42 0.92 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 1.93 5.90 -51.93 -0.31 1.63 16 LS Contribution 313.10 15.07 4.72 4.72 Total: -1.00 -26.96 313.10 -8.44 -35.40 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.55 Total: 0.55 kcal Atomic # 6 Polarization: -10.32 SS G_CDS: -0.24 Total: -10.57 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.05 Total: -38.31 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.38 Total: -8.18 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.39 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.96 -8.44 -35.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207470892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.638 kcal (2) G-P(sol) polarization free energy of solvation -26.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds