Wall clock time and date at job start Sun Mar 29 2020 22:45:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47292 * 2 1 4 4 C 1.53004 * 109.47334 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.46806 * 180.02562 * 4 3 2 6 6 C 1.36944 * 119.99899 * 269.99500 * 5 4 3 7 7 H 1.07998 * 119.99800 * 8.84650 * 6 5 4 8 8 C 1.38813 * 119.99842 * 188.84183 * 6 5 4 9 9 N 1.31621 * 119.99877 * 25.52512 * 8 6 5 10 10 Si 1.86791 * 119.99790 * 205.52084 * 8 6 5 11 11 H 1.48503 * 109.47396 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.47344 * 120.00218 * 10 8 6 13 13 H 1.48500 * 109.47460 * 240.00344 * 10 8 6 14 14 C 1.46499 * 120.00067 * 90.00618 * 5 4 3 15 15 C 1.52997 * 109.47420 * 87.39587 * 14 5 4 16 16 H 1.08995 * 109.52171 * 54.18639 * 15 14 5 17 17 C 1.53181 * 109.57473 * 174.34531 * 15 14 5 18 18 C 1.53177 * 109.03817 * 176.91820 * 17 15 14 19 19 C 1.53093 * 109.16066 * 303.01683 * 18 17 15 20 20 O 1.42907 * 109.41478 * 57.61234 * 19 18 17 21 21 C 1.42911 * 114.09428 * 298.83761 * 20 19 18 22 22 H 1.09005 * 109.47160 * 299.99553 * 1 2 3 23 23 H 1.09003 * 109.47862 * 59.99832 * 1 2 3 24 24 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47160 * 240.00447 * 2 1 3 26 26 H 1.09000 * 109.47140 * 120.00194 * 2 1 3 27 27 H 1.09005 * 109.46653 * 60.00137 * 3 2 1 28 28 H 1.09000 * 109.47186 * 300.00166 * 3 2 1 29 29 H 1.09003 * 109.46843 * 59.99985 * 4 3 2 30 30 H 1.09000 * 109.47087 * 300.00187 * 4 3 2 31 31 H 0.97003 * 119.99390 * 179.97438 * 9 8 6 32 32 H 1.09002 * 109.46724 * 327.39180 * 14 5 4 33 33 H 1.09005 * 109.47028 * 207.39916 * 14 5 4 34 34 H 1.09010 * 109.53898 * 296.78301 * 17 15 14 35 35 H 1.08998 * 109.54282 * 57.04960 * 17 15 14 36 36 H 1.09000 * 109.52601 * 183.11063 * 18 17 15 37 37 H 1.08999 * 109.57544 * 62.95380 * 18 17 15 38 38 H 1.08997 * 109.48215 * 297.62444 * 19 18 17 39 39 H 1.09000 * 109.48804 * 177.59351 * 19 18 17 40 40 H 1.08997 * 109.48110 * 301.17852 * 21 20 19 41 41 H 1.09003 * 109.48460 * 181.14679 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0582 2.8237 0.0000 6 6 4.2860 3.4699 -1.1857 7 1 3.9733 3.0183 -2.1156 8 6 4.9187 4.7055 -1.1924 9 7 5.7276 5.0359 -0.2080 10 14 4.6223 5.8990 -2.5983 11 1 3.6781 5.2931 -3.5713 12 1 4.0427 7.1579 -2.0651 13 1 5.9099 6.1951 -3.2762 14 6 4.3030 3.5135 1.2690 15 6 5.7279 3.2200 1.7426 16 1 6.4342 3.4762 0.9529 17 6 6.0345 4.0502 2.9928 18 6 7.4340 3.6901 3.5009 19 6 7.4980 2.1849 3.7729 20 8 7.1727 1.4720 2.5778 21 6 5.8578 1.7329 2.0825 22 1 -0.3634 0.5138 0.8901 23 1 -0.3635 0.5138 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5138 -0.8901 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9564 -0.8900 29 1 3.9329 0.9288 -0.8909 30 1 3.9337 0.9285 0.8891 31 1 6.1700 5.8992 -0.2129 32 1 3.5919 3.1620 2.0166 33 1 4.1809 4.5875 1.1282 34 1 5.9986 5.1109 2.7440 35 1 5.2982 3.8305 3.7660 36 1 7.6387 4.2358 4.4220 37 1 8.1756 3.9560 2.7476 38 1 6.7852 1.9264 4.5559 39 1 8.5043 1.9159 4.0940 40 1 5.1236 1.4685 2.8434 41 1 5.6825 1.1384 1.1858 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207470892.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:33 Heat of formation + Delta-G solvation = -58.714472 kcal Electronic energy + Delta-G solvation = -18693.182653 eV Core-core repulsion = 15993.529776 eV Total energy + Delta-G solvation = -2699.652876 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.25759 -38.07477 -35.77887 -34.31861 -33.14621 -31.99571 -29.38941 -27.27676 -25.90391 -25.38266 -23.31046 -22.19976 -21.55570 -20.71069 -18.52541 -17.14492 -16.92286 -16.61531 -16.19610 -15.62216 -15.35223 -15.22351 -15.12169 -14.61846 -13.97179 -13.72438 -13.48033 -13.29248 -13.15504 -12.93074 -12.85140 -12.55346 -12.18934 -12.00856 -11.91611 -11.91334 -11.85506 -11.59909 -11.40736 -11.34809 -11.18000 -10.81884 -10.45758 -10.02324 -8.71127 -7.72826 -5.05576 1.45521 1.50687 1.58027 2.56685 3.12661 3.31365 3.67495 4.10838 4.16968 4.17124 4.24112 4.30059 4.37971 4.45576 4.48929 4.57356 4.69911 4.75781 4.87130 4.89736 4.92725 4.96373 5.04587 5.07848 5.09230 5.18455 5.22098 5.28895 5.39913 5.49765 5.51897 5.60756 5.65425 5.70219 5.80931 6.32220 6.38434 6.45792 7.28499 7.99552 8.39412 9.24725 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013326 B = 0.010629 C = 0.006371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.647524 B = 2633.727452 C = 4393.712769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C -0.127 4.127 4 C 0.143 3.857 5 N -0.613 5.613 6 C -0.254 4.254 7 H 0.065 0.935 8 C -0.046 4.046 9 N -0.904 5.904 10 Si 0.944 3.056 11 H -0.277 1.277 12 H -0.295 1.295 13 H -0.300 1.300 14 C 0.193 3.807 15 C -0.116 4.116 16 H 0.081 0.919 17 C -0.102 4.102 18 C -0.146 4.146 19 C 0.059 3.941 20 O -0.412 6.412 21 C 0.073 3.927 22 H 0.052 0.948 23 H 0.047 0.953 24 H 0.066 0.934 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.046 0.954 28 H 0.039 0.961 29 H 0.035 0.965 30 H 0.053 0.947 31 H 0.243 0.757 32 H 0.020 0.980 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.045 0.955 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.207 -6.722 7.642 10.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.156 4.156 3 C -0.167 4.167 4 C 0.017 3.983 5 N -0.335 5.335 6 C -0.384 4.384 7 H 0.083 0.917 8 C -0.241 4.241 9 N -0.551 5.551 10 Si 0.775 3.225 11 H -0.202 1.202 12 H -0.222 1.222 13 H -0.227 1.227 14 C 0.067 3.933 15 C -0.137 4.137 16 H 0.099 0.901 17 C -0.140 4.140 18 C -0.184 4.184 19 C -0.017 4.017 20 O -0.331 6.331 21 C -0.003 4.003 22 H 0.071 0.929 23 H 0.066 0.934 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.107 0.893 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.063 0.937 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.009 -6.719 7.551 10.546 hybrid contribution -0.127 1.297 -0.946 1.611 sum -3.136 -5.422 6.605 9.102 Atomic orbital electron populations 1.21735 0.95170 1.01981 1.01508 1.21459 0.96416 0.95719 1.01995 1.22059 0.97454 0.96752 1.00408 1.21048 0.92971 0.85075 0.99190 1.44336 1.76043 1.10691 1.02401 1.19415 1.31499 1.00713 0.86773 0.91696 1.25228 0.98471 1.00613 0.99830 1.70342 1.29042 1.21097 1.34626 0.85549 0.76895 0.80035 0.80021 1.20227 1.22234 1.22749 1.20483 0.91952 0.96483 0.84354 1.22272 1.01047 0.92795 0.97597 0.90134 1.21399 0.96317 0.99623 0.96661 1.22107 0.97355 0.97405 1.01532 1.22708 1.01725 0.90866 0.86410 1.87838 1.33863 1.67660 1.43761 1.22780 0.82882 0.97337 0.97317 0.92896 0.93390 0.91460 0.92186 0.91509 0.93509 0.94197 0.94622 0.92910 0.94746 0.96198 0.93463 0.93507 0.92426 0.89277 0.93379 0.92241 0.87628 0.93696 0.90628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 9.91 71.98 0.71 -2.60 16 2 C -0.12 -3.12 5.93 30.59 0.18 -2.94 16 3 C -0.13 -4.37 5.54 30.60 0.17 -4.20 16 4 C 0.14 5.68 4.81 86.38 0.42 6.10 16 5 N -0.61 -29.61 2.42 -702.00 -1.70 -31.31 16 6 C -0.25 -13.73 9.69 84.03 0.81 -12.92 16 7 H 0.07 3.52 7.95 -2.91 -0.02 3.49 16 8 C -0.05 -2.52 4.87 84.86 0.41 -2.10 16 9 N -0.90 -50.33 8.38 21.65 0.18 -50.15 16 10 Si 0.94 45.12 29.62 68.60 2.03 47.15 16 11 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 12 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 13 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 14 C 0.19 8.97 4.42 86.38 0.38 9.35 16 15 C -0.12 -5.08 1.91 -10.70 -0.02 -5.10 16 16 H 0.08 4.35 6.09 -2.39 -0.01 4.34 16 17 C -0.10 -3.79 5.32 30.71 0.16 -3.62 16 18 C -0.15 -4.62 6.14 30.68 0.19 -4.43 16 19 C 0.06 1.74 6.84 72.01 0.49 2.24 16 20 O -0.41 -15.69 10.77 -148.98 -1.60 -17.30 16 21 C 0.07 2.85 5.00 72.01 0.36 3.21 16 22 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 23 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.45 8.04 -2.39 -0.02 1.43 16 30 H 0.05 1.94 5.70 -2.39 -0.01 1.93 16 31 H 0.24 13.38 8.31 -92.71 -0.77 12.61 16 32 H 0.02 0.84 8.09 -2.39 -0.02 0.82 16 33 H 0.05 2.50 6.15 -2.38 -0.01 2.49 16 34 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 3.17 5.90 -2.39 -0.01 3.15 16 Total: -1.00 -58.93 313.10 4.14 -54.79 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.96 Total: 13.83 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: 4.27 Total: -17.01 kcal Atomic # 7 Polarization: -79.95 SS G_CDS: -1.52 Total: -81.46 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -1.60 Total: -17.30 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -58.93 4.14 -54.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207470892.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.926 kcal (2) G-P(sol) polarization free energy of solvation -58.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds