Wall clock time and date at job start Sun Mar 29 2020 22:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53000 * 109.46925 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47412 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00185 * 270.00436 * 5 4 3 7 7 H 1.08001 * 119.99518 * 322.62429 * 6 5 4 8 8 C 1.38805 * 120.00487 * 142.62429 * 6 5 4 9 9 N 1.31625 * 120.00179 * 160.29266 * 8 6 5 10 10 Si 1.86803 * 119.99918 * 340.29627 * 8 6 5 11 11 H 1.48501 * 109.47033 * 95.29869 * 10 8 6 12 12 H 1.48506 * 109.47260 * 215.29589 * 10 8 6 13 13 H 1.48493 * 109.47085 * 335.29664 * 10 8 6 14 14 C 1.46505 * 119.99897 * 89.99196 * 5 4 3 15 15 C 1.53000 * 109.46628 * 84.09405 * 14 5 4 16 16 H 1.09000 * 109.52113 * 302.19277 * 15 14 5 17 17 C 1.53178 * 109.52218 * 182.01016 * 15 14 5 18 18 C 1.53171 * 109.03587 * 183.10961 * 17 15 14 19 19 C 1.53095 * 109.16514 * 56.98428 * 18 17 15 20 20 O 1.42907 * 109.40910 * 302.38784 * 19 18 17 21 21 C 1.42898 * 114.10038 * 61.15785 * 20 19 18 22 22 H 1.09000 * 109.46824 * 299.99957 * 1 2 3 23 23 H 1.08997 * 109.47654 * 59.99848 * 1 2 3 24 24 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46824 * 240.00043 * 2 1 3 26 26 H 1.08994 * 109.47168 * 120.00321 * 2 1 3 27 27 H 1.09000 * 109.47235 * 60.00295 * 3 2 1 28 28 H 1.08998 * 109.47060 * 299.99784 * 3 2 1 29 29 H 1.09007 * 109.46760 * 299.99833 * 4 3 2 30 30 H 1.09000 * 109.47187 * 59.99943 * 4 3 2 31 31 H 0.97001 * 119.99933 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.46882 * 204.08779 * 14 5 4 33 33 H 1.08999 * 109.47446 * 324.08869 * 14 5 4 34 34 H 1.08997 * 109.54090 * 302.97735 * 17 15 14 35 35 H 1.09003 * 109.54501 * 63.23704 * 17 15 14 36 36 H 1.08994 * 109.52524 * 297.07214 * 18 17 15 37 37 H 1.09005 * 109.57246 * 176.91768 * 18 17 15 38 38 H 1.08999 * 109.47972 * 182.41341 * 19 18 17 39 39 H 1.08991 * 109.49392 * 62.37597 * 19 18 17 40 40 H 1.08995 * 109.48488 * 178.85597 * 21 20 19 41 41 H 1.09004 * 109.48837 * 58.82809 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1874 7 1 4.6964 2.9269 -2.0268 8 6 3.9897 4.8192 -1.3111 9 7 4.5429 5.5292 -2.2715 10 14 2.8056 5.6289 -0.1146 11 1 3.5726 6.2675 0.9850 12 1 2.0099 6.6606 -0.8272 13 1 1.8929 4.6024 0.4496 14 6 4.3030 3.5146 1.2672 15 6 5.6981 3.1555 1.7827 16 1 5.7758 2.0747 1.9007 17 6 5.9359 3.8375 3.1335 18 6 7.3623 3.5343 3.6020 19 6 8.3527 4.0025 2.5326 20 8 8.0566 3.3534 1.2943 21 6 6.7528 3.6382 0.7835 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9336 0.9284 0.8892 30 1 3.9329 0.9287 -0.8908 31 1 4.3355 6.4728 -2.3582 32 1 4.2390 4.5917 1.1124 33 1 3.5552 3.2075 1.9984 34 1 5.8087 4.9146 3.0255 35 1 5.2230 3.4565 3.8649 36 1 7.4743 2.4614 3.7576 37 1 7.5594 4.0603 4.5362 38 1 9.3672 3.7505 2.8415 39 1 8.2686 5.0818 2.4065 40 1 6.6146 3.1240 -0.1676 41 1 6.6473 4.7128 0.6344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207470896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:36 Heat of formation + Delta-G solvation = -52.565823 kcal Electronic energy + Delta-G solvation = -18644.668368 eV Core-core repulsion = 15945.282118 eV Total energy + Delta-G solvation = -2699.386251 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.94805 -36.59344 -34.40318 -33.12612 -31.62487 -30.75063 -28.14115 -25.75605 -24.42879 -23.99326 -22.12958 -20.95806 -20.00362 -19.44978 -16.80932 -15.90092 -15.41755 -15.11947 -14.76074 -14.37035 -14.13278 -14.00317 -13.53048 -13.22332 -12.68203 -12.35587 -12.30334 -12.10226 -12.03287 -11.77565 -11.12235 -11.09610 -10.86044 -10.74673 -10.68109 -10.56778 -10.40996 -10.09951 -9.85610 -9.74201 -9.69499 -9.46077 -8.86273 -8.52949 -6.81681 -5.99026 -3.41203 3.27637 3.45134 3.49887 4.45966 4.50323 4.87998 5.14012 5.20722 5.23811 5.35693 5.37166 5.48167 5.55721 5.56491 5.70212 5.86794 5.92038 5.98241 6.06486 6.12397 6.18691 6.21476 6.22425 6.30110 6.31397 6.34628 6.43082 6.47977 6.53348 6.59187 6.64769 6.91123 6.96966 7.07951 7.10961 7.81459 8.06188 8.38274 8.99137 9.71151 10.12829 11.16377 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.008982 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.275926 B = 3116.434360 C = 3947.423807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.152 3.848 5 N -0.607 5.607 6 C -0.263 4.263 7 H 0.081 0.919 8 C 0.036 3.964 9 N -0.901 5.901 10 Si 0.875 3.125 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.267 1.267 14 C 0.143 3.857 15 C -0.135 4.135 16 H 0.068 0.932 17 C -0.120 4.120 18 C -0.151 4.151 19 C 0.060 3.940 20 O -0.392 6.392 21 C 0.079 3.921 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.262 0.738 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.082 0.918 39 H 0.044 0.956 40 H 0.116 0.884 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.049 -5.929 10.025 11.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.026 3.974 5 N -0.328 5.328 6 C -0.391 4.391 7 H 0.098 0.902 8 C -0.165 4.165 9 N -0.542 5.542 10 Si 0.706 3.294 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.192 1.192 14 C 0.017 3.983 15 C -0.156 4.156 16 H 0.087 0.913 17 C -0.158 4.158 18 C -0.189 4.189 19 C -0.018 4.018 20 O -0.310 6.310 21 C 0.003 3.997 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.062 0.938 40 H 0.134 0.866 41 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.091 -5.891 9.807 11.441 hybrid contribution -1.035 0.916 0.871 1.633 sum -0.944 -4.975 10.678 11.818 Atomic orbital electron populations 1.21769 0.96778 1.00591 1.01597 1.21502 0.95093 0.98217 1.01202 1.22224 0.99373 0.94614 1.01811 1.20903 0.91045 0.86508 0.98984 1.44178 1.75397 1.11414 1.01846 1.18782 1.36829 0.92887 0.90640 0.90164 1.25461 0.97731 0.97034 0.96232 1.69837 1.42875 1.07393 1.34133 0.86975 0.83015 0.78890 0.80549 1.21657 1.23188 1.19174 1.21159 0.92331 0.96982 0.87838 1.22338 0.98858 1.00250 0.94178 0.91311 1.21644 0.95887 1.00732 0.97577 1.22149 0.96321 1.01856 0.98595 1.22454 0.97943 0.96267 0.85095 1.87912 1.34714 1.71463 1.36960 1.22656 0.79478 1.00241 0.97293 0.93245 0.92884 0.93520 0.92336 0.92808 0.93381 0.91767 0.94518 0.93068 0.92774 0.92535 0.94476 0.92233 0.92171 0.91503 0.91792 0.89951 0.93817 0.86628 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.91 37.16 0.37 -1.57 16 2 C -0.12 -1.75 5.93 -26.73 -0.16 -1.91 16 3 C -0.14 -2.53 5.54 -26.73 -0.15 -2.67 16 4 C 0.15 2.93 5.69 -4.04 -0.02 2.91 16 5 N -0.61 -13.75 1.82 -173.23 -0.32 -14.06 16 6 C -0.26 -6.98 8.38 -15.06 -0.13 -7.11 16 7 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 8 C 0.04 1.00 5.32 -17.43 -0.09 0.90 16 9 N -0.90 -26.83 13.97 55.49 0.78 -26.05 16 10 Si 0.87 21.96 24.84 -169.99 -4.22 17.73 16 11 H -0.29 -7.06 6.70 56.52 0.38 -6.68 16 12 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 13 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 14 C 0.14 3.01 3.75 -4.04 -0.02 3.00 16 15 C -0.14 -2.53 2.61 -90.48 -0.24 -2.77 16 16 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 17 C -0.12 -1.90 5.31 -26.55 -0.14 -2.04 16 18 C -0.15 -2.09 6.14 -26.59 -0.16 -2.25 16 19 C 0.06 0.91 6.84 37.21 0.25 1.16 16 20 O -0.39 -7.55 10.77 -35.23 -0.38 -7.93 16 21 C 0.08 1.64 5.60 37.20 0.21 1.85 16 22 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.04 0.65 8.05 -51.93 -0.42 0.23 16 30 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.06 1.32 3.35 -51.93 -0.17 1.15 16 33 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.12 2.70 6.80 -51.93 -0.35 2.35 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 316.16 15.07 4.76 4.76 Total: -1.00 -28.60 316.16 -7.36 -35.95 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -7.71 Total: 0.10 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: -0.27 Total: -10.51 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.46 Total: -40.12 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -0.38 Total: -7.93 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.22 Total: 17.73 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.60 -7.36 -35.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207470896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.614 kcal (2) G-P(sol) polarization free energy of solvation -28.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds