Wall clock time and date at job start Sun Mar 29 2020 22:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47125 * 2 1 4 4 C 1.53000 * 109.46925 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47412 * 179.97438 * 4 3 2 6 6 C 1.36937 * 120.00185 * 270.00436 * 5 4 3 7 7 H 1.08001 * 119.99518 * 322.62429 * 6 5 4 8 8 C 1.38805 * 120.00487 * 142.62429 * 6 5 4 9 9 N 1.31625 * 120.00179 * 160.29266 * 8 6 5 10 10 Si 1.86803 * 119.99918 * 340.29627 * 8 6 5 11 11 H 1.48501 * 109.47033 * 95.29869 * 10 8 6 12 12 H 1.48506 * 109.47260 * 215.29589 * 10 8 6 13 13 H 1.48493 * 109.47085 * 335.29664 * 10 8 6 14 14 C 1.46505 * 119.99897 * 89.99196 * 5 4 3 15 15 C 1.53000 * 109.46628 * 84.09405 * 14 5 4 16 16 H 1.09000 * 109.52113 * 302.19277 * 15 14 5 17 17 C 1.53178 * 109.52218 * 182.01016 * 15 14 5 18 18 C 1.53171 * 109.03587 * 183.10961 * 17 15 14 19 19 C 1.53095 * 109.16514 * 56.98428 * 18 17 15 20 20 O 1.42907 * 109.40910 * 302.38784 * 19 18 17 21 21 C 1.42898 * 114.10038 * 61.15785 * 20 19 18 22 22 H 1.09000 * 109.46824 * 299.99957 * 1 2 3 23 23 H 1.08997 * 109.47654 * 59.99848 * 1 2 3 24 24 H 1.09001 * 109.47310 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.46824 * 240.00043 * 2 1 3 26 26 H 1.08994 * 109.47168 * 120.00321 * 2 1 3 27 27 H 1.09000 * 109.47235 * 60.00295 * 3 2 1 28 28 H 1.08998 * 109.47060 * 299.99784 * 3 2 1 29 29 H 1.09007 * 109.46760 * 299.99833 * 4 3 2 30 30 H 1.09000 * 109.47187 * 59.99943 * 4 3 2 31 31 H 0.97001 * 119.99933 * 179.97438 * 9 8 6 32 32 H 1.09007 * 109.46882 * 204.08779 * 14 5 4 33 33 H 1.08999 * 109.47446 * 324.08869 * 14 5 4 34 34 H 1.08997 * 109.54090 * 302.97735 * 17 15 14 35 35 H 1.09003 * 109.54501 * 63.23704 * 17 15 14 36 36 H 1.08994 * 109.52524 * 297.07214 * 18 17 15 37 37 H 1.09005 * 109.57246 * 176.91768 * 18 17 15 38 38 H 1.08999 * 109.47972 * 182.41341 * 19 18 17 39 39 H 1.08991 * 109.49392 * 62.37597 * 19 18 17 40 40 H 1.08995 * 109.48488 * 178.85597 * 21 20 19 41 41 H 1.09004 * 109.48837 * 58.82809 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0584 2.8236 -0.0013 6 6 4.2861 3.4688 -1.1874 7 1 4.6964 2.9269 -2.0268 8 6 3.9897 4.8192 -1.3111 9 7 4.5429 5.5292 -2.2715 10 14 2.8056 5.6289 -0.1146 11 1 3.5726 6.2675 0.9850 12 1 2.0099 6.6606 -0.8272 13 1 1.8929 4.6024 0.4496 14 6 4.3030 3.5146 1.2672 15 6 5.6981 3.1555 1.7827 16 1 5.7758 2.0747 1.9007 17 6 5.9359 3.8375 3.1335 18 6 7.3623 3.5343 3.6020 19 6 8.3527 4.0025 2.5326 20 8 8.0566 3.3534 1.2943 21 6 6.7528 3.6382 0.7835 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3634 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9336 0.9284 0.8892 30 1 3.9329 0.9287 -0.8908 31 1 4.3355 6.4728 -2.3582 32 1 4.2390 4.5917 1.1124 33 1 3.5552 3.2075 1.9984 34 1 5.8087 4.9146 3.0255 35 1 5.2230 3.4565 3.8649 36 1 7.4743 2.4614 3.7576 37 1 7.5594 4.0603 4.5362 38 1 9.3672 3.7505 2.8415 39 1 8.2686 5.0818 2.4065 40 1 6.6146 3.1240 -0.1676 41 1 6.6473 4.7128 0.6344 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207470896.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:35 Heat of formation + Delta-G solvation = -69.152412 kcal Electronic energy + Delta-G solvation = -18645.387617 eV Core-core repulsion = 15945.282118 eV Total energy + Delta-G solvation = -2700.105499 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.41881 -38.24575 -35.77825 -34.66968 -33.50885 -32.16967 -29.63601 -27.50937 -25.83654 -25.64129 -23.54573 -22.34241 -21.54197 -20.92353 -18.78083 -17.51549 -16.91980 -16.78200 -16.21677 -15.91658 -15.60116 -15.40822 -15.04917 -14.71794 -14.29501 -14.03036 -13.79348 -13.47524 -13.40738 -13.30937 -12.79755 -12.68871 -12.44399 -12.18233 -12.03282 -11.87905 -11.76139 -11.74845 -11.45421 -11.36791 -11.25542 -11.17178 -10.62678 -10.30473 -8.72478 -8.16254 -5.53854 1.25900 1.38537 1.48507 2.41337 3.00294 3.11773 3.34678 3.89319 3.97082 4.03341 4.08086 4.16349 4.24137 4.36553 4.41696 4.54888 4.57427 4.60728 4.67027 4.73957 4.84379 4.88705 4.96609 4.99613 5.02050 5.05856 5.08101 5.14264 5.16960 5.19773 5.39725 5.40949 5.47015 5.50688 5.61784 5.98411 6.20729 6.35461 7.02205 7.66871 8.09035 9.03528 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017953 B = 0.008982 C = 0.007092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.275926 B = 3116.434360 C = 3947.423807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.149 3.851 5 N -0.617 5.617 6 C -0.238 4.238 7 H 0.042 0.958 8 C -0.017 4.017 9 N -0.950 5.950 10 Si 0.933 3.067 11 H -0.278 1.278 12 H -0.315 1.315 13 H -0.255 1.255 14 C 0.139 3.861 15 C -0.126 4.126 16 H 0.076 0.924 17 C -0.119 4.119 18 C -0.143 4.143 19 C 0.047 3.953 20 O -0.409 6.409 21 C 0.092 3.908 22 H 0.051 0.949 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.111 0.889 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.590 -7.312 13.382 15.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.172 4.172 4 C 0.024 3.976 5 N -0.340 5.340 6 C -0.368 4.368 7 H 0.059 0.941 8 C -0.213 4.213 9 N -0.595 5.595 10 Si 0.763 3.237 11 H -0.205 1.205 12 H -0.245 1.245 13 H -0.179 1.179 14 C 0.014 3.986 15 C -0.147 4.147 16 H 0.094 0.906 17 C -0.158 4.158 18 C -0.181 4.181 19 C -0.029 4.029 20 O -0.328 6.328 21 C 0.015 3.985 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.082 0.918 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.093 0.907 37 H 0.115 0.885 38 H 0.129 0.871 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -0.456 -7.310 13.208 15.103 hybrid contribution -0.746 1.253 -0.184 1.470 sum -1.202 -6.057 13.024 14.414 Atomic orbital electron populations 1.21755 0.95533 1.02004 1.01323 1.21449 0.96163 0.95523 1.02256 1.22087 0.97962 0.96975 1.00171 1.21034 0.92143 0.84585 0.99828 1.44287 1.75990 1.12467 1.01210 1.18562 1.34535 0.92606 0.91119 0.94057 1.25964 0.99439 0.97785 0.98156 1.69967 1.45066 1.07575 1.36917 0.86020 0.80972 0.77910 0.78794 1.20533 1.24471 1.17906 1.21243 0.94451 0.95500 0.87393 1.22189 0.96324 1.00858 0.95291 0.90555 1.21664 0.98136 0.99942 0.96013 1.22116 0.94094 1.02774 0.99088 1.22822 1.00165 0.96083 0.83852 1.87871 1.33624 1.72043 1.39276 1.22255 0.81469 0.97862 0.96892 0.92958 0.93791 0.91279 0.92131 0.90898 0.93582 0.94783 0.91821 0.94022 0.93137 0.94814 0.92053 0.93054 0.89655 0.90674 0.88499 0.87056 0.94045 0.90418 0.96389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.91 71.98 0.71 -2.74 16 2 C -0.12 -3.03 5.93 30.59 0.18 -2.84 16 3 C -0.13 -4.56 5.54 30.59 0.17 -4.39 16 4 C 0.15 5.60 5.69 86.38 0.49 6.09 16 5 N -0.62 -27.93 1.82 -701.99 -1.28 -29.21 16 6 C -0.24 -13.14 8.38 84.03 0.70 -12.44 16 7 H 0.04 2.57 8.06 -2.91 -0.02 2.54 16 8 C -0.02 -1.01 5.32 84.86 0.45 -0.56 16 9 N -0.95 -59.32 13.97 21.65 0.30 -59.01 16 10 Si 0.93 46.21 24.84 68.60 1.70 47.91 16 11 H -0.28 -13.15 6.70 99.48 0.67 -12.48 16 12 H -0.32 -16.10 7.11 99.48 0.71 -15.40 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 14 C 0.14 5.66 3.75 86.38 0.32 5.98 16 15 C -0.13 -4.50 2.61 -10.70 -0.03 -4.53 16 16 H 0.08 2.64 8.12 -2.39 -0.02 2.62 16 17 C -0.12 -3.38 5.31 30.71 0.16 -3.21 16 18 C -0.14 -3.37 6.14 30.68 0.19 -3.18 16 19 C 0.05 1.32 6.84 72.01 0.49 1.81 16 20 O -0.41 -15.53 10.77 -148.98 -1.60 -17.14 16 21 C 0.09 3.88 5.60 72.01 0.40 4.28 16 22 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 24 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.06 2.06 8.05 -2.38 -0.02 2.04 16 30 H 0.04 1.63 8.04 -2.39 -0.02 1.61 16 31 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 32 H 0.03 1.54 3.35 -2.38 -0.01 1.54 16 33 H 0.06 2.21 8.12 -2.39 -0.02 2.19 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 40 H 0.08 3.82 6.80 -2.39 -0.02 3.80 16 41 H 0.02 0.83 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -64.59 316.16 4.29 -60.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.91 Total: 12.89 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 4.25 Total: -15.74 kcal Atomic # 7 Polarization: -87.25 SS G_CDS: -0.98 Total: -88.22 kcal Atomic # 8 Polarization: -15.53 SS G_CDS: -1.60 Total: -17.14 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 1.70 Total: 47.91 kcal Total: -64.59 4.29 -60.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207470896.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.853 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds