Wall clock time and date at job start Sun Mar 29 2020 22:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47450 * 2 1 4 4 C 1.52994 * 109.47179 * 180.02562 * 3 2 1 5 5 N 1.46901 * 109.47286 * 183.75281 * 4 3 2 6 6 C 1.46900 * 111.00404 * 201.53216 * 5 4 3 7 7 C 1.50696 * 109.47398 * 169.99945 * 6 5 4 8 8 H 1.08004 * 119.99820 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00177 * 180.02562 * 7 6 5 10 10 N 1.31518 * 120.00007 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00076 * 179.97438 * 9 7 6 12 12 H 1.48497 * 109.46871 * 60.00244 * 11 9 7 13 13 H 1.48501 * 109.47141 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47432 * 299.99822 * 11 9 7 15 15 C 1.46900 * 110.99965 * 77.57823 * 5 4 3 16 16 C 1.52999 * 109.47326 * 78.19517 * 15 5 4 17 17 C 1.53007 * 112.99750 * 306.41980 * 16 15 5 18 18 C 1.54037 * 113.92907 * 78.34802 * 16 15 5 19 19 O 1.44181 * 85.51723 * 136.82132 * 18 16 15 20 20 C 1.44186 * 93.33783 * 335.80805 * 19 18 16 21 21 H 1.08997 * 109.46845 * 299.99616 * 1 2 3 22 22 H 1.09003 * 109.46654 * 59.99318 * 1 2 3 23 23 H 1.08999 * 109.47575 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47101 * 240.00230 * 2 1 3 25 25 H 1.08996 * 109.47474 * 120.00695 * 2 1 3 26 26 H 1.09005 * 109.46781 * 60.00034 * 3 2 1 27 27 H 1.08996 * 109.47349 * 300.00771 * 3 2 1 28 28 H 1.08997 * 109.47388 * 63.75127 * 4 3 2 29 29 H 1.09001 * 109.47411 * 303.75454 * 4 3 2 30 30 H 1.09005 * 109.47080 * 290.00360 * 6 5 4 31 31 H 1.09002 * 109.46572 * 49.99673 * 6 5 4 32 32 H 0.96997 * 120.00167 * 179.97438 * 10 9 7 33 33 H 1.08998 * 109.47019 * 318.19296 * 15 5 4 34 34 H 1.09001 * 109.47301 * 198.18867 * 15 5 4 35 35 H 1.09000 * 109.46955 * 304.30962 * 17 16 15 36 36 H 1.09001 * 109.47363 * 64.30643 * 17 16 15 37 37 H 1.08994 * 109.46923 * 184.30843 * 17 16 15 38 38 H 1.08994 * 113.86774 * 250.96685 * 18 16 15 39 39 H 1.09001 * 113.86066 * 22.67648 * 18 16 15 40 40 H 1.08990 * 113.86686 * 270.04258 * 20 19 18 41 41 H 1.09007 * 113.97650 * 138.35209 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0598 2.8244 0.0900 6 6 5.4379 2.9283 -0.4082 7 6 5.8195 4.3810 -0.5309 8 1 5.1092 5.1501 -0.2657 9 6 7.0750 4.7282 -0.9826 10 7 7.9398 3.7916 -1.3060 11 14 7.5477 6.5289 -1.1354 12 1 7.4526 7.1802 0.1957 13 1 8.9409 6.6339 -1.6388 14 1 6.6259 7.2040 -2.0839 15 6 3.9578 3.3299 1.4655 16 6 5.1092 2.7683 2.3020 17 6 5.2039 1.2424 2.2407 18 6 6.4539 3.4846 2.0746 19 8 6.5973 3.4281 3.5082 20 6 5.1756 3.3387 3.7313 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8934 -0.5138 -0.8900 25 1 1.8934 -0.5139 0.8899 26 1 1.6767 1.9563 0.8900 27 1 1.6767 1.9564 -0.8899 28 1 3.9330 0.9880 -0.9225 29 1 3.9338 0.8712 0.8535 30 1 6.1143 2.4325 0.2881 31 1 5.5079 2.4504 -1.3853 32 1 8.8230 4.0358 -1.6241 33 1 3.0078 3.0164 1.8982 34 1 4.0119 4.4185 1.4575 35 1 4.2517 0.8069 2.5434 36 1 5.4372 0.9335 1.2218 37 1 5.9903 0.9000 2.9132 38 1 7.1868 2.8855 1.5343 39 1 6.3537 4.4961 1.6810 40 1 4.6851 4.3056 3.8435 41 1 4.8926 2.6246 4.5047 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207794208.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:49 Heat of formation + Delta-G solvation = -5.921621 kcal Electronic energy + Delta-G solvation = -18921.421112 eV Core-core repulsion = 16224.057506 eV Total energy + Delta-G solvation = -2697.363606 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.40587 -37.14785 -34.50719 -32.65764 -30.85291 -29.07911 -27.39929 -26.22329 -25.57411 -24.09531 -22.64586 -20.73556 -19.97998 -18.24155 -16.35805 -15.70201 -15.57827 -15.26783 -15.05361 -14.61480 -14.09081 -13.78507 -13.61632 -13.02821 -12.68896 -12.25070 -12.10604 -11.71645 -11.65780 -11.41094 -11.23539 -11.07765 -10.92785 -10.81117 -10.65911 -10.45457 -10.38294 -10.20209 -10.04087 -9.80365 -9.54044 -9.14002 -8.95159 -8.41253 -6.99322 -6.05329 -4.04104 3.31955 3.37184 3.39516 4.38091 4.43564 4.76726 4.96283 5.15122 5.28081 5.32001 5.33965 5.37843 5.64002 5.65283 5.70993 5.89700 5.93954 5.97702 5.99323 6.05311 6.06784 6.13267 6.26711 6.30016 6.37613 6.47664 6.54681 6.59092 6.64413 6.73892 6.81917 6.91940 7.14452 7.32610 7.40842 7.79949 8.10900 8.22669 8.56749 9.01168 9.57193 11.04465 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.008069 C = 0.006528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.558422 B = 3469.312494 C = 4288.198376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.124 4.124 3 C -0.111 4.111 4 C 0.023 3.977 5 N -0.532 5.532 6 C 0.176 3.824 7 C -0.504 4.504 8 H 0.061 0.939 9 C 0.059 3.941 10 N -0.894 5.894 11 Si 0.889 3.111 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.078 3.922 16 C -0.157 4.157 17 C -0.131 4.131 18 C 0.065 3.935 19 O -0.405 6.405 20 C 0.042 3.958 21 H 0.051 0.949 22 H 0.052 0.948 23 H 0.048 0.952 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.024 0.976 32 H 0.262 0.738 33 H 0.054 0.946 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.072 0.928 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.493 -5.454 5.771 12.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.149 4.149 4 C -0.105 4.105 5 N -0.255 5.255 6 C 0.052 3.948 7 C -0.543 4.543 8 H 0.079 0.921 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.717 3.283 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.051 4.051 16 C -0.159 4.159 17 C -0.187 4.187 18 C -0.010 4.010 19 O -0.324 6.324 20 C -0.036 4.036 21 H 0.070 0.930 22 H 0.072 0.928 23 H 0.067 0.933 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.367 -5.181 5.536 12.051 hybrid contribution 0.707 0.479 0.128 0.864 sum -8.660 -4.702 5.665 11.366 Atomic orbital electron populations 1.21757 0.96339 1.00946 1.01669 1.21508 0.95357 0.97774 1.01560 1.21580 0.96215 0.95142 1.01994 1.22707 0.94490 0.91862 1.01469 1.62247 1.26502 1.17991 1.18753 1.20122 0.82090 0.97547 0.95071 1.21056 0.97854 0.91950 1.43394 0.92121 1.24922 0.96546 0.97170 0.95616 1.69923 1.06469 1.32254 1.44723 0.86700 0.77483 0.85564 0.78592 1.20180 1.21350 1.20246 1.22062 0.94771 1.00178 0.88079 1.24163 0.99582 0.96708 0.95482 1.21875 1.00638 0.93636 1.02559 1.24572 0.94746 1.02456 0.79200 1.89577 1.22481 1.95660 1.24722 1.23848 0.83593 0.99461 0.96694 0.93000 0.92840 0.93294 0.92282 0.92544 0.92579 0.91904 0.92143 0.92683 0.96789 0.95799 0.92820 0.92787 0.90688 0.92717 0.90711 0.92877 0.88742 0.87596 0.90994 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.91 37.16 0.37 -1.18 16 2 C -0.12 -1.48 5.93 -26.73 -0.16 -1.64 16 3 C -0.11 -1.60 5.38 -26.73 -0.14 -1.75 16 4 C 0.02 0.39 4.23 -3.83 -0.02 0.37 16 5 N -0.53 -10.76 4.62 -236.08 -1.09 -11.85 16 6 C 0.18 4.24 3.91 -4.98 -0.02 4.22 16 7 C -0.50 -13.11 5.84 -34.44 -0.20 -13.31 16 8 H 0.06 1.59 7.16 -52.48 -0.38 1.22 16 9 C 0.06 1.59 5.42 -17.82 -0.10 1.49 16 10 N -0.89 -25.18 13.29 55.43 0.74 -24.44 16 11 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 12 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 15 C 0.08 1.42 4.78 -3.82 -0.02 1.40 16 16 C -0.16 -2.83 0.75 -153.43 -0.11 -2.94 16 17 C -0.13 -2.16 7.02 37.16 0.26 -1.89 16 18 C 0.07 1.40 5.71 37.61 0.21 1.61 16 19 O -0.40 -8.30 12.37 -35.23 -0.44 -8.74 16 20 C 0.04 0.69 8.36 37.61 0.31 1.01 16 21 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.80 6.79 -51.93 -0.35 0.45 16 27 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 28 H 0.06 1.09 7.70 -51.93 -0.40 0.69 16 29 H 0.06 0.89 3.40 -51.93 -0.18 0.71 16 30 H 0.01 0.36 3.13 -51.93 -0.16 0.19 16 31 H 0.02 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.05 0.87 6.59 -51.93 -0.34 0.53 16 34 H 0.07 1.46 7.25 -51.93 -0.38 1.09 16 35 H 0.05 0.78 7.33 -51.93 -0.38 0.40 16 36 H 0.07 1.34 4.78 -51.93 -0.25 1.09 16 37 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 38 H 0.09 2.25 6.84 -51.93 -0.36 1.90 16 39 H 0.11 2.47 6.13 -51.93 -0.32 2.15 16 40 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.08 1.07 8.10 -51.92 -0.42 0.65 16 LS Contribution 304.72 15.07 4.59 4.59 Total: -1.00 -27.49 304.72 -7.66 -35.15 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -6.83 Total: 1.89 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: 0.39 Total: -12.60 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.35 Total: -36.30 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: -0.44 Total: -8.74 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -27.49 -7.66 -35.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207794208.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.224 kcal (2) G-P(sol) polarization free energy of solvation -27.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds