Wall clock time and date at job start Sun Mar 29 2020 22:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.47042 * 2 1 4 4 C 1.52999 * 109.46763 * 179.97438 * 3 2 1 5 5 N 1.46903 * 109.46847 * 181.50823 * 4 3 2 6 6 C 1.46899 * 111.00139 * 62.36414 * 5 4 3 7 7 C 1.50695 * 109.47405 * 66.04319 * 6 5 4 8 8 H 1.08001 * 120.00178 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00029 * 180.02562 * 7 6 5 10 10 N 1.31506 * 120.00395 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99858 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47302 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47434 * 239.99600 * 11 9 7 14 14 H 1.48506 * 109.47005 * 119.99281 * 11 9 7 15 15 C 1.46899 * 110.99883 * 298.40507 * 5 4 3 16 16 C 1.52993 * 109.47389 * 288.44259 * 15 5 4 17 17 H 1.09000 * 110.27564 * 61.71047 * 16 15 5 18 18 C 1.54949 * 110.30979 * 183.80032 * 16 15 5 19 19 C 1.55414 * 100.88981 * 155.28807 * 18 16 15 20 20 C 1.54382 * 102.31180 * 325.99302 * 19 18 16 21 21 O 1.43230 * 107.58718 * 21.28610 * 20 19 18 22 22 H 1.09003 * 109.47232 * 179.97438 * 1 2 3 23 23 H 1.09000 * 109.46783 * 299.99718 * 1 2 3 24 24 H 1.09002 * 109.47010 * 59.99480 * 1 2 3 25 25 H 1.09000 * 109.46783 * 240.00281 * 2 1 3 26 26 H 1.08999 * 109.46684 * 120.00112 * 2 1 3 27 27 H 1.09000 * 109.46590 * 60.00350 * 3 2 1 28 28 H 1.08996 * 109.47013 * 299.99852 * 3 2 1 29 29 H 1.08995 * 109.47050 * 61.50918 * 4 3 2 30 30 H 1.08997 * 109.47446 * 301.50693 * 4 3 2 31 31 H 1.09006 * 109.46656 * 306.04631 * 6 5 4 32 32 H 1.08998 * 109.47476 * 186.04861 * 6 5 4 33 33 H 0.97009 * 119.99629 * 0.02562 * 10 9 7 34 34 H 1.08998 * 109.47077 * 48.44541 * 15 5 4 35 35 H 1.09005 * 109.47167 * 168.44049 * 15 5 4 36 36 H 1.08997 * 111.12888 * 273.28015 * 18 16 15 37 37 H 1.09002 * 111.12204 * 37.44620 * 18 16 15 38 38 H 1.09005 * 110.88137 * 207.75711 * 19 18 16 39 39 H 1.08998 * 110.93721 * 84.25717 * 19 18 16 40 40 H 1.08998 * 109.82696 * 261.76978 * 20 19 18 41 41 H 1.08997 * 109.82828 * 140.80005 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8270 0.0371 6 6 3.6349 3.5034 1.2700 7 6 4.3038 2.8552 2.4546 8 1 4.9775 2.0242 2.3065 9 6 4.0558 3.3231 3.7276 10 7 3.2359 4.3353 3.9081 11 14 4.8855 2.5201 5.1960 12 1 5.7558 1.4116 4.7278 13 1 3.8514 1.9832 6.1166 14 1 5.7098 3.5275 5.9109 15 6 3.6206 3.5721 -1.1503 16 6 4.3879 3.0749 -2.3770 17 1 4.1777 2.0198 -2.5520 18 6 4.0091 3.9127 -3.6242 19 6 5.2771 3.7217 -4.5024 20 6 6.4006 3.6459 -3.4463 21 8 5.7986 3.2794 -2.1994 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9562 0.8900 28 1 1.6767 1.9563 -0.8900 29 1 3.9337 0.9521 -0.9023 30 1 3.9330 0.9055 0.8770 31 1 2.5529 3.4224 1.3745 32 1 3.9177 4.5550 1.2235 33 1 2.8053 4.7525 3.1455 34 1 2.5525 3.4167 -1.3023 35 1 3.8162 4.6346 -1.0054 36 1 3.1244 3.5080 -4.1156 37 1 3.8666 4.9617 -3.3643 38 1 5.4236 4.5754 -5.1641 39 1 5.2190 2.7955 -5.0741 40 1 6.8851 4.6177 -3.3516 41 1 7.1328 2.8934 -3.7388 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207852721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:54 Heat of formation + Delta-G solvation = -84.055367 kcal Electronic energy + Delta-G solvation = -18271.787973 eV Core-core repulsion = 15571.036233 eV Total energy + Delta-G solvation = -2700.751740 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.57380 -38.90867 -35.54733 -34.72534 -33.02828 -31.47501 -29.78303 -28.03216 -25.82144 -25.18314 -22.94695 -22.37705 -22.33373 -20.79215 -18.73292 -17.94638 -16.89378 -16.70625 -16.34706 -16.01351 -15.64799 -15.48438 -14.88972 -14.48400 -14.23195 -13.90241 -13.80367 -13.55389 -13.25910 -12.98518 -12.60896 -12.55496 -12.42368 -12.35085 -12.12150 -12.05452 -11.94210 -11.86440 -11.78344 -11.62909 -11.30723 -10.73967 -10.55651 -10.35722 -8.90335 -8.65508 -6.35427 1.50832 1.60794 1.78292 2.54857 2.90022 3.15648 3.29930 3.60810 3.81163 3.95731 3.98351 4.00364 4.15612 4.25501 4.35735 4.39182 4.44094 4.56760 4.61016 4.69115 4.76496 4.78987 4.84357 4.88894 4.90262 4.98689 5.01105 5.05571 5.07574 5.14516 5.26290 5.30243 5.38524 5.45134 5.82523 6.03306 6.24784 6.45115 6.49565 6.71129 7.43738 8.72025 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.007239 C = 0.005625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.506815 B = 3867.056449 C = 4976.357972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.114 4.114 3 C -0.147 4.147 4 C 0.070 3.930 5 N -0.535 5.535 6 C 0.195 3.805 7 C -0.591 4.591 8 H 0.048 0.952 9 C -0.038 4.038 10 N -0.939 5.939 11 Si 1.123 2.877 12 H -0.273 1.273 13 H -0.276 1.276 14 H -0.279 1.279 15 C 0.050 3.950 16 C 0.090 3.910 17 H 0.070 0.930 18 C -0.147 4.147 19 C -0.142 4.142 20 C 0.034 3.966 21 O -0.398 6.398 22 H 0.070 0.930 23 H 0.038 0.962 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.051 0.949 27 H 0.032 0.968 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.052 0.948 31 H -0.028 1.028 32 H -0.014 1.014 33 H 0.252 0.748 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.104 0.896 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.262 -5.631 -17.169 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.152 4.152 3 C -0.186 4.186 4 C -0.058 4.058 5 N -0.258 5.258 6 C 0.068 3.932 7 C -0.629 4.629 8 H 0.066 0.934 9 C -0.235 4.235 10 N -0.578 5.578 11 Si 0.945 3.055 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.205 1.205 15 C -0.078 4.078 16 C 0.033 3.967 17 H 0.088 0.912 18 C -0.185 4.185 19 C -0.179 4.179 20 C -0.042 4.042 21 O -0.318 6.318 22 H 0.089 0.911 23 H 0.057 0.943 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.070 0.930 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.071 0.929 31 H -0.010 1.010 32 H 0.004 0.996 33 H 0.062 0.938 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.093 0.907 38 H 0.119 0.881 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.482 -5.594 -15.351 16.345 hybrid contribution -1.099 0.541 -1.450 1.898 sum -1.581 -5.052 -16.801 17.615 Atomic orbital electron populations 1.21746 0.95018 1.02272 1.01405 1.21405 0.96549 0.95054 1.02177 1.22124 0.97420 0.98498 1.00553 1.22032 0.92676 0.89939 1.01165 1.62080 1.59613 1.02650 1.01429 1.19530 0.92381 0.92599 0.88647 1.22292 1.28958 1.18643 0.93006 0.93385 1.27351 0.96333 0.95850 1.03954 1.70869 1.29628 1.23296 1.33966 0.82857 0.75444 0.75261 0.71976 1.19813 1.20161 1.20453 1.22355 0.97055 0.97531 0.90845 1.23006 0.81086 0.98918 0.93725 0.91177 1.23322 0.99850 1.00771 0.94530 1.23099 0.92753 1.04451 0.97639 1.23343 0.96672 1.00333 0.83867 1.88602 1.21226 1.90107 1.31854 0.91083 0.94322 0.92092 0.90341 0.92997 0.94908 0.91539 0.90474 0.92921 1.01011 0.99619 0.93834 0.92806 0.93084 0.87765 0.90686 0.88138 0.89142 0.91723 0.90946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.91 71.98 0.71 -2.89 16 2 C -0.11 -3.23 5.93 30.60 0.18 -3.05 16 3 C -0.15 -5.23 4.58 30.59 0.14 -5.09 16 4 C 0.07 2.81 5.01 86.30 0.43 3.24 16 5 N -0.54 -24.77 4.56 -900.82 -4.11 -28.88 16 6 C 0.19 10.84 3.82 85.56 0.33 11.17 16 7 C -0.59 -35.52 8.48 25.60 0.22 -35.31 16 8 H 0.05 2.92 7.11 -2.91 -0.02 2.90 16 9 C -0.04 -2.29 5.46 84.66 0.46 -1.82 16 10 N -0.94 -59.93 13.65 21.45 0.29 -59.63 16 11 Si 1.12 52.86 29.90 68.60 2.05 54.91 16 12 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 13 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 14 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 15 C 0.05 1.89 4.56 86.30 0.39 2.28 16 16 C 0.09 2.75 3.37 31.26 0.11 2.85 16 17 H 0.07 2.03 6.84 -2.39 -0.02 2.01 16 18 C -0.15 -3.10 6.58 32.09 0.21 -2.89 16 19 C -0.14 -2.49 7.02 31.89 0.22 -2.26 16 20 C 0.03 0.84 7.80 72.45 0.56 1.41 16 21 O -0.40 -14.19 10.94 -148.98 -1.63 -15.82 16 22 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.03 1.42 6.25 -2.39 -0.01 1.41 16 28 H 0.07 2.12 6.28 -2.39 -0.02 2.11 16 29 H 0.08 2.70 6.68 -2.39 -0.02 2.68 16 30 H 0.05 2.40 6.80 -2.39 -0.02 2.39 16 31 H -0.03 -1.58 5.91 -2.38 -0.01 -1.60 16 32 H -0.01 -0.86 7.73 -2.39 -0.02 -0.88 16 33 H 0.25 16.35 7.22 -92.70 -0.67 15.68 16 34 H 0.05 1.85 5.86 -2.39 -0.01 1.83 16 35 H 0.05 2.06 7.81 -2.38 -0.02 2.04 16 36 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.07 1.64 8.05 -2.39 -0.02 1.63 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -71.67 316.87 1.65 -70.02 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: 1.07 Total: 11.76 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 3.97 Total: -32.36 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -3.81 Total: -88.52 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -1.63 Total: -15.82 kcal Atomic # 14 Polarization: 52.86 SS G_CDS: 2.05 Total: 54.91 kcal Total: -71.67 1.65 -70.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207852721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.036 kcal (2) G-P(sol) polarization free energy of solvation -71.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds