Wall clock time and date at job start Sun Mar 29 2020 22:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47312 * 2 1 4 4 C 1.53001 * 109.47312 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47371 * 180.02562 * 4 3 2 6 6 C 1.36929 * 120.00466 * 89.99545 * 5 4 3 7 7 H 1.07998 * 120.00344 * 326.16576 * 6 5 4 8 8 C 1.38812 * 120.00068 * 146.15837 * 6 5 4 9 9 N 1.31623 * 120.00079 * 335.30912 * 8 6 5 10 10 Si 1.86801 * 120.00257 * 155.31252 * 8 6 5 11 11 H 1.48497 * 109.47238 * 59.99856 * 10 8 6 12 12 H 1.48502 * 109.47435 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46849 * 299.99891 * 10 8 6 14 14 C 1.46501 * 119.99431 * 269.99816 * 5 4 3 15 15 C 1.53004 * 109.47132 * 94.38390 * 14 5 4 16 16 H 1.08995 * 109.47902 * 305.02192 * 15 14 5 17 17 C 1.53095 * 109.47902 * 184.99480 * 15 14 5 18 18 C 1.53181 * 109.16067 * 182.40687 * 17 15 14 19 19 C 1.53182 * 109.03187 * 56.98414 * 18 17 15 20 20 C 1.53088 * 109.16731 * 303.01681 * 19 18 17 21 21 O 1.42901 * 109.47915 * 65.05761 * 15 14 5 22 22 H 1.09003 * 109.47223 * 299.99920 * 1 2 3 23 23 H 1.09007 * 109.46935 * 59.99738 * 1 2 3 24 24 H 1.08997 * 109.47394 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46929 * 239.99618 * 2 1 3 26 26 H 1.08998 * 109.46733 * 120.00368 * 2 1 3 27 27 H 1.08998 * 109.47522 * 299.99885 * 3 2 1 28 28 H 1.09002 * 109.47435 * 59.99928 * 3 2 1 29 29 H 1.09007 * 109.46935 * 300.00262 * 4 3 2 30 30 H 1.09003 * 109.47223 * 60.00080 * 4 3 2 31 31 H 0.97001 * 120.00514 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.47147 * 214.38370 * 14 5 4 33 33 H 1.08996 * 109.47291 * 334.38421 * 14 5 4 34 34 H 1.09001 * 109.52488 * 302.31746 * 17 15 14 35 35 H 1.09004 * 109.51982 * 62.44207 * 17 15 14 36 36 H 1.09000 * 109.54277 * 176.84721 * 18 17 15 37 37 H 1.09000 * 109.54571 * 297.12175 * 18 17 15 38 38 H 1.08999 * 109.51880 * 62.92859 * 19 18 17 39 39 H 1.09006 * 109.51787 * 183.10742 * 19 18 17 40 40 H 1.08994 * 109.48239 * 177.59388 * 20 19 18 41 41 H 1.09005 * 109.47970 * 297.61835 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0584 2.8236 0.0013 6 6 4.2861 3.4688 1.1873 7 1 3.6605 3.2625 2.0431 8 6 5.3212 4.3880 1.2898 9 7 6.3552 4.3079 0.4794 10 14 5.2468 5.7388 2.5781 11 1 5.1727 5.1296 3.9303 12 1 6.4645 6.5832 2.4810 13 1 4.0436 6.5777 2.3465 14 6 4.3031 3.5144 -1.2672 15 6 3.0641 4.3245 -1.6542 16 1 2.1938 3.6688 -1.6770 17 6 3.2719 4.9457 -3.0379 18 6 2.0532 5.8034 -3.3921 19 6 1.8543 6.8624 -2.3033 20 6 1.7013 6.1673 -0.9480 21 8 2.8543 5.3621 -0.6943 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6768 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.9330 0.9286 0.8909 30 1 3.9338 0.9284 -0.8891 31 1 7.0784 4.9505 0.5507 32 1 5.1557 4.1847 -1.1574 33 1 4.5154 2.7812 -2.0453 34 1 4.1657 5.5696 -3.0266 35 1 3.3893 4.1545 -3.7784 36 1 2.2187 6.2935 -4.3515 37 1 1.1673 5.1712 -3.4520 38 1 2.7193 7.5250 -2.2774 39 1 0.9566 7.4421 -2.5188 40 1 1.6021 6.9176 -0.1637 41 1 0.8128 5.5359 -0.9615 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207958788.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:45:28 Heat of formation + Delta-G solvation = -51.663347 kcal Electronic energy + Delta-G solvation = -18853.878150 eV Core-core repulsion = 16154.531034 eV Total energy + Delta-G solvation = -2699.347117 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -38.65043 -36.11427 -33.98151 -32.92689 -31.41064 -30.70700 -27.88837 -26.15540 -24.02734 -23.45859 -21.87905 -20.56422 -20.00095 -19.57743 -16.57793 -15.57895 -15.30478 -14.83441 -14.42872 -14.16044 -13.92180 -13.51720 -13.45341 -13.37162 -12.60238 -12.29013 -12.04952 -11.80557 -11.72856 -11.17886 -11.02829 -10.80360 -10.72371 -10.70213 -10.59160 -10.45105 -10.18614 -10.13720 -9.98421 -9.80880 -9.59737 -9.33668 -8.52816 -8.24830 -6.43541 -5.58228 -3.10641 3.52435 3.57310 3.64970 4.64656 4.71549 5.18112 5.19800 5.30234 5.32723 5.38743 5.51261 5.56911 5.63051 5.76605 5.83512 5.94339 5.97765 6.03406 6.13627 6.16485 6.24675 6.28718 6.34144 6.38398 6.41334 6.42600 6.49155 6.63241 6.67944 6.78352 6.83547 6.89318 7.04599 7.23434 7.81119 7.99891 8.27676 8.69831 9.36489 10.03209 10.56100 11.41873 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.011413 C = 0.007585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.655460 B = 2452.656337 C = 3690.408461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C -0.137 4.137 4 C 0.146 3.854 5 N -0.579 5.579 6 C -0.238 4.238 7 H 0.055 0.945 8 C 0.020 3.980 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.287 1.287 12 H -0.295 1.295 13 H -0.281 1.281 14 C 0.146 3.854 15 C 0.076 3.924 16 H 0.037 0.963 17 C -0.152 4.152 18 C -0.118 4.118 19 C -0.154 4.154 20 C 0.055 3.945 21 O -0.336 6.336 22 H 0.050 0.950 23 H 0.048 0.952 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.029 0.971 31 H 0.251 0.749 32 H 0.105 0.895 33 H 0.036 0.964 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.321 -1.091 -6.272 11.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.177 4.177 4 C 0.019 3.981 5 N -0.297 5.297 6 C -0.367 4.367 7 H 0.073 0.927 8 C -0.179 4.179 9 N -0.536 5.536 10 Si 0.724 3.276 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.208 1.208 14 C 0.019 3.981 15 C 0.016 3.984 16 H 0.055 0.945 17 C -0.190 4.190 18 C -0.155 4.155 19 C -0.192 4.192 20 C -0.023 4.023 21 O -0.254 6.254 22 H 0.070 0.930 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.054 0.946 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.000 -0.987 -6.095 10.914 hybrid contribution -0.445 0.899 0.266 1.038 sum -9.445 -0.087 -5.828 11.099 Atomic orbital electron populations 1.21765 0.96869 1.00533 1.01451 1.21511 0.94915 0.98482 1.01221 1.22279 0.99837 0.94234 1.01333 1.20902 0.91042 0.87388 0.98728 1.43697 1.75713 1.07989 1.02342 1.18759 1.08736 1.19288 0.89924 0.92743 1.24850 0.94159 1.00953 0.97955 1.69970 1.06803 1.35987 1.40846 0.86517 0.76864 0.83065 0.81146 1.21386 1.22123 1.20772 1.21078 0.96059 0.94756 0.86227 1.23117 1.00593 0.88586 0.86120 0.94491 1.22234 0.98233 0.99611 0.98959 1.21547 0.98561 0.97533 0.97898 1.22191 1.01687 0.98534 0.96813 1.22436 0.90042 0.94249 0.95524 1.88314 1.43547 1.44540 1.49000 0.93037 0.93253 0.93583 0.92757 0.92475 0.93251 0.92456 0.93556 0.95224 0.93895 0.87738 0.94592 0.91317 0.91911 0.92512 0.92566 0.91439 0.92135 0.90172 0.94572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.82 5.93 -26.74 -0.16 -1.98 16 3 C -0.14 -2.50 5.54 -26.74 -0.15 -2.65 16 4 C 0.15 3.10 5.71 -4.04 -0.02 3.08 16 5 N -0.58 -14.51 2.45 -173.23 -0.43 -14.94 16 6 C -0.24 -6.63 8.75 -15.06 -0.13 -6.76 16 7 H 0.05 1.55 7.94 -52.49 -0.42 1.13 16 8 C 0.02 0.57 4.95 -17.43 -0.09 0.48 16 9 N -0.89 -26.25 11.37 55.49 0.63 -25.62 16 10 Si 0.89 22.80 29.62 -169.99 -5.04 17.76 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 13 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 14 C 0.15 3.45 5.11 -4.04 -0.02 3.42 16 15 C 0.08 1.57 2.89 -26.68 -0.08 1.50 16 16 H 0.04 0.76 6.46 -51.93 -0.34 0.42 16 17 C -0.15 -2.60 5.42 -26.59 -0.14 -2.75 16 18 C -0.12 -1.72 6.03 -26.54 -0.16 -1.88 16 19 C -0.15 -2.32 6.14 -26.59 -0.16 -2.48 16 20 C 0.06 0.99 6.84 37.20 0.25 1.24 16 21 O -0.34 -7.62 9.67 -35.23 -0.34 -7.96 16 22 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.91 6.46 -51.93 -0.34 0.58 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 1.01 8.04 -51.92 -0.42 0.60 16 30 H 0.03 0.59 7.86 -51.93 -0.41 0.19 16 31 H 0.25 7.20 8.31 -40.82 -0.34 6.87 16 32 H 0.11 2.85 5.37 -51.93 -0.28 2.57 16 33 H 0.04 0.79 7.84 -51.93 -0.41 0.38 16 34 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 319.92 15.07 4.82 4.82 Total: -1.00 -29.68 319.92 -8.49 -38.17 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -7.65 Total: -1.93 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -0.49 Total: -10.31 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.21 Total: -40.55 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: -0.34 Total: -7.96 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.04 Total: 17.76 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.68 -8.49 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207958788.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.496 kcal (2) G-P(sol) polarization free energy of solvation -29.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds