Wall clock time and date at job start Sun Mar 29 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46629 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47311 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46930 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 H 1.08998 * 109.47384 * 60.00210 * 1 2 3 22 22 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47471 * 299.99311 * 1 2 3 24 24 H 1.08997 * 109.47471 * 240.00689 * 2 1 3 25 25 H 1.08998 * 109.47384 * 119.99790 * 2 1 3 26 26 H 1.09011 * 109.47163 * 60.00224 * 3 2 1 27 27 H 1.08998 * 109.47870 * 300.00437 * 3 2 1 28 28 H 1.08997 * 109.47047 * 60.00025 * 4 3 2 29 29 H 1.08998 * 109.47176 * 299.99963 * 4 3 2 30 30 H 1.09005 * 109.47217 * 59.99592 * 5 4 3 31 31 H 1.08999 * 109.46786 * 300.00486 * 5 4 3 32 32 H 1.08997 * 109.47047 * 59.99714 * 6 5 4 33 33 H 1.08998 * 109.47176 * 299.99653 * 6 5 4 34 34 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 35 35 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 36 36 H 1.08997 * 113.47627 * 334.90698 * 9 8 7 37 37 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 38 38 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 40 40 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 41 41 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8854 0.0026 7 8 6.0860 4.2327 0.0026 8 6 7.5106 4.3457 0.0043 9 6 8.0404 5.6047 0.7047 10 7 9.0421 5.7171 -0.3719 11 6 9.2071 7.1146 -0.7936 12 6 10.3989 7.2256 -1.7092 13 1 10.9764 6.3461 -1.9531 14 6 10.7528 8.4502 -2.2347 15 7 10.0499 9.5213 -1.9374 16 14 12.2305 8.5879 -3.3690 17 1 13.4486 8.8600 -2.5644 18 1 12.4033 7.3148 -4.1137 19 1 12.0144 9.6986 -4.3309 20 6 8.0943 5.0079 -1.2515 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6765 1.9564 0.8901 27 1 1.6766 1.9565 -0.8899 28 1 3.9336 0.9288 -0.8891 29 1 3.9329 0.9290 0.8908 30 1 3.7160 3.3988 0.8913 31 1 3.7168 3.3993 -0.8887 32 1 5.9739 2.3717 -0.8871 33 1 5.9725 2.3715 0.8928 34 1 8.0149 3.4253 0.2989 35 1 8.4759 5.4061 1.6840 36 1 7.3250 6.4269 0.7198 37 1 9.3629 7.7428 0.0835 38 1 8.3116 7.4429 -1.3213 39 1 10.2992 10.3829 -2.3068 40 1 7.3933 5.6709 -1.7585 41 1 8.5755 4.3036 -1.9301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224669176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:19 Heat of formation + Delta-G solvation = -40.926471 kcal Electronic energy + Delta-G solvation = -16734.507659 eV Core-core repulsion = 14035.626128 eV Total energy + Delta-G solvation = -2698.881531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.50724 -37.26465 -36.03202 -33.04391 -32.62527 -29.29569 -28.12085 -25.36492 -25.01523 -23.87418 -21.59067 -21.37173 -21.17139 -19.30767 -16.85485 -16.35655 -16.16075 -15.39561 -15.28799 -14.40350 -14.38266 -14.10523 -13.74284 -13.36548 -13.27822 -12.77254 -12.30503 -12.08412 -11.99403 -11.87864 -11.62110 -11.29788 -11.24365 -11.03146 -10.94970 -10.80220 -10.75640 -10.62373 -10.47518 -10.15993 -9.71498 -9.20316 -9.07226 -8.41343 -7.89636 -6.01480 -4.02739 3.33682 3.38970 3.43510 3.74033 4.44588 4.58259 4.60960 4.75249 4.84764 4.94847 5.03114 5.07689 5.18344 5.22837 5.32368 5.33814 5.42276 5.48465 5.54662 5.54917 5.66278 5.71838 5.82008 5.88202 5.94976 6.01333 6.11672 6.13321 6.15868 6.22893 6.35698 6.44737 6.62820 7.22440 7.51281 7.67292 7.87865 8.12396 8.47286 9.04488 9.60987 11.09675 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.059523 B = 0.002911 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.290929 B = 9616.202558 C = 9700.577984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.117 4.117 5 C -0.119 4.119 6 C 0.061 3.939 7 O -0.377 6.377 8 C 0.052 3.948 9 C -0.003 4.003 10 N -0.465 5.465 11 C 0.161 3.839 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.053 3.947 15 N -0.900 5.900 16 Si 0.901 3.099 17 H -0.280 1.280 18 H -0.274 1.274 19 H -0.287 1.287 20 C -0.005 4.005 21 H 0.054 0.946 22 H 0.052 0.948 23 H 0.053 0.947 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.045 0.955 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.029 0.971 38 H 0.005 0.995 39 H 0.261 0.739 40 H 0.071 0.929 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.436 -17.169 4.476 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.158 4.158 4 C -0.155 4.155 5 C -0.157 4.157 6 C -0.016 4.016 7 O -0.295 6.295 8 C -0.006 4.006 9 C -0.133 4.133 10 N -0.189 5.189 11 C 0.035 3.965 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.148 4.148 15 N -0.539 5.539 16 Si 0.729 3.271 17 H -0.206 1.206 18 H -0.198 1.198 19 H -0.213 1.213 20 C -0.134 4.134 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.072 0.928 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.023 0.977 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.873 -17.021 4.523 23.052 hybrid contribution 0.205 0.501 -0.782 0.951 sum -14.668 -16.520 3.741 22.406 Atomic orbital electron populations 1.21783 0.95984 1.01480 1.01849 1.21544 0.95794 0.97031 1.01969 1.21613 0.95171 0.96668 1.02301 1.21520 0.95537 0.96237 1.02196 1.21536 0.93913 0.96925 1.03331 1.22506 0.94725 0.84501 0.99828 1.87942 1.21309 1.25678 1.94571 1.23992 0.79904 0.98327 0.98399 1.24047 0.94759 0.96321 0.98136 1.68944 1.28651 1.17742 1.03578 1.20263 0.97095 0.82961 0.96179 1.21103 1.11911 0.94034 1.27273 0.91856 1.25024 0.97176 0.95716 0.96920 1.69964 1.39698 0.99153 1.45133 0.86454 0.82672 0.77620 0.80404 1.20610 1.19843 1.21286 1.24239 0.94646 0.98475 0.96072 0.92737 0.92904 0.92771 0.92063 0.92099 0.91913 0.91857 0.91830 0.91905 0.91244 0.91142 0.93525 0.93651 0.88981 0.90417 0.91306 0.95250 0.97694 0.92908 0.91105 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 37.16 0.37 -0.57 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.89 5.21 -26.73 -0.14 -1.03 16 4 C -0.12 -0.94 5.21 -26.73 -0.14 -1.08 16 5 C -0.12 -1.22 5.58 -26.73 -0.15 -1.37 16 6 C 0.06 0.74 5.78 37.16 0.21 0.95 16 7 O -0.38 -6.04 10.40 -35.23 -0.37 -6.40 16 8 C 0.05 0.87 4.65 -26.20 -0.12 0.75 16 9 C 0.00 -0.06 7.52 -7.53 -0.06 -0.12 16 10 N -0.46 -10.63 6.32 -246.08 -1.55 -12.19 16 11 C 0.16 4.38 4.57 -4.98 -0.02 4.36 16 12 C -0.50 -14.80 9.39 -34.44 -0.32 -15.12 16 13 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 14 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -27.38 13.29 55.43 0.74 -26.64 16 16 Si 0.90 22.17 29.54 -169.99 -5.02 17.14 16 17 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C 0.00 -0.10 7.56 -7.54 -0.06 -0.15 16 21 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 22 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.09 1.37 7.88 -51.93 -0.41 0.96 16 35 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.07 1.36 7.91 -51.93 -0.41 0.95 16 37 H 0.03 0.85 8.08 -51.92 -0.42 0.43 16 38 H 0.01 0.15 7.30 -51.93 -0.38 -0.23 16 39 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 40 H 0.07 1.50 7.42 -51.93 -0.39 1.11 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 334.49 15.07 5.04 5.04 Total: -1.00 -30.99 334.49 -9.74 -40.73 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -7.89 Total: -4.75 kcal Atomic # 6 Polarization: -12.24 SS G_CDS: -0.68 Total: -12.92 kcal Atomic # 7 Polarization: -38.01 SS G_CDS: -0.82 Total: -38.83 kcal Atomic # 8 Polarization: -6.04 SS G_CDS: -0.37 Total: -6.40 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.99 -9.74 -40.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224669176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.199 kcal (2) G-P(sol) polarization free energy of solvation -30.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds