Wall clock time and date at job start Sun Mar 29 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46629 * 2 1 4 4 C 1.52999 * 109.47120 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47311 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47311 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46930 * 179.97438 * 6 5 4 8 8 C 1.42904 * 113.99749 * 179.97438 * 7 6 5 9 9 C 1.53514 * 114.17059 * 210.00163 * 8 7 6 10 10 N 1.47483 * 87.92777 * 220.13896 * 9 8 7 11 11 C 1.46903 * 110.99717 * 138.70421 * 10 9 8 12 12 C 1.50694 * 109.47066 * 169.99804 * 11 10 9 13 13 H 1.08000 * 120.00563 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99902 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99913 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47480 * 87.83900 * 27.00973 * 10 9 8 21 21 H 1.08998 * 109.47384 * 60.00210 * 1 2 3 22 22 H 1.09003 * 109.46584 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47471 * 299.99311 * 1 2 3 24 24 H 1.08997 * 109.47471 * 240.00689 * 2 1 3 25 25 H 1.08998 * 109.47384 * 119.99790 * 2 1 3 26 26 H 1.09011 * 109.47163 * 60.00224 * 3 2 1 27 27 H 1.08998 * 109.47870 * 300.00437 * 3 2 1 28 28 H 1.08997 * 109.47047 * 60.00025 * 4 3 2 29 29 H 1.08998 * 109.47176 * 299.99963 * 4 3 2 30 30 H 1.09005 * 109.47217 * 59.99592 * 5 4 3 31 31 H 1.08999 * 109.46786 * 300.00486 * 5 4 3 32 32 H 1.08997 * 109.47047 * 59.99714 * 6 5 4 33 33 H 1.08998 * 109.47176 * 299.99653 * 6 5 4 34 34 H 1.09002 * 113.25611 * 342.95779 * 8 7 6 35 35 H 1.09000 * 113.47331 * 105.37574 * 9 8 7 36 36 H 1.08997 * 113.47627 * 334.90698 * 9 8 7 37 37 H 1.09007 * 109.47052 * 49.99488 * 11 10 9 38 38 H 1.09003 * 109.46808 * 290.00181 * 11 10 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 40 40 H 1.09004 * 113.47132 * 87.75237 * 20 10 9 41 41 H 1.09000 * 113.47538 * 218.21976 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4427 0.0006 5 6 4.0798 2.8852 0.0013 6 6 5.6098 2.8854 0.0026 7 8 6.0860 4.2327 0.0026 8 6 7.5106 4.3457 0.0043 9 6 8.0404 5.6047 0.7047 10 7 9.0421 5.7171 -0.3719 11 6 9.2071 7.1146 -0.7936 12 6 10.3989 7.2256 -1.7092 13 1 10.9764 6.3461 -1.9531 14 6 10.7528 8.4502 -2.2347 15 7 10.0499 9.5213 -1.9374 16 14 12.2305 8.5879 -3.3690 17 1 13.4486 8.8600 -2.5644 18 1 12.4033 7.3148 -4.1137 19 1 12.0144 9.6986 -4.3309 20 6 8.0943 5.0079 -1.2515 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 -0.3634 0.5137 0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.6765 1.9564 0.8901 27 1 1.6766 1.9565 -0.8899 28 1 3.9336 0.9288 -0.8891 29 1 3.9329 0.9290 0.8908 30 1 3.7160 3.3988 0.8913 31 1 3.7168 3.3993 -0.8887 32 1 5.9739 2.3717 -0.8871 33 1 5.9725 2.3715 0.8928 34 1 8.0149 3.4253 0.2989 35 1 8.4759 5.4061 1.6840 36 1 7.3250 6.4269 0.7198 37 1 9.3629 7.7428 0.0835 38 1 8.3116 7.4429 -1.3213 39 1 10.2992 10.3829 -2.3068 40 1 7.3933 5.6709 -1.7585 41 1 8.5755 4.3036 -1.9301 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224669176.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:19 Heat of formation + Delta-G solvation = -61.125479 kcal Electronic energy + Delta-G solvation = -16735.383554 eV Core-core repulsion = 14035.626128 eV Total energy + Delta-G solvation = -2699.757425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.06463 -38.35672 -36.88491 -35.03876 -33.58144 -31.10980 -29.03210 -27.10864 -26.74674 -24.71943 -23.41958 -22.15719 -21.83612 -20.83693 -18.66701 -17.92724 -17.15749 -16.93082 -16.32346 -16.23784 -15.53557 -15.36528 -14.74405 -14.45082 -14.24879 -14.12829 -13.82793 -13.69195 -13.20352 -13.10736 -12.82890 -12.69347 -12.44457 -12.29152 -12.13271 -12.04035 -11.75900 -11.71559 -11.58445 -11.40701 -11.33753 -11.19806 -10.64420 -10.37879 -9.77220 -8.25277 -6.36567 1.38952 1.41455 1.52931 2.37261 2.59018 3.06573 3.38263 3.46506 3.85718 3.98759 3.99981 4.13489 4.21642 4.32542 4.40471 4.49249 4.50070 4.54999 4.64107 4.67649 4.69720 4.80891 4.85756 4.90498 4.91706 4.95290 5.03489 5.09752 5.12437 5.23014 5.26543 5.38791 5.48683 5.53067 5.53783 5.71987 6.02898 6.32036 6.37806 6.77381 7.33006 8.86315 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.059523 B = 0.002911 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.290929 B = 9616.202558 C = 9700.577984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.119 4.119 4 C -0.111 4.111 5 C -0.116 4.116 6 C 0.053 3.947 7 O -0.395 6.395 8 C 0.083 3.917 9 C -0.009 4.009 10 N -0.479 5.479 11 C 0.176 3.824 12 C -0.528 4.528 13 H 0.061 0.939 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.264 1.264 19 H -0.279 1.279 20 C -0.012 4.012 21 H 0.052 0.948 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.062 0.938 25 H 0.064 0.936 26 H 0.061 0.939 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.054 0.946 37 H 0.002 0.998 38 H -0.023 1.023 39 H 0.266 0.734 40 H 0.050 0.950 41 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.105 -19.065 4.390 24.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.162 4.162 3 C -0.157 4.157 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.023 4.023 7 O -0.313 6.313 8 C 0.025 3.975 9 C -0.138 4.138 10 N -0.203 5.203 11 C 0.049 3.951 12 C -0.567 4.567 13 H 0.080 0.920 14 C -0.200 4.200 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.196 1.196 18 H -0.188 1.188 19 H -0.205 1.205 20 C -0.142 4.142 21 H 0.071 0.929 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.141 0.859 35 H 0.117 0.883 36 H 0.072 0.928 37 H 0.020 0.980 38 H -0.005 1.005 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.559 -18.941 4.447 24.300 hybrid contribution 0.008 1.063 -0.719 1.284 sum -14.551 -17.878 3.729 23.350 Atomic orbital electron populations 1.21793 0.95712 1.01903 1.01796 1.21535 0.96061 0.96387 1.02250 1.21601 0.94779 0.97262 1.02054 1.21475 0.95825 0.94665 1.02848 1.21529 0.92827 0.98347 1.02665 1.22808 0.95675 0.82656 1.01149 1.87930 1.20470 1.28505 1.94410 1.23683 0.80808 0.98153 0.94859 1.24119 0.93927 0.97404 0.98342 1.68840 1.30968 1.14774 1.05740 1.19919 0.95413 0.85316 0.94414 1.21420 1.12712 0.94363 1.28162 0.92040 1.26024 1.00402 0.95138 0.98444 1.70092 1.41470 0.99808 1.46147 0.85279 0.78513 0.78034 0.78158 1.19570 1.18837 1.20468 1.24290 0.94125 0.98327 0.97437 0.92901 0.92263 0.92753 0.91898 0.91684 0.92026 0.92317 0.91383 0.90993 0.91623 0.92184 0.92632 0.91772 0.85898 0.88281 0.92764 0.97981 1.00547 0.92509 0.93167 0.89564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.96 16 2 C -0.12 -1.44 5.93 30.60 0.18 -1.26 16 3 C -0.12 -1.59 5.21 30.59 0.16 -1.43 16 4 C -0.11 -1.55 5.21 30.60 0.16 -1.39 16 5 C -0.12 -2.19 5.58 30.60 0.17 -2.02 16 6 C 0.05 1.15 5.78 71.98 0.42 1.57 16 7 O -0.39 -12.07 10.40 -148.98 -1.55 -13.62 16 8 C 0.08 2.66 4.65 30.94 0.14 2.81 16 9 C -0.01 -0.33 7.52 83.58 0.63 0.30 16 10 N -0.48 -22.13 6.32 -932.85 -5.89 -28.02 16 11 C 0.18 9.97 4.57 85.55 0.39 10.36 16 12 C -0.53 -31.53 9.39 25.60 0.24 -31.29 16 13 H 0.06 3.61 7.81 -2.91 -0.02 3.58 16 14 C 0.00 -0.12 5.46 84.66 0.46 0.34 16 15 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 16 Si 0.98 45.42 29.54 68.60 2.03 47.45 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 20 C -0.01 -0.49 7.56 83.58 0.63 0.14 16 21 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 22 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.28 8.14 -2.38 -0.02 1.27 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.12 3.22 7.88 -2.39 -0.02 3.20 16 35 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 36 H 0.05 2.21 7.91 -2.39 -0.02 2.19 16 37 H 0.00 0.13 8.08 -2.38 -0.02 0.11 16 38 H -0.02 -1.41 7.30 -2.39 -0.02 -1.43 16 39 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 40 H 0.05 2.20 7.42 -2.39 -0.02 2.18 16 41 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -67.08 334.49 0.11 -66.97 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.94 Total: 7.72 kcal Atomic # 6 Polarization: -27.15 SS G_CDS: 4.30 Total: -22.85 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -5.61 Total: -85.67 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.55 Total: -13.62 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -67.08 0.11 -66.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224669176.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.842 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds